Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003584

Physical Location & Seq

Genomic Coordinates Reverse (-)

4476585 .. 4499655

Gene Structure 23071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3492 bp

ATGGGCGTACCTCAAGATTCCTTGCCCAATTCTCCTAACAACAGAAAGAAGCAGCAGCAAGGGTTTCGTAAACCCAAGCAAGTTCATCACATGGACATTGATAAGGAACTCCTCGCCGCCCCAATCAAATCCGCCAAGGACAAATTTGCCCTCATCCCTGAGTTTCTCAAGGTGAGAGGGTTGGTAAAGCAGCATTTGGACTCGTTTAATTACTTTGTCAATACTGGAATCAAGAAAATTGTGCGTGCCAATGACCGGATAGTGTCTGGTGTCGATCCAAGCATTTGGCTCAGGTTTAATAATGTCTATATTGATAGACCCTCATTGACGACTGATGGTGTCACTACTGAAATTGCTCCCCATACATGTCGTTTATCTGATATGACGTATTCTGCTCCAATAAGAGTTGATGTAGAGTACGTTGAAGGAAGTCATGATCAAAAGATGATAGCGACCAGGAAAGGTATTGAAATTGGAAGACTGCCTATTATGTTACGGAGTTGCTGCTGCACTTTATATGGAAAAACTGAATCCGAACTTGCAACACTTGGTGAGTGCCCACTTGATCCTGGAGGGTATTTTATCATCAAGGGAAATGAGAAGGTACTTTTGATACAAGAACAACTTTCCAAAAACAGGATTATCATTGACATGGATAAGAAGGGAAACGTAAATGCTTCCGTTACAAGCAGCTCAGAGACAATAAAAAGCAAGACCATAATTCAGATGGAAAAACAGAAGATCTATCTGGAGCTTAATCAATTTTCCAAAAAGATTCCTATTATGGTGGTCATGAAGGCTATGGGAATGACTAGTGATCAAGAAGTTGTACAGATGGTTGGAAGAGATCCTCGATATGGTGCCCTGCTCATGCCATCTATTGAGGAATGTGCAAAGGAAGGTATATATACAAAAGAGCAAGCATTGCTGTATCTTGAACCAAAGGTGAAGAGGTCCATGTTTGATAGTGCGTCATCTGATAAGGACAGTAAAGTCATGGCAGTTCTTCGAGATATATTTATTGCTAATGTTCCAGTACGCCGGTCCAATTTCCGTCCAAAATGCATATATGTGGCTGTCATGTTGAGGCGGATAATGGATGCAATTTTAAACAAGGATACAATGGATGACAAGGATTACGTTGGGAACAAGCGGCTTGAGCTATCTGGGCAGTCTATTTCTCTTCTGTTTGAGGATCTGTTCAAGACAATGATCTCTGAAGTTAGGAAGACTGTAGACAATATATTAACAAAGCCTAGCAGGTCTAGTCGTTTTGACTTGGCTCAGTACATCCGCAAAGATCAAATTTCACTAGGCCTTGAAAGAACCCTTTCTACTGGAAACTTTGATCTCAAACGGTTCAAAATGCACAGGACAGGGATGACACAGGTGCTAGCTAGGTTATCTTTCATTGGTTCTCTAGGCCAAATGACCAGAACAAAACCACAGTTTGAGAAGTCACGGAAAGTGAGTGGACCTCGAGCCTTGCAACCTAGCCAGTGGGGCATGCTTTGCCCTTGTGACACTCCAGAAGGTGAAGCATGTGGACTGGTAAAAAACTTAGCCCTGATGGCCCATGTGACAACTGATGAAGAAGAGGGCCCTTTAATATCTCTGTGCAAATGCTTGGGTGTTGAAGATCTGGAAACACTATCAGCAGAGGAGCTTCACTCACCAAATTCTTTTCTTGTTTTATTCAATGGAGACATCCTTGGAAAACACAGGAAGCCACAGCGTTTGGCCACTGCAATGAGAAAGTTGCGTAGAGCTGGGAAGATTGGAGAGTTTGTTAGTGTGTTTGTCAATGAGAAGCAGCATTGTGTTTATATTGCTTCTGATGGTGGTCGAGTTTGTCGGCCACTGGTTATTGCTGACAAGGGCATTTCAAGAGTCAAAGAATATCATATGCAGGAGCTGAATGCGGGGGTGCGTACTTTTGATGACTTTTTAAGTGATGGGTTGATCGAGTATCTTGATGTTAACGAGCAGAATAATGCTTTGATTGCTCTATATGAAGATGAGGCAACAACAGAAACAACTCATATAGAAATAGAGCCTTTCACCATCTTAGGTGTTATCGCTGGGCTAATTCCGTATCCTCACCACAATCAGTCGCCTAGAAATACTTACCAGTGCGCAATGGGGAAGCAAGCAATGGGGAATATTGCATATAATCAGCTACGTCGGATTGACTTGCTCTACCTACTGGTGTATCCTCAACGACCATTATTGACAACAAAGACCATTGAGCTGGTGGGCTTTGATAAACTCGGAGCTGGGCAGAATGCAACTGTTGCTGTGATGAGTTATAGTGGCTATGACATAGAGGATGCAATAGTCATGAACAAGTCATCTCTTGATCGTGGTTTTGGCCGGTGTATTCTAATGAAAAAGTTTGTTGTCGCCAATCAAAATTATAGCAATAACACTCAGGACAGAATAATCAAGCCAAATAAAGATGAAGTTGATTCTGGAAAGATGCGGGTCCTCGATGATGATGGTATTGCTGCTCCTGGGGAAATTATTACAGCAAATGACATTTACGTAAAGAAGCAGGTCCCTATAGTCACAAGGGGGGCTATTAGATCGGGATTAAAGGATAGTGACTATAGATCTACCTTTCAAAGATATAAAGGACCTGATGGGGAGTCTTGTGTGGTGGATAAAGTAGCTCTGTTTTCTGACAAACATAATAATTTGTGTGTTAAATTATTGATTCGCCATACTCGTAGACCGGAGGTTGGTGACAAGTTCAGTAGTAGGCATGGGCAGAAAGGTGTTTGTGGTACAATTGTCCAGCAGGAAGATTTCCCATTTTCTGAACGTGGCATTTGCCCTGATTTAATCATGAACCCTCATGGATTTCCAAGCCGAATGACTGTTGGCAAGATGATTGAGCTTCTTGGGGGTAAAGCAGGAGTTTCATGTGGTAGGTTCCATTATGGTAGTGCCTTTGGTGAACCAAGTGGTCATGCGGACAAGGTTGAGGCTATAAGTGAAACCCTTGTGAGGATGGGATTTAGCTACGACGGCAAAGACTACATTTGCTCAGGAATCACTGGTTGCCCATTGCAAGCATATATTTTCATGGGACCAATTTACTACCAGAAATTAAAACACATGGTCCTAGATAAAATGCATGCACGTGGTAGTGGTCCCAGAGTCAGTCTAACTAGACAACCTACTGAGGGAAAAGCTCGTAACGGAGGACTACGAGTAGGAGAAATGGAGCGTGATTGCCTGATTGCTTATGGTGCTAGTATGTTGCTATATGAGCGCCTAATGATCTCTAGTGATCCTTTCGAAGTTCAGGTCTGCAGAGTGTGTGGTTTGTTAGGTTATTACAACCACAAGATGAAAGCTGGAATTTGTTCTTCATGCAAAAATGGGGATAATATTTCTACCATGAAGCTTCCCTATGCTTGCAAGCTCTTGATCCAGGAACTCCAGTCGATGAACATTGTCCCCCGCTTAAAACTAGCTGAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006383 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032501 GO:0032502 GO:0032648 GO:0032728 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0046483 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080134 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1164

Amino Acids

130.21

Weight (kDa)

8.98

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	60 - 437	4.1e-54	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	211 - 387	1.9e-21	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	463 - 527	6e-19	RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4	PF04566	564 - 624	2.5e-23	RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_6	PF00562	693 - 1067	6.8e-134	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	1069 - 1159	7.4e-31	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45140 AT5G45140 AT5G45140
fragaria_vesca	FvH4_5g31720 FvH4_7g03930
malus_domestica	MD14G1029000.v1.1
prunus_persica	Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1
pyrus_communis	pycom14g02710
rosa_chinensis	RchiOBHm_Chr1g0327591 RchiOBHm_Chr7g0227611
rosa_laevigata	RLG00000001632 RLG00000029981
rosa_multiflora	Rmu_co8491793.1_g000001 Rmu_sc0001772.1_g000005 Rmu_ssc0000042.1_g000027
rosa_roxburghii	Rroxscaffold_3G00232000 Rroxscaffold_4G00322550
rosa_rugosa	Rorug01G0068500 Rorug07G0242400
rosa_samantha	Rh1AG085800 Rh1BG068400 Rh1CG083300 Rh1DG090000 Rh7AG395800 Rh7BG377500 Rh7CG414500 Rh7DG391600
rosa_wichuraiana	Rw1G006690 Rw7G032920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	992
Acc16I	TGCGCA	1 cut(s)	2137
Acc36I	ACCTGC	2 cut(s)	1251, 2545
AccB1I	GGYRCC	1 cut(s)	860
AccI	GTMKAC	2 cut(s)	1236, 2731
AciI	CCGC	9 cut(s)	117, 132, 1090, 1153, 1294, 1922, 2482, 2975, 3469
AclWI	GGATC	6 cut(s)	269, 560, 842, 1203, 3290, 3430
AcoI	YGGCCR	3 cut(s)	1740, 1856, 2371
AcsI	RAATTY	4 cut(s)	143, 1305, 1678, 3366
AcuI	CTGAAG	1 cut(s)	1239
AcvI	CACGTG	1 cut(s)	3146
AdeI	CACNNNGTG	1 cut(s)	551
AfaI	GTAC	8 cut(s)	9, 419, 606, 831, 1038, 1289, 1933, 2788
AfiI	CCNNNNNNNGG	6 cut(s)	255, 636, 857, 2741, 3009, 3188
AflIII	ACRYGT	1 cut(s)	365
AhlI	ACTAGT	1 cut(s)	812
AjnI	CCWGG	4 cut(s)	455, 568, 2512, 3438
Alw26I	GTCTC	2 cut(s)	692, 1698
AlwI	GGATC	6 cut(s)	269, 560, 842, 1203, 3290, 3430
AlwNI	CAGNNNCTG	1 cut(s)	1915
Ama87I	CYCGRG	1 cut(s)	1479
AoxI	GGCC	7 cut(s)	1315, 1423, 1572, 1600, 1740, 1856, 2371
ApaI	GGGCCC	1 cut(s)	1604
ApeKI	GCWGC	8 cut(s)	52, 55, 190, 504, 507, 690, 1813, 2507
ApoI	RAATTY	4 cut(s)	143, 1305, 1678, 3366
ArsI	GACNNNNNNTTYG	2 cut(s)	3297, 3329
Asp700I	GAANNNNTTC	2 cut(s)	1330, 3370
AspLEI	GCGC	2 cut(s)	2138, 3279
AsuHPI	GGTGA	9 cut(s)	184, 563, 958, 1547, 1665, 2053, 2093, 2756, 2969
AsuII	TTCGAA	1 cut(s)	3303
AsuNHI	GCTAGC	1 cut(s)	1393
AvaI	CYCGRG	1 cut(s)	1479
AvaII	GGWCC	9 cut(s)	954, 1044, 1475, 2485, 2557, 2636, 3092, 3124, 3155
BaeGI	GKGCMC	3 cut(s)	560, 865, 1604
BaeI	ACNNNNGTAYC	4 cut(s)	2195, 2228, 2778, 2811
BalI	TGGCCA	1 cut(s)	1742
BanI	GGYRCC	1 cut(s)	860
BanII	GRGCYC	1 cut(s)	1604
BbrPI	CACGTG	1 cut(s)	3146
BbsI	GAAGAC	2 cut(s)	484, 1235
BbvCI	CCTCAGC	1 cut(s)	3483
BbvI	GCAGC	8 cut(s)	64, 67, 202, 491, 494, 702, 1825, 2494
BceAI	ACGGC	1 cut(s)	3046
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	4 cut(s)	457, 570, 2514, 3440
BciVI	GTATCC	3 cut(s)	1111, 2106, 2223
BclI	TGATCA	2 cut(s)	436, 817
BcoDI	GTCTC	2 cut(s)	692, 1698
BcuI	ACTAGT	1 cut(s)	812
BfmI	CTRYAG	4 cut(s)	1233, 2562, 2608, 3316
BfoI	RGCGCY	1 cut(s)	3280
BfuAI	ACCTGC	2 cut(s)	1251, 2545
BfuI	GTATCC	3 cut(s)	1111, 2106, 2223
BglI	GCCNNNNNGGC	2 cut(s)	1503, 1571
BglII	AGATCT	3 cut(s)	741, 1639, 2612
Bme1390I	CCNGG	4 cut(s)	457, 570, 2514, 3440
Bme18I	GGWCC	9 cut(s)	954, 1044, 1475, 2485, 2557, 2636, 3092, 3124, 3155
BmeT110I	CYCGRG	1 cut(s)	1479
BmiI	GGNNCC	7 cut(s)	862, 1602, 2486, 2559, 2936, 3093, 3157
BmrFI	CCNGG	4 cut(s)	457, 570, 2514, 3440
BmsI	GCATC	3 cut(s)	1090, 2320, 2469
BmtI	GCTAGC	1 cut(s)	1397
BpiI	GAAGAC	2 cut(s)	484, 1235
BplI	GAGNNNNNCTC	4 cut(s)	1462, 1494, 1655, 1687
BpmI	CTGGAG	4 cut(s)	591, 770, 1512, 3431
Bpu10I	CCTNAGC	3 cut(s)	290, 3049, 3483
Bpu14I	TTCGAA	1 cut(s)	3303
BpuEI	CTTGAG	2 cut(s)	152, 1178
BsaAI	YACGTR	2 cut(s)	2545, 3146
BsaJI	CCNNGG	3 cut(s)	135, 1711, 2513
BsaWI	WCCGGW	2 cut(s)	255, 2734
BsaXI	ACNNNNNCTCC	2 cut(s)	1773, 1803
Bsc4I	CCNNNNNNNGG	6 cut(s)	255, 636, 857, 2741, 3009, 3188
Bse118I	RCCGGY	2 cut(s)	1041, 2373
Bse3DI	GCAATG	5 cut(s)	923, 1755, 2145, 2160, 3068
BseBI	CCWGG	4 cut(s)	457, 570, 2514, 3440
BseDI	CCNNGG	3 cut(s)	135, 1711, 2513
BseGI	GGATG	8 cut(s)	153, 1105, 1132, 1290, 1386, 1707, 2335, 3018
BseLI	CCNNNNNNNGG	6 cut(s)	255, 636, 857, 2741, 3009, 3188
BseMI	GCAATG	5 cut(s)	923, 1755, 2145, 2160, 3068
BseMII	CTCAG	8 cut(s)	150, 304, 708, 1298, 2444, 3063, 3177, 3474
BseRI	GAGGAG	2 cut(s)	101, 1676
BseSI	GKGCMC	3 cut(s)	560, 865, 1604
BseXI	GCAGC	8 cut(s)	64, 67, 202, 491, 494, 702, 1825, 2494
BseYI	CCCAGC	3 cut(s)	1769, 2081, 2276
BsgI	GTGCAG	1 cut(s)	493
BshFI	GGCC	7 cut(s)	1317, 1425, 1574, 1602, 1742, 1858, 2373
BshNI	GGYRCC	1 cut(s)	860
BsiHKCI	CYCGRG	1 cut(s)	1479
BsiSI	CCGG	4 cut(s)	256, 1042, 2374, 2735
BslFI	GGGAC	4 cut(s)	2543, 3105, 3141, 3449
BslI	CCNNNNNNNGG	6 cut(s)	255, 636, 857, 2741, 3009, 3188
BsmAI	GTCTC	2 cut(s)	692, 1698
BsmFI	GGGAC	4 cut(s)	2543, 3105, 3141, 3449
BsmI	GAATGC	2 cut(s)	1924, 2290
BsnI	GGCC	7 cut(s)	1317, 1425, 1574, 1602, 1742, 1858, 2373
BsoBI	CYCGRG	1 cut(s)	1479
Bsp119I	TTCGAA	1 cut(s)	3303
Bsp120I	GGGCCC	1 cut(s)	1600
Bsp1286I	GDGCHC	3 cut(s)	560, 865, 1604
Bsp1407I	TGTACA	1 cut(s)	829
BspACI	CCGC	9 cut(s)	117, 132, 1090, 1153, 1294, 1922, 2482, 2975, 3469
BspANI	GGCC	7 cut(s)	1317, 1425, 1574, 1602, 1742, 1858, 2373
BspCNI	CTCAG	8 cut(s)	151, 303, 707, 1297, 2443, 3062, 3178, 3475
BspHI	TCATGA	4 cut(s)	433, 792, 2340, 2847
BspLI	GGNNCC	7 cut(s)	862, 1602, 2486, 2559, 2936, 3093, 3157
BspMAI	CTGCAG	1 cut(s)	3320
BspMI	ACCTGC	2 cut(s)	1251, 2545
BspOI	GCTAGC	1 cut(s)	1397
BspPI	GGATC	6 cut(s)	269, 560, 842, 1203, 3290, 3430
BspT104I	TTCGAA	1 cut(s)	3303
BspT107I	GGYRCC	1 cut(s)	860
BsrDI	GCAATG	5 cut(s)	923, 1755, 2145, 2160, 3068
BsrFI	RCCGGY	2 cut(s)	1041, 2373
BsrGI	TGTACA	1 cut(s)	829
BssAI	RCCGGY	2 cut(s)	1041, 2373
BssECI	CCNNGG	3 cut(s)	135, 1711, 2513
BssT1I	CCWWGG	2 cut(s)	135, 1711
Bst2UI	CCWGG	4 cut(s)	457, 570, 2514, 3440
Bst4CI	ACNGT	6 cut(s)	989, 1234, 1359, 1449, 2293, 2881
Bst6I	CTCTTC	4 cut(s)	838, 944, 1188, 1590
BstAPI	GCANNNNNTGC	3 cut(s)	925, 1512, 2294
BstAUI	TGTACA	1 cut(s)	829
BstBAI	YACGTR	2 cut(s)	2545, 3146
BstBI	TTCGAA	1 cut(s)	3303
BstC8I	GCNNGC	9 cut(s)	246, 921, 1395, 1508, 2151, 3075, 3141, 3424, 3428
BstF5I	GGATG	8 cut(s)	153, 1105, 1132, 1290, 1386, 1707, 2335, 3018
BstH2I	RGCGCY	1 cut(s)	3280
BstHHI	GCGC	2 cut(s)	2138, 3279
BstMAI	GTCTC	2 cut(s)	692, 1698
BstNI	CCWGG	4 cut(s)	457, 570, 2514, 3440
BstNSI	RCATGY	4 cut(s)	369, 1510, 1545, 3143
BstSCI	CCNGG	4 cut(s)	455, 568, 2512, 3438
BstSFI	CTRYAG	4 cut(s)	1233, 2562, 2608, 3316
BstSLI	GKGCMC	3 cut(s)	560, 865, 1604
BstSNI	TACGTA	1 cut(s)	2545
BstV1I	GCAGC	8 cut(s)	64, 67, 202, 491, 494, 702, 1825, 2494
BstV2I	GAAGAC	2 cut(s)	484, 1235
BstX2I	RGATCY	5 cut(s)	741, 847, 1195, 1639, 2612
BstXI	CCANNNNNNTGG	2 cut(s)	285, 2251
BstYI	RGATCY	5 cut(s)	741, 847, 1195, 1639, 2612
BsuI	GTATCC	3 cut(s)	1111, 2106, 2223
BsuRI	GGCC	7 cut(s)	1317, 1425, 1574, 1602, 1742, 1858, 2373
BtsCI	GGATG	8 cut(s)	153, 1105, 1132, 1290, 1386, 1707, 2335, 3018
BtsI	GCAGTG	1 cut(s)	1743
BtsIMutI	CAGTG	5 cut(s)	1505, 1743, 1859, 2138, 3057
BveI	ACCTGC	2 cut(s)	1251, 2545
Cac8I	GCNNGC	9 cut(s)	246, 921, 1395, 1508, 2151, 3075, 3141, 3424, 3428
CaiI	CAGNNNCTG	1 cut(s)	1915
CciI	TCATGA	4 cut(s)	433, 792, 2340, 2847
CfoI	GCGC	2 cut(s)	2138, 3279
Cfr10I	RCCGGY	2 cut(s)	1041, 2373
CseI	GACGC	1 cut(s)	960
Csp6I	GTAC	8 cut(s)	8, 418, 605, 830, 1037, 1288, 1932, 2787
CspCI	CAANNNNNGTGG	2 cut(s)	1719, 1754
CviQI	GTAC	8 cut(s)	8, 418, 605, 830, 1037, 1288, 1932, 2787
DraI	TTTAAA	1 cut(s)	1110
DraIII	CACNNNGTG	1 cut(s)	551
DrdI	GACNNNNNNGTC	1 cut(s)	992
DseDI	GACNNNNNNGTC	1 cut(s)	992
EaeI	YGGCCR	3 cut(s)	1740, 1856, 2371
Eam1104I	CTCTTC	4 cut(s)	838, 944, 1188, 1590
EarI	CTCTTC	4 cut(s)	838, 944, 1188, 1590
EciI	GGCGGA	2 cut(s)	121, 1105
Eco105I	TACGTA	1 cut(s)	2545
Eco130I	CCWWGG	2 cut(s)	135, 1711
Eco147I	AGGCCT	1 cut(s)	1317
Eco24I	GRGCYC	1 cut(s)	1604
Eco47I	GGWCC	9 cut(s)	954, 1044, 1475, 2485, 2557, 2636, 3092, 3124, 3155
Eco57I	CTGAAG	1 cut(s)	1239
Eco72I	CACGTG	1 cut(s)	3146
Eco88I	CYCGRG	1 cut(s)	1479
EcoO109I	RGGNCCY	5 cut(s)	1600, 1601, 2485, 2557, 2636
EcoRII	CCWGG	4 cut(s)	455, 568, 2512, 3438
EcoT14I	CCWWGG	2 cut(s)	135, 1711
EcoT22I	ATGCAT	2 cut(s)	1067, 3141
EcoT38I	GRGCYC	1 cut(s)	1604
ErhI	CCWWGG	2 cut(s)	135, 1711
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FaqI	GGGAC	4 cut(s)	2543, 3105, 3141, 3449
FauI	CCCGC	3 cut(s)	1915, 2475, 3476
FauNDI	CATATG	1 cut(s)	1905
FbaI	TGATCA	2 cut(s)	436, 817
FblI	GTMKAC	2 cut(s)	1236, 2731
FokI	GGATG	8 cut(s)	140, 1112, 1139, 1277, 1393, 1694, 2342, 3025
FriOI	GRGCYC	1 cut(s)	1604
FspI	TGCGCA	1 cut(s)	2137
GlaI	GCGC	2 cut(s)	2137, 3278
GsaI	CCCAGC	3 cut(s)	1773, 2085, 2280
GsuI	CTGGAG	4 cut(s)	591, 770, 1512, 3431
HaeII	RGCGCY	1 cut(s)	3280
HaeIII	GGCC	7 cut(s)	1317, 1425, 1574, 1602, 1742, 1858, 2373
HapII	CCGG	4 cut(s)	256, 1042, 2374, 2735
HgaI	GACGC	1 cut(s)	960
HhaI	GCGC	2 cut(s)	2138, 3279
Hin6I	GCGC	2 cut(s)	2136, 3277
HinP1I	GCGC	2 cut(s)	2136, 3277
HincII	GTYRAC	1 cut(s)	1981
HindII	GTYRAC	1 cut(s)	1981
HindIII	AAGCTT	1 cut(s)	3410
HpaI	GTTAAC	1 cut(s)	1981
HpaII	CCGG	4 cut(s)	256, 1042, 2374, 2735
HphI	GGTGA	9 cut(s)	184, 563, 958, 1547, 1665, 2053, 2093, 2756, 2969
Hpy166II	GTNNAC	7 cut(s)	71, 1237, 1475, 1547, 1981, 2732, 2960
Hpy8I	GTNNAC	7 cut(s)	71, 1237, 1475, 1547, 1981, 2732, 2960
Hpy99I	CGWCG	2 cut(s)	2187, 3032
HpyAV	CCTTC	6 cut(s)	419, 595, 655, 790, 893, 1526
HpyCH4III	ACNGT	6 cut(s)	989, 1234, 1359, 1449, 2293, 2881
HpyCH4IV	ACGT	8 cut(s)	386, 420, 669, 1140, 2182, 2544, 2824, 3145
HpySE526I	ACGT	8 cut(s)	386, 420, 669, 1140, 2182, 2544, 2824, 3145
HspAI	GCGC	2 cut(s)	2136, 3277
Ksp22I	TGATCA	2 cut(s)	436, 817
KspAI	GTTAAC	1 cut(s)	1981
LmnI	GCTCC	8 cut(s)	361, 400, 751, 1663, 1912, 2273, 2515, 3229
Lsp1109I	GCAGC	8 cut(s)	64, 67, 202, 491, 494, 702, 1825, 2494
LweI	GCATC	3 cut(s)	1090, 2320, 2469
MaeII	ACGT	8 cut(s)	386, 420, 669, 1140, 2182, 2544, 2824, 3145
MfeI	CAATTG	1 cut(s)	2790
MflI	RGATCY	5 cut(s)	741, 847, 1195, 1639, 2612
MhlI	GDGCHC	3 cut(s)	560, 865, 1604
MlsI	TGGCCA	1 cut(s)	1742
MluNI	TGGCCA	1 cut(s)	1742
MlyI	GAGTC	4 cut(s)	194, 1899, 2657, 3171
MmeI	TCCRAC	2 cut(s)	820, 2165
Mox20I	TGGCCA	1 cut(s)	1742
Mph1103I	ATGCAT	2 cut(s)	1067, 3141
MroXI	GAANNNNTTC	2 cut(s)	1330, 3370
MscI	TGGCCA	1 cut(s)	1742
MslI	CAYNNNNRTG	4 cut(s)	650, 1070, 1748, 3144
Msp20I	TGGCCA	1 cut(s)	1742
MspI	CCGG	4 cut(s)	256, 1042, 2374, 2735
MspR9I	CCNGG	4 cut(s)	457, 570, 2514, 3440
MunI	CAATTG	1 cut(s)	2790
Mva1269I	GAATGC	2 cut(s)	1924, 2290
MvaI	CCWGG	4 cut(s)	457, 570, 2514, 3440
NdeI	CATATG	1 cut(s)	1905
NheI	GCTAGC	1 cut(s)	1393
NlaIV	GGNNCC	7 cut(s)	862, 1602, 2486, 2559, 2936, 3093, 3157
NmuCI	GTSAC	7 cut(s)	340, 1458, 1520, 1579, 2566, 2603, 2744
NsbI	TGCGCA	1 cut(s)	2137
NsiI	ATGCAT	2 cut(s)	1067, 3141
NspI	RCATGY	4 cut(s)	369, 1510, 1545, 3143
NspV	TTCGAA	1 cut(s)	3303
PaeI	GCATGC	2 cut(s)	1510, 3143
PaeR7I	CTCGAG	1 cut(s)	1479
PagI	TCATGA	4 cut(s)	433, 792, 2340, 2847
PceI	AGGCCT	1 cut(s)	1317
PciI	ACATGT	1 cut(s)	365
PcsI	WCGNNNNNNNCGW	1 cut(s)	2725
PctI	GAATGC	2 cut(s)	1924, 2290
PdmI	GAANNNNTTC	2 cut(s)	1330, 3370
PfeI	GAWTC	7 cut(s)	17, 228, 530, 775, 2468, 2716, 3054
PfoI	TCCNGGA	2 cut(s)	568, 3438
PleI	GAGTC	4 cut(s)	194, 1898, 2656, 3170
PmaCI	CACGTG	1 cut(s)	3146
PmlI	CACGTG	1 cut(s)	3146
PpsI	GAGTC	4 cut(s)	194, 1898, 2656, 3170
Ppu21I	YACGTR	2 cut(s)	2545, 3146
PpuMI	RGGWCCY	3 cut(s)	2485, 2557, 2636
PscI	ACATGT	1 cut(s)	365
Psp5II	RGGWCCY	3 cut(s)	2485, 2557, 2636
Psp6I	CCWGG	4 cut(s)	455, 568, 2512, 3438
PspCI	CACGTG	1 cut(s)	3146
PspFI	CCCAGC	3 cut(s)	1769, 2081, 2276
PspGI	CCWGG	4 cut(s)	455, 568, 2512, 3438
PspN4I	GGNNCC	7 cut(s)	862, 1602, 2486, 2559, 2936, 3093, 3157
PspOMI	GGGCCC	1 cut(s)	1600
PspPPI	RGGWCCY	3 cut(s)	2485, 2557, 2636
PspXI	VCTCGAGB	1 cut(s)	1479
PsrI	GAACNNNNNNTAC	2 cut(s)	1318, 1350
PstI	CTGCAG	1 cut(s)	3320
PstNI	CAGNNNCTG	1 cut(s)	1915
PsuI	RGATCY	5 cut(s)	741, 847, 1195, 1639, 2612
RsaI	GTAC	8 cut(s)	9, 419, 606, 831, 1038, 1289, 1933, 2788
RsaNI	GTAC	8 cut(s)	8, 418, 605, 830, 1037, 1288, 1932, 2787
RseI	CAYNNNNRTG	4 cut(s)	650, 1070, 1748, 3144
SchI	GAGTC	4 cut(s)	194, 1899, 2657, 3171
ScrFI	CCNGG	4 cut(s)	457, 570, 2514, 3440
SduI	GDGCHC	3 cut(s)	560, 865, 1604
SfaNI	GCATC	3 cut(s)	1090, 2320, 2469
SfcI	CTRYAG	4 cut(s)	1233, 2562, 2608, 3316
Sfr274I	CTCGAG	1 cut(s)	1479
SfuI	TTCGAA	1 cut(s)	3303
SinI	GGWCC	9 cut(s)	954, 1044, 1475, 2485, 2557, 2636, 3092, 3124, 3155
SlaI	CTCGAG	1 cut(s)	1479
SmiMI	CAYNNNNRTG	4 cut(s)	650, 1070, 1748, 3144
SmlI	CTYRAG	4 cut(s)	12, 167, 1157, 1479
SmoI	CTYRAG	4 cut(s)	12, 167, 1157, 1479
SnaBI	TACGTA	1 cut(s)	2545
SpeI	ACTAGT	1 cut(s)	812
SphI	GCATGC	2 cut(s)	1510, 3143
SseBI	AGGCCT	1 cut(s)	1317
SsiI	CCGC	9 cut(s)	117, 132, 1090, 1153, 1294, 1922, 2482, 2975, 3469
SspI	AATATT	2 cut(s)	2164, 3397
StuI	AGGCCT	1 cut(s)	1317
StyD4I	CCNGG	4 cut(s)	455, 568, 2512, 3438
StyI	CCWWGG	2 cut(s)	135, 1711
TaaI	ACNGT	6 cut(s)	989, 1234, 1359, 1449, 2293, 2881
TaiI	ACGT	8 cut(s)	389, 423, 672, 1143, 2185, 2547, 2827, 3148
TaqI	TCGA	9 cut(s)	273, 853, 1009, 1480, 1846, 1965, 2490, 3303, 3452
TatI	WGTACW	2 cut(s)	829, 1287
TauI	GCSGC	2 cut(s)	119, 1156
TfiI	GAWTC	7 cut(s)	17, 228, 530, 775, 2468, 2716, 3054
TscAI	CASTG	5 cut(s)	1505, 1750, 1866, 2138, 3064
TseFI	GTSAC	7 cut(s)	340, 1458, 1520, 1579, 2566, 2603, 2744
TseI	GCWGC	8 cut(s)	52, 55, 190, 504, 507, 690, 1813, 2507
Tsp45I	GTSAC	7 cut(s)	340, 1458, 1520, 1579, 2566, 2603, 2744
TspGWI	ACGGA	6 cut(s)	511, 670, 1043, 1477, 2082, 3219
TspRI	CASTG	5 cut(s)	1505, 1750, 1866, 2138, 3064
VpaK11BI	GGWCC	9 cut(s)	954, 1044, 1475, 2485, 2557, 2636, 3092, 3124, 3155
XapI	RAATTY	4 cut(s)	143, 1305, 1678, 3366
XceI	RCATGY	4 cut(s)	369, 1510, 1545, 3143
XcmI	CCANNNNNNNNNTGG	2 cut(s)	724, 2251
XhoI	CTCGAG	1 cut(s)	1479
XmiI	GTMKAC	2 cut(s)	1236, 2731
XmnI	GAANNNNTTC	2 cut(s)	1330, 3370
Zsp2I	ATGCAT	2 cut(s)	1067, 3141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.