Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003584

Physical Location & Seq

Genomic Coordinates Reverse (-)

13751374 .. 13774746

Gene Structure 23373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G006690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3378 bp

ATGGGCGTACCGCAAGACTCCTTGGCGGACCCTCCTAAGAGCAGCAAGAACCAACGGTTTCGTAATGGCAAGCAAGTTCATCACATGGACATTGATAAGGAACTCCTCGCCGCCCCAATCAAATCCGCCAAGGACAAATTCGCACTCATTCCCGAGTTTCTAAAGGTGAGAGGGTTGGTAAAGCAGCATTTGGACTCGTTTAATTACTTTGTCAACACTGGAATCAAGAAAATTGTGCGCGCCAATGATCGCATAGTGTCCGGCGTCGATCCAAGCATTTGGCTCAGGTTTAATAATATCTATATTGATAAGCCCTCACTGACAACTGATGGTGTCACTACCGAAATCGCTCCCCATACATGTCGTTTATCTGATATGACGTATTCTGCTCCAATAAGAGTCGATGTAGAGTACGTTGAAGGAAGTCACGATCAAAAGAGGATAGTGACCAGGAAAGCTGTCGAAATTGCAAGAATGCCTATCATGTTACGGAGTTGCTGCTGTACCTTATATGGAAAAACGGAATCCGAACTTGCAATTCTTGGTGAGTGCCCACTTGATCCTGGAGGGTATTTTATCATCAAAGGGAATGAGAAGGTGCTTTTGATACAAGAACAGCTTTCAAAAAACAGGATTATCATTGACATGGATAAGAAGGGAAACGTAAATGCTTCTGTTACAAGCAGTTCAGAGACAATTAAAAGCAAGACTGTAATTCAGATGGAAAAACAGAAGATCTATTTGGATCTTAATCAATTTTCCAAAAAGATTCCTATTATGGTGGTCATGAAGGCTATGGGAATGACTAGTGATCAAGAAGTTGTACAGATGGTTGGAAGAGATCCTCGATATGGTGCCCTGCTCATGCCATCTATTGAGGAATGCGCAAAGGAAGGTATATATACAAAAGAGCAAGCACTGCTGTATCTCGAATCAAAGGACTGTAAAGTAATGGCAGTTCTTCGAGATATATTTATTGCTAATGTTCCGGTATGCCGGTCCAATTTTCGTCCAAAATGCATATATGTTGCTGTCATGTTGAGGCGCATAATGGATGCAATTTTAAACAAGGATGCGATGGATGACAAGGATTATGTTGGGAACAAGCGGCTTGAGCTATCTGGGCAATCTATTTCTCTTCTGTTTGAGGATCTGTTCAAGACAATGATCTCTGAAGTTAGGAAGACTGTAGACAATATATTAACAAAGCCTAGCAGGTCTAGTCGTTTTGACTTGGCTCAGTACATACGCAAAGATAGTATTTCACATGGCCTTGAAAGAACCCTTTCTACTGGAAACTTTGATCTCAAACGGTTCAGGATGCACAGGACAGGCATGACACAGGTGCTAGCTAGGTTATCTTTCATTGGGTCTCTAGGCCAAATGACCAGAACAAAACCGCAGTTTGAGAAGTCACGAAAAGTGAGTGGACCTAGAGCCTTGCAACCTAGCCAGTGGGGCATGCTTTGCCCTTGTGACACTCCAGAAGGTGAAGCATGTGGACTGGTAAAAAATTTAGCCCTGATGGCCCATGTAACAACTGATGAAGAGGAGGGCCCTCTAATATCTCTGTGCAAATGCTTGGGTGTGGAAGATTTGGAAACACTATCGGCAGAGGAGCTTCACTCACCCAATTCTTTTCTGGTTTTATTCAATGGAGACATCCTCGGAAAGCACAGGAAGCCACAGCGTTTTGCCACTGCAATGAGAAAGTTGCGTAGAGCTGGGAAGATTGGAGAATTTGTTAGCGTCTTTGTCAATGAGAAGCAGCATTGTGTTTACATTGCTTCTGATGGCGGTCGAGTTTGTCGGCCACTAGTTATCGCTGACAAGGGCATTTCAAGAGTCAAAGAATATCACATGCAGGAGCTGAATGCTGGGGTCCGTACTTTTAATGACTTTTTAAGTGACGGGTTGATCGAGTATCTTGATGTTAACGAGCAGAATAATGCTTTGATTGCTCTATACGAAGATGAGGCAACAACAGAAACTACTCATATAGAAATAGAGCCTTTCACCATCTTAGGTGTTATTGCTGGGCTAATTCCGTATCCTCACCACAATCAGTCGCCTAGAAATACTTACCAGTGTGCAATGGGGAAGCAAGCAATGGGGAATATCGCATATAACCAGCTTCGTCGGATAGACTTGCTTTACCTTCTGGTGTATCCCCAACGACCATTATTGACAACAAAGACCATTGAGCTGGTGGGCTTTGATAAACTTGGAGCTGGGCAGAATGCAACTGTTGCTGTGATGAGTTATAGTGGCTATGACATAGAGGATGCAATCGTCATGAACAAGGCATCTCTGGTTTTGTGTAAAGCACATGCTATTGTTGGATGGAATAATAGTGATACCCATATTGGAGTTCTCGATGATGATGGTATTGCTGCACCTGGGGAAATTATTAGATCAAATGACATCTATGTAAAGAAGCAGGTCCCTATTGTCACAAGGGGGGCTATTAGATCGGGATTAAAGGATAGTGAGTATCGGTCTGCCTTTCAAAAATATAAAGGACCTGATGGGGAGTCTTGTGTGGTGGATAAAGTAGCTCTCTTTTCTGATACACATAATAATTTATGTGTTAAAGTATTGATTCGCCATACTCGTAGACCAGAGGTTGGTGACAAGTTTAGTAGCAGACATGGGCAGAAAGGTGTTTGTGGTACAATTGTCCAGCAGGAAGATTTCCCATTTTCTGAACGTGGCATTTGCCCTGATTTAATCATGAACCCTCATGGATTTCCAAGCCGAATGACTGTTGGCAAGATGATTGAGCTTCTTGGGGGTAAAGCAGGAGTTTCATGTGGTAGGTTTCATTATGGTAGTGCCTTTGGTGAACCAAGTGGTCATGCAGACAAGGTTGAGGCTATAAGTGAAACACTTGTGAGGATGGGATTTAGCTATGATGGCAAAGACTTCTTATGCTCAGGAATCACTGGTTGCCCATTGCAAGCATATATTTTCATGGGACCAATTTACTACCAGAAGTTAAAACACATGGTCCTTGATAAAATGCATGCACGTGGTAGTGGTCCCAGAGTCAGTCTAACTAGACAGCCTACTGAGGGAAAAGCTCGTAATGGAGGACTACGAGTAGGAGAAATGGAGCGTGATTGTCTGATTGCTTATGGTGCCAGTATGTTGCTGTATGAGCGCCTAATGATCTCTAGTGATCCTTTCGAAGTTCAGGTTTGCAGAGTGTGTGGTTTATTGGGTTATTACAACCACAAGATGAAAGCGGGAATTTGTTCCTCATGCAAAAATGGGGATAATATTTCTACCATGAAGCTTCCCTATGCTTGCAAGCTCTTGATCCAGGAACTCCAGTCGATGAACATTGTTCCCCGCTTAAAACTAGCTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006383 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032501 GO:0032502 GO:0032648 GO:0032728 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0046483 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080134 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1125

Amino Acids

125.57

Weight (kDa)

8.8

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	58 - 422	1.6e-53	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	209 - 372	9.5e-18	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	448 - 512	5.8e-19	RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4	PF04566	549 - 609	2.4e-23	RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_6	PF00562	678 - 771	1.3e-32	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_6	PF00562	784 - 1029	1.4e-87	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	1031 - 1121	7.1e-31	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45140 AT5G45140 AT5G45140
fragaria_vesca	FvH4_5g31720 FvH4_7g03930
malus_domestica	MD14G1029000.v1.1
prunus_persica	Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1
pyrus_communis	pycom14g02710
rosa_chinensis	RchiOBHm_Chr1g0327591 RchiOBHm_Chr7g0227611
rosa_laevigata	RLG00000001632 RLG00000029981
rosa_multiflora	Rmu_co8491793.1_g000001 Rmu_sc0001772.1_g000005 Rmu_ssc0000042.1_g000027
rosa_roxburghii	Rroxscaffold_3G00232000 Rroxscaffold_4G00322550
rosa_rugosa	Rorug01G0068500 Rorug07G0242400
rosa_samantha	Rh1AG085800 Rh1BG068400 Rh1CG083300 Rh1DG090000 Rh7AG395800 Rh7BG377500 Rh7CG414500 Rh7DG391600
rosa_wichuraiana	Rw1G006690 Rw7G032920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	886
Acc36I	ACCTGC	2 cut(s)	1206, 2431
AccB1I	GGYRCC	2 cut(s)	854, 3140
AccB7I	CCANNNNNTGG	1 cut(s)	2627
AccI	GTMKAC	2 cut(s)	1191, 2617
AccII	CGCG	1 cut(s)	240
AciI	CCGC	9 cut(s)	11, 26, 111, 126, 1108, 1400, 1797, 3248, 3355
AclWI	GGATC	7 cut(s)	263, 554, 753, 836, 1158, 3176, 3316
AcoI	YGGCCR	1 cut(s)	1811
AcsI	RAATTY	4 cut(s)	137, 1513, 1739, 3252
AcuI	CTGAAG	1 cut(s)	1194
AcvI	CACGTG	1 cut(s)	3032
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	7 cut(s)	9, 413, 505, 825, 1244, 1888, 2674
AfiI	CCNNNNNNNGG	3 cut(s)	851, 2627, 3074
AflIII	ACRYGT	1 cut(s)	359
AgsI	TTSAA	7 cut(s)	419, 624, 1159, 1277, 1654, 1842, 2510
AhlI	ACTAGT	2 cut(s)	806, 1816
AjnI	CCWGG	4 cut(s)	449, 562, 2398, 3324
AjuI	GAANNNNNNNTTGG	4 cut(s)	122, 154, 725, 757
Alw26I	GTCTC	3 cut(s)	686, 1377, 1653
AlwI	GGATC	7 cut(s)	263, 554, 753, 836, 1158, 3176, 3316
AlwNI	CAGNNNCTG	1 cut(s)	1870
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	5 cut(s)	1270, 1378, 1527, 1555, 1811
ApaI	GGGCCC	1 cut(s)	1559
ApeKI	GCWGC	5 cut(s)	42, 184, 498, 1768, 2393
ApoI	RAATTY	4 cut(s)	137, 1513, 1739, 3252
Asp700I	GAANNNNTTC	2 cut(s)	1285, 3256
AspLEI	GCGC	5 cut(s)	240, 242, 887, 1047, 3165
AsuHPI	GGTGA	8 cut(s)	178, 557, 1502, 1620, 2008, 2048, 2642, 2855
AsuII	TTCGAA	1 cut(s)	3189
AsuNHI	GCTAGC	1 cut(s)	1348
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	9 cut(s)	28, 999, 1430, 1882, 2443, 2522, 2978, 3010, 3041
BaeGI	GKGCMC	3 cut(s)	554, 859, 1559
BaeI	ACNNNNGTAYC	4 cut(s)	908, 941, 2664, 2697
BanI	GGYRCC	2 cut(s)	854, 3140
BanII	GRGCYC	1 cut(s)	1559
BbrPI	CACGTG	1 cut(s)	3032
BbsI	GAAGAC	1 cut(s)	1190
BbvI	GCAGC	5 cut(s)	54, 196, 485, 1780, 2380
BciT130I	CCWGG	4 cut(s)	451, 564, 2400, 3326
BciVI	GTATCC	2 cut(s)	2061, 2178
BclI	TGATCA	1 cut(s)	811
BcoDI	GTCTC	3 cut(s)	686, 1377, 1653
BcuI	ACTAGT	2 cut(s)	806, 1816
BfmI	CTRYAG	1 cut(s)	1188
BfoI	RGCGCY	1 cut(s)	3166
BfuAI	ACCTGC	2 cut(s)	1206, 2431
BfuI	GTATCC	2 cut(s)	2061, 2178
BglI	GCCNNNNNGGC	2 cut(s)	1458, 1526
BglII	AGATCT	1 cut(s)	735
BisI	GCNGC	7 cut(s)	43, 111, 185, 499, 1109, 1769, 2394
BlsI	GCNGC	7 cut(s)	44, 112, 186, 500, 1110, 1770, 2395
Bme1390I	CCNGG	4 cut(s)	451, 564, 2400, 3326
Bme18I	GGWCC	9 cut(s)	28, 999, 1430, 1882, 2443, 2522, 2978, 3010, 3041
BmeT110I	CYCGRG	1 cut(s)	152
BmiI	GGNNCC	8 cut(s)	30, 856, 1557, 1883, 2445, 2979, 3043, 3142
BmrFI	CCNGG	4 cut(s)	451, 564, 2400, 3326
BmsI	GCATC	5 cut(s)	1045, 1063, 1311, 2275, 2315
BmtI	GCTAGC	1 cut(s)	1352
BpiI	GAAGAC	1 cut(s)	1190
BplI	GAGNNNNNCTC	4 cut(s)	1610, 1642, 1650, 1682
BpmI	CTGGAG	3 cut(s)	585, 1467, 3317
Bpu10I	CCTNAGC	2 cut(s)	284, 2935
Bpu14I	TTCGAA	1 cut(s)	3189
BpuEI	CTTGAG	1 cut(s)	1133
BsaAI	YACGTR	1 cut(s)	3032
BsaBI	GATNNNNATC	1 cut(s)	750
BsaHI	GRCGYC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	1377
BsaJI	CCNNGG	4 cut(s)	21, 129, 1666, 2399
BsaWI	WCCGGW	1 cut(s)	988
BsaXI	ACNNNNNCTCC	2 cut(s)	1728, 1758
Bsc4I	CCNNNNNNNGG	3 cut(s)	851, 2627, 3074
Bse118I	RCCGGY	1 cut(s)	996
Bse1I	ACTGG	8 cut(s)	223, 1297, 1453, 1509, 2086, 2950, 3144, 3334
Bse3DI	GCAATG	5 cut(s)	1710, 1782, 2100, 2115, 2954
Bse8I	GATNNNNATC	1 cut(s)	750
BseBI	CCWGG	4 cut(s)	451, 564, 2400, 3326
BseDI	CCNNGG	4 cut(s)	21, 129, 1666, 2399
BseGI	GGATG	8 cut(s)	1060, 1078, 1087, 1326, 1662, 2290, 2348, 2904
BseJI	GATNNNNATC	1 cut(s)	750
BseLI	CCNNNNNNNGG	3 cut(s)	851, 2627, 3074
BseMI	GCAATG	5 cut(s)	1710, 1782, 2100, 2115, 2954
BseMII	CTCAG	4 cut(s)	298, 1253, 2949, 3063
BseNI	ACTGG	8 cut(s)	223, 1297, 1453, 1509, 2086, 2950, 3144, 3334
BsePI	GCGCGC	1 cut(s)	238
BseRI	GAGGAG	3 cut(s)	95, 1565, 1631
BseSI	GKGCMC	3 cut(s)	554, 859, 1559
BseXI	GCAGC	5 cut(s)	54, 196, 485, 1780, 2380
BseYI	CCCAGC	4 cut(s)	1724, 1877, 2036, 2231
BsgI	GTGCAG	1 cut(s)	2379
Bsh1236I	CGCG	1 cut(s)	240
Bsh1285I	CGRYCG	1 cut(s)	1801
BshFI	GGCC	5 cut(s)	1272, 1380, 1529, 1557, 1813
BshNI	GGYRCC	2 cut(s)	854, 3140
BsiEI	CGRYCG	1 cut(s)	1801
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	3 cut(s)	261, 989, 997
BslFI	GGGAC	3 cut(s)	2429, 2991, 3027
BslI	CCNNNNNNNGG	3 cut(s)	851, 2627, 3074
BsmAI	GTCTC	3 cut(s)	686, 1377, 1653
BsmFI	GGGAC	3 cut(s)	2429, 2991, 3027
BsmI	GAATGC	4 cut(s)	480, 887, 1879, 2245
BsnI	GGCC	5 cut(s)	1272, 1380, 1529, 1557, 1813
Bso31I	GGTCTC	1 cut(s)	1377
BsoBI	CYCGRG	1 cut(s)	152
Bsp119I	TTCGAA	1 cut(s)	3189
Bsp120I	GGGCCC	1 cut(s)	1555
Bsp1286I	GDGCHC	3 cut(s)	554, 859, 1559
Bsp1407I	TGTACA	1 cut(s)	823
BspACI	CCGC	9 cut(s)	11, 26, 111, 126, 1108, 1400, 1797, 3248, 3355
BspANI	GGCC	5 cut(s)	1272, 1380, 1529, 1557, 1813
BspCNI	CTCAG	4 cut(s)	297, 1252, 2948, 3064
BspFNI	CGCG	1 cut(s)	240
BspHI	TCATGA	3 cut(s)	786, 2295, 2733
BspLI	GGNNCC	8 cut(s)	30, 856, 1557, 1883, 2445, 2979, 3043, 3142
BspMI	ACCTGC	2 cut(s)	1206, 2431
BspOI	GCTAGC	1 cut(s)	1352
BspPI	GGATC	7 cut(s)	263, 554, 753, 836, 1158, 3176, 3316
BspT104I	TTCGAA	1 cut(s)	3189
BspT107I	GGYRCC	2 cut(s)	854, 3140
BspTNI	GGTCTC	1 cut(s)	1377
BsrDI	GCAATG	5 cut(s)	1710, 1782, 2100, 2115, 2954
BsrFI	RCCGGY	1 cut(s)	996
BsrGI	TGTACA	1 cut(s)	823
BsrI	ACTGG	8 cut(s)	223, 1297, 1453, 1509, 2086, 2950, 3144, 3334
BssAI	RCCGGY	1 cut(s)	996
BssECI	CCNNGG	4 cut(s)	21, 129, 1666, 2399
BssHII	GCGCGC	1 cut(s)	238
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	2 cut(s)	21, 129
Bst2UI	CCWGG	4 cut(s)	451, 564, 2400, 3326
Bst4CI	ACNGT	7 cut(s)	57, 712, 944, 1189, 1314, 2248, 2767
Bst6I	CTCTTC	3 cut(s)	832, 1143, 1542
BstACI	GRCGYC	1 cut(s)	264
BstAPI	GCANNNNNTGC	3 cut(s)	919, 1467, 2249
BstAUI	TGTACA	1 cut(s)	823
BstBAI	YACGTR	1 cut(s)	3032
BstBI	TTCGAA	1 cut(s)	3189
BstDEI	CTNAG	6 cut(s)	36, 284, 1239, 2023, 2935, 3072
BstF5I	GGATG	8 cut(s)	1060, 1078, 1087, 1326, 1662, 2290, 2348, 2904
BstFNI	CGCG	1 cut(s)	240
BstH2I	RGCGCY	1 cut(s)	3166
BstHHI	GCGC	5 cut(s)	240, 242, 887, 1047, 3165
BstMAI	GTCTC	3 cut(s)	686, 1377, 1653
BstMCI	CGRYCG	1 cut(s)	1801
BstNI	CCWGG	4 cut(s)	451, 564, 2400, 3326
BstNSI	RCATGY	6 cut(s)	363, 1465, 1500, 1864, 2333, 3029
BstSCI	CCNGG	4 cut(s)	449, 562, 2398, 3324
BstSFI	CTRYAG	1 cut(s)	1188
BstSLI	GKGCMC	3 cut(s)	554, 859, 1559
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	5 cut(s)	54, 196, 485, 1780, 2380
BstV2I	GAAGAC	1 cut(s)	1190
BstX2I	RGATCY	4 cut(s)	735, 745, 841, 1150
BstXI	CCANNNNNNTGG	2 cut(s)	279, 2206
BstYI	RGATCY	4 cut(s)	735, 745, 841, 1150
BsuI	GTATCC	2 cut(s)	2061, 2178
BsuRI	GGCC	5 cut(s)	1272, 1380, 1529, 1557, 1813
BtgZI	GCGATG	1 cut(s)	1091
BtsCI	GGATG	8 cut(s)	1060, 1078, 1087, 1326, 1662, 2290, 2348, 2904
BtsI	GCAGTG	2 cut(s)	917, 1698
BtsIMutI	CAGTG	7 cut(s)	216, 317, 917, 1460, 1698, 2093, 2943
BveI	ACCTGC	2 cut(s)	1206, 2431
CaiI	CAGNNNCTG	1 cut(s)	1870
CciI	TCATGA	3 cut(s)	786, 2295, 2733
CfoI	GCGC	5 cut(s)	240, 242, 887, 1047, 3165
Cfr10I	RCCGGY	1 cut(s)	996
CseI	GACGC	2 cut(s)	253, 1738
Csp6I	GTAC	7 cut(s)	8, 412, 504, 824, 1243, 1887, 2673
CviQI	GTAC	7 cut(s)	8, 412, 504, 824, 1243, 1887, 2673
DdeI	CTNAG	6 cut(s)	36, 284, 1239, 2023, 2935, 3072
DraI	TTTAAA	1 cut(s)	1065
EaeI	YGGCCR	1 cut(s)	1811
Eam1104I	CTCTTC	3 cut(s)	832, 1143, 1542
EarI	CTCTTC	3 cut(s)	832, 1143, 1542
EciI	GGCGGA	2 cut(s)	41, 115
Eco130I	CCWWGG	2 cut(s)	21, 129
Eco24I	GRGCYC	1 cut(s)	1559
Eco31I	GGTCTC	1 cut(s)	1377
Eco47I	GGWCC	9 cut(s)	28, 999, 1430, 1882, 2443, 2522, 2978, 3010, 3041
Eco57I	CTGAAG	1 cut(s)	1194
Eco72I	CACGTG	1 cut(s)	3032
Eco88I	CYCGRG	1 cut(s)	152
EcoO109I	RGGNCCY	4 cut(s)	1555, 1556, 2443, 2522
EcoRII	CCWGG	4 cut(s)	449, 562, 2398, 3324
EcoT14I	CCWWGG	2 cut(s)	21, 129
EcoT22I	ATGCAT	2 cut(s)	1022, 3027
EcoT38I	GRGCYC	1 cut(s)	1559
ErhI	CCWWGG	2 cut(s)	21, 129
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FaqI	GGGAC	3 cut(s)	2429, 2991, 3027
FauI	CCCGC	2 cut(s)	3241, 3362
FbaI	TGATCA	1 cut(s)	811
FblI	GTMKAC	2 cut(s)	1191, 2617
Fnu4HI	GCNGC	7 cut(s)	43, 111, 185, 499, 1109, 1769, 2394
FokI	GGATG	8 cut(s)	1067, 1085, 1094, 1333, 1649, 2297, 2355, 2911
FriOI	GRGCYC	1 cut(s)	1559
Fsp4HI	GCNGC	7 cut(s)	43, 111, 185, 499, 1109, 1769, 2394
FspI	TGCGCA	1 cut(s)	886
GlaI	GCGC	5 cut(s)	239, 241, 886, 1046, 3164
GluI	GCNGC	7 cut(s)	43, 111, 185, 499, 1109, 1769, 2394
GsaI	CCCAGC	4 cut(s)	1728, 1881, 2040, 2235
GsuI	CTGGAG	3 cut(s)	585, 1467, 3317
HaeII	RGCGCY	1 cut(s)	3166
HaeIII	GGCC	5 cut(s)	1272, 1380, 1529, 1557, 1813
HapII	CCGG	3 cut(s)	261, 989, 997
HgaI	GACGC	2 cut(s)	253, 1738
HhaI	GCGC	5 cut(s)	240, 242, 887, 1047, 3165
Hin1I	GRCGYC	1 cut(s)	264
Hin6I	GCGC	5 cut(s)	238, 240, 885, 1045, 3163
HinP1I	GCGC	5 cut(s)	238, 240, 885, 1045, 3163
HincII	GTYRAC	2 cut(s)	214, 1936
HindII	GTYRAC	2 cut(s)	214, 1936
HindIII	AAGCTT	2 cut(s)	3296, 3372
HpaI	GTTAAC	1 cut(s)	1936
HpaII	CCGG	3 cut(s)	261, 989, 997
HphI	GGTGA	8 cut(s)	178, 557, 1502, 1620, 2008, 2048, 2642, 2855
Hpy166II	GTNNAC	8 cut(s)	214, 1192, 1430, 1502, 1780, 1936, 2618, 2846
Hpy8I	GTNNAC	8 cut(s)	214, 1192, 1430, 1502, 1780, 1936, 2618, 2846
Hpy99I	CGWCG	2 cut(s)	269, 2142
HpyAV	CCTTC	7 cut(s)	413, 589, 649, 784, 887, 1481, 2168
HpyCH4III	ACNGT	7 cut(s)	57, 712, 944, 1189, 1314, 2248, 2767
HpyCH4IV	ACGT	5 cut(s)	380, 414, 663, 2710, 3031
HpyF3I	CTNAG	6 cut(s)	36, 284, 1239, 2023, 2935, 3072
HpySE526I	ACGT	5 cut(s)	380, 414, 663, 2710, 3031
Hsp92I	GRCGYC	1 cut(s)	264
HspAI	GCGC	5 cut(s)	238, 240, 885, 1045, 3163
Ksp22I	TGATCA	1 cut(s)	811
KspAI	GTTAAC	1 cut(s)	1936
LmnI	GCTCC	6 cut(s)	355, 394, 1618, 1867, 2228, 3115
Lsp1109I	GCAGC	5 cut(s)	54, 196, 485, 1780, 2380
LweI	GCATC	5 cut(s)	1045, 1063, 1311, 2275, 2315
MaeII	ACGT	5 cut(s)	380, 414, 663, 2710, 3031
MfeI	CAATTG	1 cut(s)	2676
MflI	RGATCY	4 cut(s)	735, 745, 841, 1150
MhlI	GDGCHC	3 cut(s)	554, 859, 1559
MlyI	GAGTC	6 cut(s)	11, 188, 408, 1854, 2543, 3057
MmeI	TCCRAC	3 cut(s)	814, 2120, 2320
Mph1103I	ATGCAT	2 cut(s)	1022, 3027
MroXI	GAANNNNTTC	2 cut(s)	1285, 3256
MslI	CAYNNNNRTG	3 cut(s)	644, 1703, 3030
MspI	CCGG	3 cut(s)	261, 989, 997
MspR9I	CCNGG	4 cut(s)	451, 564, 2400, 3326
MunI	CAATTG	1 cut(s)	2676
Mva1269I	GAATGC	4 cut(s)	480, 887, 1879, 2245
MvaI	CCWGG	4 cut(s)	451, 564, 2400, 3326
MvnI	CGCG	1 cut(s)	240
NheI	GCTAGC	1 cut(s)	1348
NlaIV	GGNNCC	8 cut(s)	30, 856, 1557, 1883, 2445, 2979, 3043, 3142
NmuCI	GTSAC	8 cut(s)	334, 425, 445, 1413, 1475, 1907, 2452, 2630
NsbI	TGCGCA	1 cut(s)	886
NsiI	ATGCAT	2 cut(s)	1022, 3027
NspI	RCATGY	6 cut(s)	363, 1465, 1500, 1864, 2333, 3029
NspV	TTCGAA	1 cut(s)	3189
PaeI	GCATGC	2 cut(s)	1465, 3029
PagI	TCATGA	3 cut(s)	786, 2295, 2733
PauI	GCGCGC	1 cut(s)	238
PciI	ACATGT	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	2 cut(s)	1917, 2611
PctI	GAATGC	4 cut(s)	480, 887, 1879, 2245
PdmI	GAANNNNTTC	2 cut(s)	1285, 3256
PfeI	GAWTC	6 cut(s)	222, 524, 769, 932, 2602, 2940
PflMI	CCANNNNNTGG	1 cut(s)	2627
PfoI	TCCNGGA	2 cut(s)	562, 3324
PkrI	GCNGC	7 cut(s)	44, 112, 186, 500, 1110, 1770, 2395
PleI	GAGTC	6 cut(s)	11, 188, 407, 1853, 2542, 3056
PmaCI	CACGTG	1 cut(s)	3032
PmlI	CACGTG	1 cut(s)	3032
PpsI	GAGTC	6 cut(s)	11, 188, 407, 1853, 2542, 3056
Ppu21I	YACGTR	1 cut(s)	3032
PpuMI	RGGWCCY	2 cut(s)	2443, 2522
PscI	ACATGT	1 cut(s)	359
Psp5II	RGGWCCY	2 cut(s)	2443, 2522
Psp6I	CCWGG	4 cut(s)	449, 562, 2398, 3324
PspCI	CACGTG	1 cut(s)	3032
PspFI	CCCAGC	4 cut(s)	1724, 1877, 2036, 2231
PspGI	CCWGG	4 cut(s)	449, 562, 2398, 3324
PspN4I	GGNNCC	8 cut(s)	30, 856, 1557, 1883, 2445, 2979, 3043, 3142
PspOMI	GGGCCC	1 cut(s)	1555
PspPPI	RGGWCCY	2 cut(s)	2443, 2522
PsrI	GAACNNNNNNTAC	4 cut(s)	942, 974, 1273, 1305
PstNI	CAGNNNCTG	1 cut(s)	1870
PsuI	RGATCY	4 cut(s)	735, 745, 841, 1150
PteI	GCGCGC	1 cut(s)	238
RsaI	GTAC	7 cut(s)	9, 413, 505, 825, 1244, 1888, 2674
RsaNI	GTAC	7 cut(s)	8, 412, 504, 824, 1243, 1887, 2673
RseI	CAYNNNNRTG	3 cut(s)	644, 1703, 3030
SatI	GCNGC	7 cut(s)	43, 111, 185, 499, 1109, 1769, 2394
SchI	GAGTC	6 cut(s)	11, 188, 408, 1854, 2543, 3057
ScrFI	CCNGG	4 cut(s)	451, 564, 2400, 3326
SduI	GDGCHC	3 cut(s)	554, 859, 1559
SfaNI	GCATC	5 cut(s)	1045, 1063, 1311, 2275, 2315
SfcI	CTRYAG	1 cut(s)	1188
SfuI	TTCGAA	1 cut(s)	3189
SinI	GGWCC	9 cut(s)	28, 999, 1430, 1882, 2443, 2522, 2978, 3010, 3041
SmiMI	CAYNNNNRTG	3 cut(s)	644, 1703, 3030
SmlI	CTYRAG	1 cut(s)	1112
SmoI	CTYRAG	1 cut(s)	1112
SpeI	ACTAGT	2 cut(s)	806, 1816
SphI	GCATGC	2 cut(s)	1465, 3029
SsiI	CCGC	9 cut(s)	11, 26, 111, 126, 1108, 1400, 1797, 3248, 3355
SspI	AATATT	1 cut(s)	3283
StyD4I	CCNGG	4 cut(s)	449, 562, 2398, 3324
StyI	CCWWGG	2 cut(s)	21, 129
TaaI	ACNGT	7 cut(s)	57, 712, 944, 1189, 1314, 2248, 2767
TaiI	ACGT	5 cut(s)	383, 417, 666, 2713, 3034
TaqII	GACCGA	1 cut(s)	2487
TatI	WGTACW	2 cut(s)	823, 1242
TauI	GCSGC	2 cut(s)	113, 1111
TfiI	GAWTC	6 cut(s)	222, 524, 769, 932, 2602, 2940
TscAI	CASTG	7 cut(s)	223, 324, 924, 1460, 1705, 2093, 2950
TseFI	GTSAC	8 cut(s)	334, 425, 445, 1413, 1475, 1907, 2452, 2630
TseI	GCWGC	5 cut(s)	42, 184, 498, 1768, 2393
Tsp45I	GTSAC	8 cut(s)	334, 425, 445, 1413, 1475, 1907, 2452, 2630
TspGWI	ACGGA	4 cut(s)	505, 536, 1874, 2037
TspRI	CASTG	7 cut(s)	223, 324, 924, 1460, 1705, 2093, 2950
Van91I	CCANNNNNTGG	1 cut(s)	2627
VpaK11BI	GGWCC	9 cut(s)	28, 999, 1430, 1882, 2443, 2522, 2978, 3010, 3041
XapI	RAATTY	4 cut(s)	137, 1513, 1739, 3252
XceI	RCATGY	6 cut(s)	363, 1465, 1500, 1864, 2333, 3029
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1639, 2206
XmiI	GTMKAC	2 cut(s)	1191, 2617
XmnI	GAANNNNTTC	2 cut(s)	1285, 3256
Zsp2I	ATGCAT	2 cut(s)	1022, 3027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.