Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003584

Physical Location & Seq

Genomic Coordinates Reverse (-)

17365780 .. 17390193

Gene Structure 24414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG083300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3111 bp

ATGACGTATTCTGCTCCAATAAGAGTCGATGTAGAGTACGTTGAAGGAAGTCACGATCAAAAGAGGATAGTGACTAGGAAAGCTGTCGAAATTGCAAGAATGCCTATCATGTTACGGAGTTGCTGCTGTACCTTATATGGAAAAACGGAATCCGAACTTGCAATTCTTGGTGAGTGCCCACTTGATCCTGGAGGGTATTTTATCATCAAAGGGAATGAGAAGGTGCTTTTGATACAAGAACAGCTTTCAAAAAACAGGATTATCATTGACATGGATAAGAAGGGAAACGTAAATGCTTCTGTTACAAGCAGTTCAGAGACAATTAAAAGCAAGACTGTAATTCAGATGGAAAAACAGAAGATCTATTTGGATCTTAATCAATTTTCCAAAAAGATTCCTATTATGGTGGTCATGAAGGCTATGGGAATGACTAGTGATCAAGAAGTTGTACAGATGGTTGGAAGAGATCCTCGATATGGTGCCCTGCTCATGCCATCTATTGAGGAATGCGCAAAGGAAGGTATATATACAAAAGAGCAAGCACTGCTGTATCTCGAATCAAAGGTGAAGAGGTCCATGTTTGATCGTCCTTCATCCGATAATGACTGTAAAGTAATGGCAGTTCTTCGAGATATATTTATTGCTAATGTTCCGGTATGCCGGTCCAATTTTCGTCCAAAATGCATATATGTTGCTGTCATGTTGAGGCGCATAATGGATGCAATTTTAAACAAGGATGCGATGGATGACAAGGATTATGTTGGGAACAAGCGGCTTGAGCTATCTGGGCAATCTATTTCTCTTCTGTTTGAGGATCTGTTCAAGACAATGATCTCTGAAGTTAGGAAGACTGTAGACAATATATTAACAAAGCCTAGCAGGTCTAGTCGTTTTGACTTGGCTCAGTACATACGCAAAGATAGTATTTCACATGGCCTTGAAAGAACCCTTTCTACTGGAAACTTTGATCTCAAACGGTTCAGGATGCACAGGACAGGCATGACACAGGTGCTAGCTAGGTTATCTTTCATTGGGTCTCTAGGCCAAATGACCAGAACAAAACCACAGTTTGAGAAGTCACGAAAAGTGAGTGGACCTAGAGCCTTGCAACCTAGCCAGTGGGGCATGCTTTGCCCTTGTGACACTCCAGAAGGTGAAGCATGTGGACTGGTAAAAAATTTAGCCCTGATGGCCCATGTAACAACTGATGAAGAGGAGGGCCCTCTAATATCTCTGTGCAAATGCTTGGGTGTGGAAGATTTGGAAACACTATCGGCAGAGGAGCTTCACTCACCCAATTCTTTTCTGGTTTTATTCAATGGAGACATCCTCGGAAAGCACAGGAAGCCACAGCGTTTTGCCACTGCAATGAGAAAGTTGCGTAGAGCTGGGAAGATTGGAGAATTTGTTAGCGTCTTTGTCAATGAGAAGCAGCATTGTGTTTACATTGCTTCTGATGGCGGTCGAGTTTGTCGGCCACTAGTTATCGCTGACAAGGGCATTTCAAGAGTCAAAGAATATCACATGCAGGAGCTGAATGCTGGGGTCCGTACTTTTAATGACTTTTTAAGTGACGGGTTGATCGAGTATCTTGATGTTAACGAGCAGAATAATGCTTTGATTGCTCTATACGAAGATGAGGCAACAACAGAAACTACTCATATAGAAATAGAGCCTTTCACCATCTTAGGTGTTATTGCTGGGCTAATTCCGTATCCTCACCACAATCAGTCGCCTAGAAATACTTACCAGTGTGCAATGGGGAAGCAAGCAATGGGGAATATCGCATATAACCAGCTTCGTCGGATAGACTTGCTTTACCTTCTGGTGTATCCCCAACGACCATTATTGACAACAAAGACCATTGAGCTGGTGGGCTTTGATAAACTCGGAGCTGGGCAGAATGCAACTGTTGCTGTGATGAGTTATAGTGGCTATGACATAGAGGATGCAATCGTCATGAACAAGGCATCTCTGGATCGTGGTTTTGGTCGTTGTATTCTTATGAAAAAGTTTGTTGTCGCCAATCAAAATTATAACAATAACACACAAGACAGAATAATCAGGCCAAGTAAAGATGAAGTTGATTCTGGAAAGATGCAGGTTCTCGATGATGATGGTATTGCTGCACCTGGGGAAATTATTAGATCAAATGACATCTATGTAAAGAAGCAGGTCCCTATTGTCACAAGGGGGGCTATTAGATCGGGATTAAAGGATAGTGAGTATCGGTCTGCCTTTCAAAAATATAAAGGACCTGATGGGGAGTCTTGTGTGGTGGATAAAGTAGCTCTCTTTTCTGATACACATAATAATTTATGTGTTAAAGTATTGATTCGCCATACTCGTAGACCAGAGGTTGGTGACAAGTTTAGTAGCAGACATGGGCAGAAAGGTGTTTGTGGTACAATTGTCCAGCAGGAAGATTTCCCATTTTCTGAACGTGGCATTTGCCCTGATTTAATCATGAACCCTCATGGATTTCCAAGCCGAATGACTGTTGGCAAGATGATTGAGCTTCTTGGGGGTAAAGCAGGAGTTTCATGTGGTAGGTTTCATTATGGTAGTGCCTTTGGTGAACCAAGTGGTCATGCAGACAAGGTTGAGGCTATAAGTGAAACACTTGTGAGGATGGGATTTAGCTATGATGGCAAAGACTTCTTATGCTCAGGAATCACTGGTTGCCCATTGCAAGCATATATTTTCATGGGACCAATTTACTACCAGAAGTTAAAACACATGGTCCTTGATAAAATGCATGCACGTGGTAGTGGTCCCAGAGTCAGTCTAACTAGACAGCCTACTGAGGGAAAAGCTCGTAATGGAGGACTACGAGTAGGAGAAATGGAGCGTGATTGTCTGATTGCTTATGGTGCCAGTATGTTGCTGTATGAGCGCCTAATGATCTCTAGTGATCCTTTCGAAGTTCAGGTTTGCAGAGTGTGTGGTTTATTGGGTTATTACAACCACAAGATGAAAGCGGGAATTTGTTCCTCATGCAAAAATGGGGATAATATTTCTACCATGAAGCTTCCCTATGCTTGCAAGCTCTTGATCCAGGAACTCCAGTCGATGAACATTGTTCCCCGCTTAAAACTAGCTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006383 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032501 GO:0032502 GO:0032648 GO:0032728 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0046483 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080134 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1036

Amino Acids

115.88

Weight (kDa)

8.8

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	1 - 310	1.2e-32	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	84 - 260	3.9e-22	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	336 - 400	5.2e-19	RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4	PF04566	437 - 497	2.1e-23	RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_6	PF00562	566 - 940	5e-135	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	942 - 1032	6.4e-31	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45140 AT5G45140 AT5G45140
fragaria_vesca	FvH4_5g31720 FvH4_7g03930
malus_domestica	MD14G1029000.v1.1
prunus_persica	Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1
pyrus_communis	pycom14g02710
rosa_chinensis	RchiOBHm_Chr1g0327591 RchiOBHm_Chr7g0227611
rosa_laevigata	RLG00000001632 RLG00000029981
rosa_multiflora	Rmu_co8491793.1_g000001 Rmu_sc0001772.1_g000005 Rmu_ssc0000042.1_g000027
rosa_roxburghii	Rroxscaffold_3G00232000 Rroxscaffold_4G00322550
rosa_rugosa	Rorug01G0068500 Rorug07G0242400
rosa_samantha	Rh1AG085800 Rh1BG068400 Rh1CG083300 Rh1DG090000 Rh7AG395800 Rh7BG377500 Rh7CG414500 Rh7DG391600
rosa_wichuraiana	Rw1G006690 Rw7G032920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2037
Acc16I	TGCGCA	1 cut(s)	511
Acc36I	ACCTGC	3 cut(s)	870, 2092, 2164
AccB1I	GGYRCC	2 cut(s)	479, 2873
AccB7I	CCANNNNNTGG	1 cut(s)	2360
AccI	GTMKAC	2 cut(s)	855, 2350
AciI	CCGC	4 cut(s)	772, 1461, 2981, 3088
AclWI	GGATC	7 cut(s)	179, 378, 461, 822, 1986, 2909, 3049
AcoI	YGGCCR	1 cut(s)	1475
AcsI	RAATTY	3 cut(s)	1177, 1403, 2985
AcuI	CTGAAG	1 cut(s)	858
AcvI	CACGTG	1 cut(s)	2765
AfaI	GTAC	6 cut(s)	38, 130, 450, 908, 1552, 2407
AfiI	CCNNNNNNNGG	3 cut(s)	476, 2360, 2807
AgsI	TTSAA	7 cut(s)	44, 249, 823, 941, 1318, 1506, 2243
AhlI	ACTAGT	2 cut(s)	431, 1480
AjnI	CCWGG	3 cut(s)	187, 2131, 3057
AjuI	GAANNNNNNNTTGG	2 cut(s)	350, 382
Alw26I	GTCTC	3 cut(s)	311, 1041, 1317
AlwI	GGATC	7 cut(s)	179, 378, 461, 822, 1986, 2909, 3049
AlwNI	CAGNNNCTG	1 cut(s)	1534
AoxI	GGCC	6 cut(s)	934, 1042, 1191, 1219, 1475, 2066
ApaI	GGGCCC	1 cut(s)	1223
ApeKI	GCWGC	3 cut(s)	123, 1432, 2126
ApoI	RAATTY	3 cut(s)	1177, 1403, 2985
Asp700I	GAANNNNTTC	2 cut(s)	949, 2989
AspLEI	GCGC	3 cut(s)	512, 711, 2898
AsuHPI	GGTGA	8 cut(s)	182, 577, 1166, 1284, 1672, 1712, 2375, 2588
AsuII	TTCGAA	1 cut(s)	2922
AsuNHI	GCTAGC	1 cut(s)	1012
AvaII	GGWCC	9 cut(s)	573, 663, 1094, 1546, 2176, 2255, 2711, 2743, 2774
BaeGI	GKGCMC	3 cut(s)	179, 484, 1223
BaeI	ACNNNNGTAYC	4 cut(s)	533, 566, 2397, 2430
BanI	GGYRCC	2 cut(s)	479, 2873
BanII	GRGCYC	1 cut(s)	1223
BbrPI	CACGTG	1 cut(s)	2765
BbsI	GAAGAC	1 cut(s)	854
BbvI	GCAGC	3 cut(s)	110, 1444, 2113
BciT130I	CCWGG	3 cut(s)	189, 2133, 3059
BciVI	GTATCC	2 cut(s)	1725, 1842
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	3 cut(s)	311, 1041, 1317
BcuI	ACTAGT	2 cut(s)	431, 1480
BfmI	CTRYAG	1 cut(s)	852
BfoI	RGCGCY	1 cut(s)	2899
BfuAI	ACCTGC	3 cut(s)	870, 2092, 2164
BfuI	GTATCC	2 cut(s)	1725, 1842
BglI	GCCNNNNNGGC	2 cut(s)	1122, 1190
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	4 cut(s)	124, 773, 1433, 2127
BlsI	GCNGC	4 cut(s)	125, 774, 1434, 2128
Bme1390I	CCNGG	3 cut(s)	189, 2133, 3059
Bme18I	GGWCC	9 cut(s)	573, 663, 1094, 1546, 2176, 2255, 2711, 2743, 2774
BmiI	GGNNCC	7 cut(s)	481, 1221, 1547, 2178, 2712, 2776, 2875
BmrFI	CCNGG	3 cut(s)	189, 2133, 3059
BmsI	GCATC	6 cut(s)	709, 727, 975, 1939, 1979, 2088
BmtI	GCTAGC	1 cut(s)	1016
BpiI	GAAGAC	1 cut(s)	854
BplI	GAGNNNNNCTC	4 cut(s)	1274, 1306, 1314, 1346
BpmI	CTGGAG	3 cut(s)	210, 1131, 3050
Bpu10I	CCTNAGC	1 cut(s)	2668
Bpu14I	TTCGAA	1 cut(s)	2922
BpuEI	CTTGAG	1 cut(s)	797
BsaAI	YACGTR	1 cut(s)	2765
BsaBI	GATNNNNATC	1 cut(s)	375
BsaI	GGTCTC	1 cut(s)	1041
BsaJI	CCNNGG	2 cut(s)	1330, 2132
BsaWI	WCCGGW	1 cut(s)	652
BsaXI	ACNNNNNCTCC	2 cut(s)	1392, 1422
Bsc4I	CCNNNNNNNGG	3 cut(s)	476, 2360, 2807
Bse118I	RCCGGY	1 cut(s)	660
Bse1I	ACTGG	7 cut(s)	961, 1117, 1173, 1750, 2683, 2877, 3067
Bse3DI	GCAATG	5 cut(s)	1374, 1446, 1764, 1779, 2687
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	3 cut(s)	189, 2133, 3059
BseDI	CCNNGG	2 cut(s)	1330, 2132
BseGI	GGATG	8 cut(s)	593, 724, 742, 751, 990, 1326, 1954, 2637
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	3 cut(s)	476, 2360, 2807
BseMI	GCAATG	5 cut(s)	1374, 1446, 1764, 1779, 2687
BseMII	CTCAG	3 cut(s)	917, 2682, 2796
BseNI	ACTGG	7 cut(s)	961, 1117, 1173, 1750, 2683, 2877, 3067
BseRI	GAGGAG	2 cut(s)	1229, 1295
BseSI	GKGCMC	3 cut(s)	179, 484, 1223
BseXI	GCAGC	3 cut(s)	110, 1444, 2113
BseYI	CCCAGC	4 cut(s)	1388, 1541, 1700, 1895
BsgI	GTGCAG	1 cut(s)	2112
Bsh1285I	CGRYCG	1 cut(s)	1465
BshFI	GGCC	6 cut(s)	936, 1044, 1193, 1221, 1477, 2068
BshNI	GGYRCC	2 cut(s)	479, 2873
BsiEI	CGRYCG	1 cut(s)	1465
BsiSI	CCGG	2 cut(s)	653, 661
BslFI	GGGAC	3 cut(s)	2162, 2724, 2760
BslI	CCNNNNNNNGG	3 cut(s)	476, 2360, 2807
BsmAI	GTCTC	3 cut(s)	311, 1041, 1317
BsmFI	GGGAC	3 cut(s)	2162, 2724, 2760
BsmI	GAATGC	4 cut(s)	105, 512, 1543, 1909
BsnI	GGCC	6 cut(s)	936, 1044, 1193, 1221, 1477, 2068
Bso31I	GGTCTC	1 cut(s)	1041
Bsp119I	TTCGAA	1 cut(s)	2922
Bsp120I	GGGCCC	1 cut(s)	1219
Bsp1286I	GDGCHC	3 cut(s)	179, 484, 1223
Bsp1407I	TGTACA	1 cut(s)	448
BspACI	CCGC	4 cut(s)	772, 1461, 2981, 3088
BspANI	GGCC	6 cut(s)	936, 1044, 1193, 1221, 1477, 2068
BspCNI	CTCAG	3 cut(s)	916, 2681, 2797
BspHI	TCATGA	3 cut(s)	411, 1959, 2466
BspLI	GGNNCC	7 cut(s)	481, 1221, 1547, 2178, 2712, 2776, 2875
BspMI	ACCTGC	3 cut(s)	870, 2092, 2164
BspOI	GCTAGC	1 cut(s)	1016
BspPI	GGATC	7 cut(s)	179, 378, 461, 822, 1986, 2909, 3049
BspT104I	TTCGAA	1 cut(s)	2922
BspT107I	GGYRCC	2 cut(s)	479, 2873
BspTNI	GGTCTC	1 cut(s)	1041
BsrDI	GCAATG	5 cut(s)	1374, 1446, 1764, 1779, 2687
BsrFI	RCCGGY	1 cut(s)	660
BsrGI	TGTACA	1 cut(s)	448
BsrI	ACTGG	7 cut(s)	961, 1117, 1173, 1750, 2683, 2877, 3067
BssAI	RCCGGY	1 cut(s)	660
BssECI	CCNNGG	2 cut(s)	1330, 2132
Bst2UI	CCWGG	3 cut(s)	189, 2133, 3059
Bst4CI	ACNGT	7 cut(s)	337, 608, 853, 978, 1068, 1912, 2500
Bst6I	CTCTTC	4 cut(s)	457, 563, 807, 1206
BstAPI	GCANNNNNTGC	3 cut(s)	544, 1131, 1913
BstAUI	TGTACA	1 cut(s)	448
BstBAI	YACGTR	1 cut(s)	2765
BstBI	TTCGAA	1 cut(s)	2922
BstC8I	GCNNGC	8 cut(s)	540, 1014, 1127, 1770, 2694, 2760, 3043, 3047
BstDEI	CTNAG	4 cut(s)	903, 1687, 2668, 2805
BstF5I	GGATG	8 cut(s)	593, 724, 742, 751, 990, 1326, 1954, 2637
BstH2I	RGCGCY	1 cut(s)	2899
BstHHI	GCGC	3 cut(s)	512, 711, 2898
BstMAI	GTCTC	3 cut(s)	311, 1041, 1317
BstMCI	CGRYCG	1 cut(s)	1465
BstNI	CCWGG	3 cut(s)	189, 2133, 3059
BstNSI	RCATGY	4 cut(s)	1129, 1164, 1528, 2762
BstSCI	CCNGG	3 cut(s)	187, 2131, 3057
BstSFI	CTRYAG	1 cut(s)	852
BstSLI	GKGCMC	3 cut(s)	179, 484, 1223
BstV1I	GCAGC	3 cut(s)	110, 1444, 2113
BstV2I	GAAGAC	1 cut(s)	854
BstX2I	RGATCY	4 cut(s)	360, 370, 466, 814
BstXI	CCANNNNNNTGG	1 cut(s)	1870
BstYI	RGATCY	4 cut(s)	360, 370, 466, 814
BsuI	GTATCC	2 cut(s)	1725, 1842
BsuRI	GGCC	6 cut(s)	936, 1044, 1193, 1221, 1477, 2068
BtgZI	GCGATG	1 cut(s)	755
BtsCI	GGATG	8 cut(s)	593, 724, 742, 751, 990, 1326, 1954, 2637
BtsI	GCAGTG	2 cut(s)	542, 1362
BtsIMutI	CAGTG	5 cut(s)	542, 1124, 1362, 1757, 2676
BveI	ACCTGC	3 cut(s)	870, 2092, 2164
Cac8I	GCNNGC	8 cut(s)	540, 1014, 1127, 1770, 2694, 2760, 3043, 3047
CaiI	CAGNNNCTG	1 cut(s)	1534
CciI	TCATGA	3 cut(s)	411, 1959, 2466
CfoI	GCGC	3 cut(s)	512, 711, 2898
Cfr10I	RCCGGY	1 cut(s)	660
CseI	GACGC	1 cut(s)	1402
Csp6I	GTAC	6 cut(s)	37, 129, 449, 907, 1551, 2406
CviQI	GTAC	6 cut(s)	37, 129, 449, 907, 1551, 2406
DdeI	CTNAG	4 cut(s)	903, 1687, 2668, 2805
DraI	TTTAAA	1 cut(s)	729
EaeI	YGGCCR	1 cut(s)	1475
Eam1104I	CTCTTC	4 cut(s)	457, 563, 807, 1206
EarI	CTCTTC	4 cut(s)	457, 563, 807, 1206
Eco24I	GRGCYC	1 cut(s)	1223
Eco31I	GGTCTC	1 cut(s)	1041
Eco47I	GGWCC	9 cut(s)	573, 663, 1094, 1546, 2176, 2255, 2711, 2743, 2774
Eco57I	CTGAAG	1 cut(s)	858
Eco72I	CACGTG	1 cut(s)	2765
EcoO109I	RGGNCCY	4 cut(s)	1219, 1220, 2176, 2255
EcoRII	CCWGG	3 cut(s)	187, 2131, 3057
EcoT22I	ATGCAT	2 cut(s)	686, 2760
EcoT38I	GRGCYC	1 cut(s)	1223
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	3 cut(s)	2162, 2724, 2760
FauI	CCCGC	2 cut(s)	2974, 3095
FbaI	TGATCA	1 cut(s)	436
FblI	GTMKAC	2 cut(s)	855, 2350
Fnu4HI	GCNGC	4 cut(s)	124, 773, 1433, 2127
FokI	GGATG	8 cut(s)	580, 731, 749, 758, 997, 1313, 1961, 2644
FriOI	GRGCYC	1 cut(s)	1223
Fsp4HI	GCNGC	4 cut(s)	124, 773, 1433, 2127
FspI	TGCGCA	1 cut(s)	511
GlaI	GCGC	3 cut(s)	511, 710, 2897
GluI	GCNGC	4 cut(s)	124, 773, 1433, 2127
GsaI	CCCAGC	4 cut(s)	1392, 1545, 1704, 1899
GsuI	CTGGAG	3 cut(s)	210, 1131, 3050
HaeII	RGCGCY	1 cut(s)	2899
HaeIII	GGCC	6 cut(s)	936, 1044, 1193, 1221, 1477, 2068
HapII	CCGG	2 cut(s)	653, 661
HgaI	GACGC	1 cut(s)	1402
HhaI	GCGC	3 cut(s)	512, 711, 2898
Hin6I	GCGC	3 cut(s)	510, 709, 2896
HinP1I	GCGC	3 cut(s)	510, 709, 2896
HincII	GTYRAC	1 cut(s)	1600
HindII	GTYRAC	1 cut(s)	1600
HindIII	AAGCTT	2 cut(s)	3029, 3105
HpaI	GTTAAC	1 cut(s)	1600
HpaII	CCGG	2 cut(s)	653, 661
HphI	GGTGA	8 cut(s)	182, 577, 1166, 1284, 1672, 1712, 2375, 2588
Hpy166II	GTNNAC	7 cut(s)	856, 1094, 1166, 1444, 1600, 2351, 2579
Hpy8I	GTNNAC	7 cut(s)	856, 1094, 1166, 1444, 1600, 2351, 2579
Hpy99I	CGWCG	1 cut(s)	1806
HpyAV	CCTTC	8 cut(s)	38, 214, 274, 409, 512, 600, 1145, 1832
HpyCH4III	ACNGT	7 cut(s)	337, 608, 853, 978, 1068, 1912, 2500
HpyCH4IV	ACGT	5 cut(s)	5, 39, 288, 2443, 2764
HpyF3I	CTNAG	4 cut(s)	903, 1687, 2668, 2805
HpySE526I	ACGT	5 cut(s)	5, 39, 288, 2443, 2764
HspAI	GCGC	3 cut(s)	510, 709, 2896
Ksp22I	TGATCA	1 cut(s)	436
KspAI	GTTAAC	1 cut(s)	1600
LmnI	GCTCC	5 cut(s)	19, 1282, 1531, 1892, 2848
Lsp1109I	GCAGC	3 cut(s)	110, 1444, 2113
LweI	GCATC	6 cut(s)	709, 727, 975, 1939, 1979, 2088
MaeII	ACGT	5 cut(s)	5, 39, 288, 2443, 2764
MfeI	CAATTG	1 cut(s)	2409
MflI	RGATCY	4 cut(s)	360, 370, 466, 814
MhlI	GDGCHC	3 cut(s)	179, 484, 1223
MlyI	GAGTC	4 cut(s)	33, 1518, 2276, 2790
MmeI	TCCRAC	2 cut(s)	439, 1784
Mph1103I	ATGCAT	2 cut(s)	686, 2760
MroXI	GAANNNNTTC	2 cut(s)	949, 2989
MslI	CAYNNNNRTG	3 cut(s)	269, 1367, 2763
MspI	CCGG	2 cut(s)	653, 661
MspR9I	CCNGG	3 cut(s)	189, 2133, 3059
MunI	CAATTG	1 cut(s)	2409
Mva1269I	GAATGC	4 cut(s)	105, 512, 1543, 1909
MvaI	CCWGG	3 cut(s)	189, 2133, 3059
NheI	GCTAGC	1 cut(s)	1012
NlaIV	GGNNCC	7 cut(s)	481, 1221, 1547, 2178, 2712, 2776, 2875
NmuCI	GTSAC	7 cut(s)	50, 70, 1077, 1139, 1571, 2185, 2363
NsbI	TGCGCA	1 cut(s)	511
NsiI	ATGCAT	2 cut(s)	686, 2760
NspI	RCATGY	4 cut(s)	1129, 1164, 1528, 2762
NspV	TTCGAA	1 cut(s)	2922
PaeI	GCATGC	2 cut(s)	1129, 2762
PagI	TCATGA	3 cut(s)	411, 1959, 2466
PcsI	WCGNNNNNNNCGW	2 cut(s)	1581, 2344
PctI	GAATGC	4 cut(s)	105, 512, 1543, 1909
PdmI	GAANNNNTTC	2 cut(s)	949, 2989
PfeI	GAWTC	6 cut(s)	149, 394, 557, 2087, 2335, 2673
PflMI	CCANNNNNTGG	1 cut(s)	2360
PfoI	TCCNGGA	2 cut(s)	187, 3057
PkrI	GCNGC	4 cut(s)	125, 774, 1434, 2128
PleI	GAGTC	4 cut(s)	32, 1517, 2275, 2789
PmaCI	CACGTG	1 cut(s)	2765
PmlI	CACGTG	1 cut(s)	2765
PpsI	GAGTC	4 cut(s)	32, 1517, 2275, 2789
Ppu21I	YACGTR	1 cut(s)	2765
PpuMI	RGGWCCY	2 cut(s)	2176, 2255
PsiI	TTATAA	1 cut(s)	2037
Psp5II	RGGWCCY	2 cut(s)	2176, 2255
Psp6I	CCWGG	3 cut(s)	187, 2131, 3057
PspCI	CACGTG	1 cut(s)	2765
PspFI	CCCAGC	4 cut(s)	1388, 1541, 1700, 1895
PspGI	CCWGG	3 cut(s)	187, 2131, 3057
PspN4I	GGNNCC	7 cut(s)	481, 1221, 1547, 2178, 2712, 2776, 2875
PspOMI	GGGCCC	1 cut(s)	1219
PspPPI	RGGWCCY	2 cut(s)	2176, 2255
PsrI	GAACNNNNNNTAC	4 cut(s)	606, 638, 937, 969
PstNI	CAGNNNCTG	1 cut(s)	1534
PsuI	RGATCY	4 cut(s)	360, 370, 466, 814
RsaI	GTAC	6 cut(s)	38, 130, 450, 908, 1552, 2407
RsaNI	GTAC	6 cut(s)	37, 129, 449, 907, 1551, 2406
RseI	CAYNNNNRTG	3 cut(s)	269, 1367, 2763
SatI	GCNGC	4 cut(s)	124, 773, 1433, 2127
SchI	GAGTC	4 cut(s)	33, 1518, 2276, 2790
ScrFI	CCNGG	3 cut(s)	189, 2133, 3059
SduI	GDGCHC	3 cut(s)	179, 484, 1223
SfaNI	GCATC	6 cut(s)	709, 727, 975, 1939, 1979, 2088
SfcI	CTRYAG	1 cut(s)	852
SfuI	TTCGAA	1 cut(s)	2922
SinI	GGWCC	9 cut(s)	573, 663, 1094, 1546, 2176, 2255, 2711, 2743, 2774
SmiMI	CAYNNNNRTG	3 cut(s)	269, 1367, 2763
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
SpeI	ACTAGT	2 cut(s)	431, 1480
SphI	GCATGC	2 cut(s)	1129, 2762
SsiI	CCGC	4 cut(s)	772, 1461, 2981, 3088
SspI	AATATT	1 cut(s)	3016
StyD4I	CCNGG	3 cut(s)	187, 2131, 3057
TaaI	ACNGT	7 cut(s)	337, 608, 853, 978, 1068, 1912, 2500
TaiI	ACGT	5 cut(s)	8, 42, 291, 2446, 2767
TaqII	GACCGA	1 cut(s)	2220
TatI	WGTACW	2 cut(s)	448, 906
TauI	GCSGC	1 cut(s)	775
TfiI	GAWTC	6 cut(s)	149, 394, 557, 2087, 2335, 2673
TscAI	CASTG	5 cut(s)	549, 1124, 1369, 1757, 2683
TseFI	GTSAC	7 cut(s)	50, 70, 1077, 1139, 1571, 2185, 2363
TseI	GCWGC	3 cut(s)	123, 1432, 2126
Tsp45I	GTSAC	7 cut(s)	50, 70, 1077, 1139, 1571, 2185, 2363
TspGWI	ACGGA	4 cut(s)	130, 161, 1538, 1701
TspRI	CASTG	5 cut(s)	549, 1124, 1369, 1757, 2683
Van91I	CCANNNNNTGG	1 cut(s)	2360
VpaK11BI	GGWCC	9 cut(s)	573, 663, 1094, 1546, 2176, 2255, 2711, 2743, 2774
XapI	RAATTY	3 cut(s)	1177, 1403, 2985
XceI	RCATGY	4 cut(s)	1129, 1164, 1528, 2762
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1303, 1870
XmiI	GTMKAC	2 cut(s)	855, 2350
XmnI	GAANNNNTTC	2 cut(s)	949, 2989
Zsp2I	ATGCAT	2 cut(s)	686, 2760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.