Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006188

Physical Location & Seq

Genomic Coordinates Reverse (-)

23846956 .. 23859854

Gene Structure 12899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33030.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTCTCTCACGTGCTCTCATCAAACACCCGTCCTCTTCTCCTCAAACCCACCTCACACTCGTCTCCCAAAACCTTCCCTCTTCCCCACCACTTCACTTCTGAAGCTTCCGCCGACCTTGTTCAGAAATGGCAGCACCTCTGTTACTCACAGAAACAACAGATTTCAACTCCATGCAAACTCATCCAGTGACTCGGACGAAAGACAACAAGTTAAACCATCATCAACCAGCCTCCTTTCTTTTCTTTGTCCCTTGCTCAAGCTCTTCTCCGGAGGAGATCCCTCTCGAGAACGGAACTTTACCTTGGAGGTAGCCACATCTTCCTTGTCTACGTTGGCTAGATACCCTTGGGGATCAAGATCAAATAATTCAGACAGCCAGGACGTCACTACCTTGGATCCTCCTATGCGTCTGCAGCTTTTTGAATTCGAGGCCTGCCCTTTTTGCAGGAGGGTTCGTGAAGCTATGACTGAACTAGATCTGTCAGCAGAGGTGTATCCTTGTCCAAAAGGTTCGATAAGACACAGAGAATTGGTTAACAGATCTGGTGGAAAAGAGCAATTTCCTTTTCTTATTGATCCGAATACCGGCATATCAATGTATGAAAGCGGTGAAATCGTGAGATACCTTTTTCAGCAATATGGGAAAGGCAGAAAACCTTCACCGGGGCTTTTGGAAAGTACATTGCTGACAGGGTGGATTCCTACAATACTTCGAGCAGGTAGAGGAATGACATTGTGGGAAAGGGTGAGCTTAGAGCCACCACCTGAAAAGCTGGAGCTTTACTCATACGAAAATAATCCGTATGCACGAATTGTGCGTGAGGCACTTTGTGAGTTGGAGCTTCCGTACATCCTACAGAATGTAGGACAAGGGTCCCTGCGGTCTAAGCTGCTTGTTGATGCATCAGGGTCCAAAGAGGTTCCCTACTTGATTGATCCCAACACTGGTACTCATGTTGGTGACTACAAGAAGATCCTGTCTTACTTGTTCCAGACATATTCAGTAGCCGCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

GST_N_3

Protein Analysis

340

Amino Acids

38.04

Weight (kDa)

8.66

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	127 - 202	1.1e-18	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	132 - 197	3.3e-07	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	248 - 322	1.4e-07	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10000 AT4G10000
fragaria_vesca	FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030
malus_domestica	MD15G1399300.v1.1
prunus_persica	Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1
pyrus_communis	pycom15g35830
rosa_chinensis	RchiOBHm_Chr7g0231111
rosa_laevigata	RLG00000001433
rosa_multiflora	Rmu_co8504477.1_g000001 Rmu_sc0012403.1_g000013
rosa_roxburghii	Rroxscaffold_3G00229480 Rroxscaffold_3G00229550
rosa_rugosa	Rorug07G0264700.1
rosa_samantha	Rh7AG417500 Rh7BG393700 Rh7CG437500 Rh7DG411500
rosa_wichuraiana	Rw7G034570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	387
Acc36I	ACCTGC	1 cut(s)	710
AccI	GTMKAC	1 cut(s)	329
AccIII	TCCGGA	1 cut(s)	269
AciI	CCGC	4 cut(s)	110, 609, 883, 1011
AclWI	GGATC	7 cut(s)	272, 361, 392, 405, 572, 932, 970
AcsI	RAATTY	1 cut(s)	425
AcuI	CTGAAG	1 cut(s)	122
AcvI	CACGTG	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	384
AdeI	CACNNNGTG	1 cut(s)	833
AfaI	GTAC	3 cut(s)	682, 851, 952
AfiI	CCNNNNNNNGG	3 cut(s)	587, 665, 947
AgsI	TTSAA	2 cut(s)	167, 425
AjnI	CCWGG	1 cut(s)	378
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	9 cut(s)	106, 262, 418, 464, 753, 775, 781, 844, 892
AluI	AGCT	9 cut(s)	106, 262, 418, 464, 753, 775, 781, 844, 892
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	2 cut(s)	9, 68
AlwI	GGATC	7 cut(s)	272, 361, 392, 405, 572, 932, 970
Ama87I	CYCGRG	1 cut(s)	285
Aor13HI	TCCGGA	1 cut(s)	269
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	3 cut(s)	132, 415, 892
ApoI	RAATTY	1 cut(s)	425
Asp700I	GAANNNNTTC	1 cut(s)	658
AspS9I	GGNCC	2 cut(s)	876, 912
AsuC2I	CCSGG	1 cut(s)	666
AsuHPI	GGTGA	4 cut(s)	623, 654, 760, 974
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	2 cut(s)	876, 912
BaeI	ACNNNNGTAYC	2 cut(s)	942, 975
BamHI	GGATCC	1 cut(s)	397
BbrPI	CACGTG	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	3 cut(s)	144, 427, 879
BccI	CCATC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	380
BciVI	GTATCC	1 cut(s)	507
BcnI	CCSGG	1 cut(s)	666
BcoDI	GTCTC	2 cut(s)	9, 68
BfaI	CTAG	2 cut(s)	339, 476
BfmI	CTRYAG	2 cut(s)	413, 857
BfuAI	ACCTGC	1 cut(s)	710
BfuI	GTATCC	1 cut(s)	507
BglII	AGATCT	2 cut(s)	478, 542
BisI	GCNGC	4 cut(s)	133, 416, 893, 1011
BlsI	GCNGC	4 cut(s)	134, 417, 894, 1012
Bme1390I	CCNGG	2 cut(s)	380, 666
Bme18I	GGWCC	2 cut(s)	876, 912
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	2 cut(s)	876, 912
BmiI	GGNNCC	5 cut(s)	399, 877, 878, 913, 924
BmrFI	CCNGG	2 cut(s)	380, 666
BmsI	GCATC	2 cut(s)	892, 914
BoxI	GACNNNNGTC	1 cut(s)	874
BplI	GAGNNNNNCTC	2 cut(s)	770, 802
BpmI	CTGGAG	1 cut(s)	797
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	666
BsaAI	YACGTR	1 cut(s)	12
BsaBI	GATNNNNATC	1 cut(s)	358
BsaHI	GRCGYC	1 cut(s)	384
BsaJI	CCNNGG	4 cut(s)	303, 347, 393, 665
BsaWI	WCCGGW	1 cut(s)	269
BsaXI	ACNNNNNCTCC	4 cut(s)	442, 472, 833, 863
Bsc4I	CCNNNNNNNGG	3 cut(s)	587, 665, 947
Bse118I	RCCGGY	1 cut(s)	587
Bse1I	ACTGG	2 cut(s)	186, 952
Bse3DI	GCAATG	1 cut(s)	683
Bse8I	GATNNNNATC	1 cut(s)	358
BseAI	TCCGGA	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	4 cut(s)	303, 347, 393, 665
BseGI	GGATG	2 cut(s)	182, 852
BseJI	GATNNNNATC	1 cut(s)	358
BseLI	CCNNNNNNNGG	3 cut(s)	587, 665, 947
BseMI	GCAATG	1 cut(s)	683
BseNI	ACTGG	2 cut(s)	186, 952
BseRI	GAGGAG	2 cut(s)	31, 288
BseXI	GCAGC	3 cut(s)	144, 427, 879
BshFI	GGCC	1 cut(s)	434
BsiHKAI	GWGCWC	1 cut(s)	17
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	3 cut(s)	270, 588, 665
BslFI	GGGAC	2 cut(s)	234, 862
BslI	CCNNNNNNNGG	3 cut(s)	587, 665, 947
BsmAI	GTCTC	2 cut(s)	9, 68
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	2 cut(s)	234, 862
BsnI	GGCC	1 cut(s)	434
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp13I	TCCGGA	1 cut(s)	269
Bsp143I	GATC	9 cut(s)	277, 353, 359, 397, 478, 542, 577, 937, 975
BspACI	CCGC	4 cut(s)	110, 609, 883, 1011
BspANI	GGCC	1 cut(s)	434
BspEI	TCCGGA	1 cut(s)	269
BspLI	GGNNCC	5 cut(s)	399, 877, 878, 913, 924
BspMAI	CTGCAG	1 cut(s)	417
BspMI	ACCTGC	1 cut(s)	710
BspPI	GGATC	7 cut(s)	272, 361, 392, 405, 572, 932, 970
BspQI	GCTCTTC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	683
BsrFI	RCCGGY	1 cut(s)	587
BsrI	ACTGG	2 cut(s)	186, 952
BssAI	RCCGGY	1 cut(s)	587
BssECI	CCNNGG	4 cut(s)	303, 347, 393, 665
BssMI	GATC	9 cut(s)	277, 353, 359, 397, 478, 542, 577, 937, 975
BssNI	GRCGYC	1 cut(s)	384
BssT1I	CCWWGG	3 cut(s)	303, 347, 393
Bst2UI	CCWGG	1 cut(s)	380
Bst6I	CTCTTC	3 cut(s)	41, 86, 269
BstACI	GRCGYC	1 cut(s)	384
BstBAI	YACGTR	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	436
BstDEI	CTNAG	2 cut(s)	754, 888
BstF5I	GGATG	2 cut(s)	182, 852
BstKTI	GATC	9 cut(s)	280, 356, 362, 400, 481, 545, 580, 940, 978
BstMAI	GTCTC	2 cut(s)	9, 68
BstMBI	GATC	9 cut(s)	277, 353, 359, 397, 478, 542, 577, 937, 975
BstMWI	GCNNNNNNNGC	3 cut(s)	415, 444, 889
BstNI	CCWGG	1 cut(s)	380
BstPAI	GACNNNNGTC	1 cut(s)	874
BstSCI	CCNGG	2 cut(s)	378, 664
BstSFI	CTRYAG	2 cut(s)	413, 857
BstV1I	GCAGC	3 cut(s)	144, 427, 879
BstX2I	RGATCY	5 cut(s)	277, 397, 478, 542, 975
BstYI	RGATCY	5 cut(s)	277, 397, 478, 542, 975
BsuI	GTATCC	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	434
BtsCI	GGATG	2 cut(s)	182, 852
BtsIMutI	CAGTG	2 cut(s)	193, 945
BveI	ACCTGC	1 cut(s)	710
Cac8I	GCNNGC	1 cut(s)	436
Cfr10I	RCCGGY	1 cut(s)	587
Cfr13I	GGNCC	2 cut(s)	876, 912
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	3 cut(s)	681, 850, 951
CviAII	CATG	2 cut(s)	173, 956
CviQI	GTAC	3 cut(s)	681, 850, 951
DdeI	CTNAG	2 cut(s)	754, 888
DpnI	GATC	9 cut(s)	279, 355, 361, 399, 480, 544, 579, 939, 977
DpnII	GATC	9 cut(s)	277, 353, 359, 397, 478, 542, 577, 937, 975
DraIII	CACNNNGTG	1 cut(s)	833
Eam1104I	CTCTTC	3 cut(s)	41, 86, 269
EarI	CTCTTC	3 cut(s)	41, 86, 269
EciI	GGCGGA	1 cut(s)	99
Eco130I	CCWWGG	3 cut(s)	303, 347, 393
Eco147I	AGGCCT	1 cut(s)	434
Eco47I	GGWCC	2 cut(s)	876, 912
Eco57I	CTGAAG	1 cut(s)	122
Eco72I	CACGTG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	876
EcoRI	GAATTC	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	3 cut(s)	303, 347, 393
EcoT22I	ATGCAT	1 cut(s)	907
ErhI	CCWWGG	3 cut(s)	303, 347, 393
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	2 cut(s)	176, 959
FaqI	GGGAC	2 cut(s)	234, 862
FatI	CATG	2 cut(s)	172, 955
FblI	GTMKAC	1 cut(s)	329
Fnu4HI	GCNGC	4 cut(s)	133, 416, 893, 1011
FokI	GGATG	2 cut(s)	169, 839
Fsp4HI	GCNGC	4 cut(s)	133, 416, 893, 1011
FspBI	CTAG	2 cut(s)	339, 476
GluI	GCNGC	4 cut(s)	133, 416, 893, 1011
GsuI	CTGGAG	1 cut(s)	797
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	3 cut(s)	270, 588, 665
HgaI	GACGC	1 cut(s)	398
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	2 cut(s)	176, 959
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	2 cut(s)	191, 700
HpaI	GTTAAC	1 cut(s)	538
HpaII	CCGG	3 cut(s)	270, 588, 665
HphI	GGTGA	4 cut(s)	623, 654, 760, 974
Hpy166II	GTNNAC	2 cut(s)	330, 538
Hpy188I	TCNGA	5 cut(s)	102, 125, 196, 373, 582
Hpy188III	TCNNGA	7 cut(s)	270, 285, 287, 357, 458, 619, 994
Hpy8I	GTNNAC	2 cut(s)	330, 538
HpyAV	CCTTC	2 cut(s)	84, 669
HpyCH4IV	ACGT	3 cut(s)	11, 332, 384
HpyCH4V	TGCA	5 cut(s)	176, 415, 447, 809, 905
HpyF10VI	GCNNNNNNNGC	3 cut(s)	415, 444, 889
HpyF3I	CTNAG	2 cut(s)	754, 888
HpySE526I	ACGT	3 cut(s)	11, 332, 384
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	2 cut(s)	176, 959
KflI	GGGWCCC	1 cut(s)	876
Kpn2I	TCCGGA	1 cut(s)	269
KspAI	GTTAAC	1 cut(s)	538
Kzo9I	GATC	9 cut(s)	277, 353, 359, 397, 478, 542, 577, 937, 975
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	2 cut(s)	778, 841
Lsp1109I	GCAGC	3 cut(s)	144, 427, 879
LweI	GCATC	2 cut(s)	892, 914
MaeI	CTAG	2 cut(s)	339, 476
MaeII	ACGT	3 cut(s)	11, 332, 384
MaeIII	GTNAC	4 cut(s)	142, 188, 385, 962
MalI	GATC	9 cut(s)	279, 355, 361, 399, 480, 544, 579, 939, 977
MboI	GATC	9 cut(s)	277, 353, 359, 397, 478, 542, 577, 937, 975
MboII	GAAGA	5 cut(s)	28, 73, 256, 312, 985
MflI	RGATCY	5 cut(s)	277, 397, 478, 542, 975
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	5 cut(s)	367, 425, 530, 560, 813
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	819
Mph1103I	ATGCAT	1 cut(s)	907
MroI	TCCGGA	1 cut(s)	269
MroXI	GAANNNNTTC	1 cut(s)	658
MseI	TTAA	2 cut(s)	213, 537
MslI	CAYNNNNRTG	2 cut(s)	596, 960
MspA1I	CMGCKG	1 cut(s)	1013
MspI	CCGG	3 cut(s)	270, 588, 665
MspR9I	CCNGG	2 cut(s)	380, 666
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	3 cut(s)	415, 444, 889
NciI	CCSGG	1 cut(s)	666
NdeII	GATC	9 cut(s)	277, 353, 359, 397, 478, 542, 577, 937, 975
NlaIII	CATG	2 cut(s)	176, 959
NlaIV	GGNNCC	5 cut(s)	399, 877, 878, 913, 924
NmuCI	GTSAC	3 cut(s)	188, 385, 962
NsiI	ATGCAT	1 cut(s)	907
PaeR7I	CTCGAG	1 cut(s)	285
PceI	AGGCCT	1 cut(s)	434
PciSI	GCTCTTC	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	1 cut(s)	817
PdmI	GAANNNNTTC	1 cut(s)	658
PfeI	GAWTC	1 cut(s)	700
PkrI	GCNGC	4 cut(s)	134, 417, 894, 1012
PleI	GAGTC	1 cut(s)	185
PmaCI	CACGTG	1 cut(s)	12
PmlI	CACGTG	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	185
Ppu21I	YACGTR	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	876
PshAI	GACNNNNGTC	1 cut(s)	874
Psp5II	RGGWCCY	1 cut(s)	876
Psp6I	CCWGG	1 cut(s)	378
PspCI	CACGTG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	5 cut(s)	399, 877, 878, 913, 924
PspPI	GGNCC	2 cut(s)	876, 912
PspPPI	RGGWCCY	1 cut(s)	876
PstI	CTGCAG	1 cut(s)	417
PsuI	RGATCY	5 cut(s)	277, 397, 478, 542, 975
RsaI	GTAC	3 cut(s)	682, 851, 952
RsaNI	GTAC	3 cut(s)	681, 850, 951
RseI	CAYNNNNRTG	2 cut(s)	596, 960
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	2 cut(s)	213, 537
SatI	GCNGC	4 cut(s)	133, 416, 893, 1011
Sau3AI	GATC	9 cut(s)	277, 353, 359, 397, 478, 542, 577, 937, 975
Sau96I	GGNCC	2 cut(s)	876, 912
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	380, 666
SduI	GDGCHC	1 cut(s)	17
SfaNI	GCATC	2 cut(s)	892, 914
SfcI	CTRYAG	2 cut(s)	413, 857
Sfr274I	CTCGAG	1 cut(s)	285
SinI	GGWCC	2 cut(s)	876, 912
SlaI	CTCGAG	1 cut(s)	285
SmiMI	CAYNNNNRTG	2 cut(s)	596, 960
SmlI	CTYRAG	2 cut(s)	257, 285
SmoI	CTYRAG	2 cut(s)	257, 285
Sse9I	AATT	5 cut(s)	367, 425, 530, 560, 813
SseBI	AGGCCT	1 cut(s)	434
SsiI	CCGC	4 cut(s)	110, 609, 883, 1011
SspMI	CTAG	2 cut(s)	339, 476
StuI	AGGCCT	1 cut(s)	434
StyD4I	CCNGG	2 cut(s)	378, 664
StyI	CCWWGG	3 cut(s)	303, 347, 393
TaiI	ACGT	3 cut(s)	14, 335, 387
TaqI	TCGA	4 cut(s)	286, 429, 515, 715
TasI	AATT	5 cut(s)	367, 425, 530, 560, 813
TatI	WGTACW	1 cut(s)	680
TauI	GCSGC	1 cut(s)	1013
TfiI	GAWTC	1 cut(s)	700
Tru1I	TTAA	2 cut(s)	213, 537
Tru9I	TTAA	2 cut(s)	213, 537
TscAI	CASTG	2 cut(s)	193, 952
TseFI	GTSAC	3 cut(s)	188, 385, 962
TseI	GCWGC	3 cut(s)	132, 415, 892
Tsp45I	GTSAC	3 cut(s)	188, 385, 962
TspDTI	ATGAA	1 cut(s)	618
TspGWI	ACGGA	3 cut(s)	307, 792, 837
TspRI	CASTG	2 cut(s)	193, 952
VpaK11BI	GGWCC	2 cut(s)	876, 912
XapI	RAATTY	1 cut(s)	425
XhoI	CTCGAG	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	329
XmnI	GAANNNNTTC	1 cut(s)	658
XspI	CTAG	2 cut(s)	339, 476
ZraI	GACGTC	1 cut(s)	385
Zsp2I	ATGCAT	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.