Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006188

Physical Location & Seq

Genomic Coordinates Forward (+)

13961931 .. 13970175

Gene Structure 8245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTCTCTCACGTGCTCTCAAACACTAGTCCTCTATTCCTCAAACCCACCTCACACTAAACCTTCCCTATTCCCAACCACTCCCACTCTTCAGCTTTCGACATTCTTCAGAAATGGCAGCAACTCTGTTTCTCGCAGAAACAACAGATTTCAGTTCCATGCAAACTCCACTGACTCAGACAACGAATTGGGAACTAGGCAAGTTGCTGCCGTTTCCAACCCATCATCCACCAGCCTTCTCTCTTTTCTTTGCCCCTTGCTCAAACTCTTCTCCGGAGGAGATCCCTCACAAGAACGGAACTTTACCTTGGAGGTAGCCACATCTTCCTTGTCTACCTTGGCTAGATTCCCATGGGGATCAAGATCTCTATCAAATAATTCGGACAGCCAGGAGGTCACTACCTTGGATCCTCCTATGCGTCTGCAGCTTTTTGAATTCGAGGCCTGCCCTTTTTGCAGGAGGGTTCGCGAAGCTATGACTGAGCTAGATCTTTCAGCAGAGGTGTATCCTTGTCCAAAGGGTTCGATAAGACACAGAGAATTGGTTAACAGATCTGGTGGAAAAGAGCAATTTCCTTTTCTCATTGATCCAAATACCGGTATTTCAATGTATGAAAGTGGTGAAATCGTGAGATACCTATTTCAGCAATATGGGAAAGGCAGAAAACCTTCACCGGGGCTTTTGGAAAGTACATTGCTTACAGGGTGGATGCCGACAATATTTCGAGCAGGTAGAGGAATGGCATTGTGGGAAAGGGCGACTGTAGAGGCACCACCTGAAAAGCTGGAACTTTACTCGTATGAAAATAATCCGTATGCACGAATTGTGCGTGAGGCACTTTGTGAGTTGGAGCTTCCTTACATCCTACAGAATGTAGGAGAAGGGTCCCTGCGGTTAAAGTTGCTTGTTGATGCATCGGGGTCCAAAGAGGTTCCCTACTTGATTGATCCCAACACTGGTACTCATGTTGGTGACTACAAGAAGATCCTGTCCTACTTGTTCCAGACATATTCAGTAGCCGCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

GST_N_3

Protein Analysis

342

Amino Acids

38.21

Weight (kDa)

6.91

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	143 - 218	1.2e-18	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	148 - 213	3.6e-07	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	264 - 338	5.7e-07	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10000 AT4G10000
fragaria_vesca	FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030
malus_domestica	MD15G1399300.v1.1
prunus_persica	Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1
pyrus_communis	pycom15g35830
rosa_chinensis	RchiOBHm_Chr7g0231111
rosa_laevigata	RLG00000001433
rosa_multiflora	Rmu_co8504477.1_g000001 Rmu_sc0012403.1_g000013
rosa_roxburghii	Rroxscaffold_3G00229480 Rroxscaffold_3G00229550
rosa_rugosa	Rorug07G0264700.1
rosa_samantha	Rh7AG417500 Rh7BG393700 Rh7CG437500 Rh7DG411500
rosa_wichuraiana	Rw7G034570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	719
AccB1I	GGYRCC	1 cut(s)	769
AccI	GTMKAC	1 cut(s)	332
AccII	CGCG	1 cut(s)	468
AccIII	TCCGGA	1 cut(s)	272
AciI	CCGC	2 cut(s)	892, 1020
AclWI	GGATC	7 cut(s)	275, 364, 401, 414, 581, 941, 979
AcsI	RAATTY	1 cut(s)	434
AcuI	CTGAAG	2 cut(s)	74, 91
AcvI	CACGTG	1 cut(s)	12
AdeI	CACNNNGTG	1 cut(s)	842
AfaI	GTAC	2 cut(s)	691, 961
AfiI	CCNNNNNNNGG	3 cut(s)	596, 674, 956
AgeI	ACCGGT	1 cut(s)	596
AgsI	TTSAA	2 cut(s)	434, 606
AhlI	ACTAGT	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	387
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	6 cut(s)	94, 427, 473, 484, 784, 853
AluI	AGCT	6 cut(s)	94, 427, 473, 484, 784, 853
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	7 cut(s)	275, 364, 401, 414, 581, 941, 979
Aor13HI	TCCGGA	1 cut(s)	272
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	3 cut(s)	117, 206, 424
ApoI	RAATTY	1 cut(s)	434
AsiGI	ACCGGT	1 cut(s)	596
Asp700I	GAANNNNTTC	1 cut(s)	667
AspS9I	GGNCC	2 cut(s)	885, 921
AsuC2I	CCSGG	1 cut(s)	675
AsuHPI	GGTGA	3 cut(s)	632, 663, 983
AvaII	GGWCC	2 cut(s)	885, 921
BaeI	ACNNNNGTAYC	2 cut(s)	951, 984
BamHI	GGATCC	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	769
BbrPI	CACGTG	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	3 cut(s)	129, 193, 436
BccI	CCATC	1 cut(s)	229
BceAI	ACGGC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	389
BciVI	GTATCC	1 cut(s)	516
BcnI	CCSGG	1 cut(s)	675
BcoDI	GTCTC	1 cut(s)	9
BcuI	ACTAGT	1 cut(s)	25
BfaI	CTAG	4 cut(s)	26, 195, 342, 485
BfmI	CTRYAG	3 cut(s)	422, 762, 866
BfuAI	ACCTGC	1 cut(s)	719
BfuI	GTATCC	1 cut(s)	516
BglII	AGATCT	3 cut(s)	362, 487, 551
BisI	GCNGC	4 cut(s)	118, 207, 425, 1020
BlsI	GCNGC	4 cut(s)	119, 208, 426, 1021
Bme1390I	CCNGG	2 cut(s)	389, 675
Bme18I	GGWCC	2 cut(s)	885, 921
BmgT120I	GGNCC	2 cut(s)	885, 921
BmiI	GGNNCC	6 cut(s)	408, 771, 886, 887, 922, 933
BmrFI	CCNGG	2 cut(s)	389, 675
BmsI	GCATC	3 cut(s)	699, 901, 923
BpuMI	CCSGG	1 cut(s)	675
BsaAI	YACGTR	1 cut(s)	12
BsaBI	GATNNNNATC	2 cut(s)	361, 367
BsaJI	CCNNGG	5 cut(s)	306, 336, 350, 402, 674
BsaWI	WCCGGW	2 cut(s)	272, 596
Bsc4I	CCNNNNNNNGG	3 cut(s)	596, 674, 956
Bse118I	RCCGGY	1 cut(s)	596
Bse1I	ACTGG	1 cut(s)	961
Bse3DI	GCAATG	1 cut(s)	692
Bse8I	GATNNNNATC	2 cut(s)	361, 367
BseAI	TCCGGA	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	5 cut(s)	306, 336, 350, 402, 674
BseGI	GGATG	3 cut(s)	224, 714, 861
BseJI	GATNNNNATC	2 cut(s)	361, 367
BseLI	CCNNNNNNNGG	3 cut(s)	596, 674, 956
BseMI	GCAATG	1 cut(s)	692
BseMII	CTCAG	2 cut(s)	189, 471
BseNI	ACTGG	1 cut(s)	961
BseRI	GAGGAG	1 cut(s)	291
BseXI	GCAGC	3 cut(s)	129, 193, 436
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	443
BshNI	GGYRCC	1 cut(s)	769
BshTI	ACCGGT	1 cut(s)	596
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	3 cut(s)	273, 597, 674
BslFI	GGGAC	1 cut(s)	871
BslI	CCNNNNNNNGG	3 cut(s)	596, 674, 956
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	871
BsnI	GGCC	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp13I	TCCGGA	1 cut(s)	272
Bsp143I	GATC	9 cut(s)	280, 356, 362, 406, 487, 551, 586, 946, 984
Bsp19I	CCATGG	1 cut(s)	350
Bsp68I	TCGCGA	1 cut(s)	468
BspACI	CCGC	2 cut(s)	892, 1020
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	2 cut(s)	188, 472
BspEI	TCCGGA	1 cut(s)	272
BspFNI	CGCG	1 cut(s)	468
BspLI	GGNNCC	6 cut(s)	408, 771, 886, 887, 922, 933
BspMAI	CTGCAG	1 cut(s)	426
BspMI	ACCTGC	1 cut(s)	719
BspPI	GGATC	7 cut(s)	275, 364, 401, 414, 581, 941, 979
BspT107I	GGYRCC	1 cut(s)	769
BsrDI	GCAATG	1 cut(s)	692
BsrFI	RCCGGY	1 cut(s)	596
BsrI	ACTGG	1 cut(s)	961
BssAI	RCCGGY	1 cut(s)	596
BssECI	CCNNGG	5 cut(s)	306, 336, 350, 402, 674
BssMI	GATC	9 cut(s)	280, 356, 362, 406, 487, 551, 586, 946, 984
BssT1I	CCWWGG	4 cut(s)	306, 336, 350, 402
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	1 cut(s)	763
Bst6I	CTCTTC	2 cut(s)	93, 272
BstBAI	YACGTR	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	2 cut(s)	175, 480
BstDSI	CCRYGG	1 cut(s)	350
BstF5I	GGATG	3 cut(s)	224, 714, 861
BstFNI	CGCG	1 cut(s)	468
BstKTI	GATC	9 cut(s)	283, 359, 365, 409, 490, 554, 589, 949, 987
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	9 cut(s)	280, 356, 362, 406, 487, 551, 586, 946, 984
BstMWI	GCNNNNNNNGC	2 cut(s)	424, 453
BstNI	CCWGG	1 cut(s)	389
BstSCI	CCNGG	2 cut(s)	387, 673
BstSFI	CTRYAG	3 cut(s)	422, 762, 866
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	3 cut(s)	129, 193, 436
BstX2I	RGATCY	6 cut(s)	280, 362, 406, 487, 551, 984
BstYI	RGATCY	6 cut(s)	280, 362, 406, 487, 551, 984
BsuI	GTATCC	1 cut(s)	516
BsuRI	GGCC	1 cut(s)	443
BtgI	CCRYGG	1 cut(s)	350
BtsCI	GGATG	3 cut(s)	224, 714, 861
BtsIMutI	CAGTG	2 cut(s)	168, 954
BtuMI	TCGCGA	1 cut(s)	468
BveI	ACCTGC	1 cut(s)	719
Cac8I	GCNNGC	1 cut(s)	445
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	2 cut(s)	885, 921
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	2 cut(s)	690, 960
CspAI	ACCGGT	1 cut(s)	596
CviAII	CATG	3 cut(s)	158, 351, 965
CviQI	GTAC	2 cut(s)	690, 960
DdeI	CTNAG	2 cut(s)	175, 480
DpnI	GATC	9 cut(s)	282, 358, 364, 408, 489, 553, 588, 948, 986
DpnII	GATC	9 cut(s)	280, 356, 362, 406, 487, 551, 586, 946, 984
DraIII	CACNNNGTG	1 cut(s)	842
Eam1104I	CTCTTC	2 cut(s)	93, 272
EarI	CTCTTC	2 cut(s)	93, 272
Eco130I	CCWWGG	4 cut(s)	306, 336, 350, 402
Eco147I	AGGCCT	1 cut(s)	443
Eco47I	GGWCC	2 cut(s)	885, 921
Eco57I	CTGAAG	2 cut(s)	74, 91
Eco72I	CACGTG	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	885
EcoRI	GAATTC	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	387
EcoT14I	CCWWGG	4 cut(s)	306, 336, 350, 402
EcoT22I	ATGCAT	1 cut(s)	916
ErhI	CCWWGG	4 cut(s)	306, 336, 350, 402
FaeI	CATG	3 cut(s)	161, 354, 968
FaqI	GGGAC	1 cut(s)	871
FatI	CATG	3 cut(s)	157, 350, 964
FblI	GTMKAC	1 cut(s)	332
Fnu4HI	GCNGC	4 cut(s)	118, 207, 425, 1020
FokI	GGATG	3 cut(s)	211, 721, 848
Fsp4HI	GCNGC	4 cut(s)	118, 207, 425, 1020
FspBI	CTAG	4 cut(s)	26, 195, 342, 485
GluI	GCNGC	4 cut(s)	118, 207, 425, 1020
HaeIII	GGCC	1 cut(s)	443
HapII	CCGG	3 cut(s)	273, 597, 674
HgaI	GACGC	1 cut(s)	407
Hin1II	CATG	3 cut(s)	161, 354, 968
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HinfI	GANTC	2 cut(s)	173, 345
HpaI	GTTAAC	1 cut(s)	547
HpaII	CCGG	3 cut(s)	273, 597, 674
HphI	GGTGA	3 cut(s)	632, 663, 983
Hpy166II	GTNNAC	2 cut(s)	333, 547
Hpy188I	TCNGA	3 cut(s)	110, 178, 382
Hpy188III	TCNNGA	5 cut(s)	273, 360, 467, 628, 1003
Hpy8I	GTNNAC	2 cut(s)	333, 547
HpyAV	CCTTC	4 cut(s)	72, 245, 678, 875
HpyCH4III	ACNGT	1 cut(s)	763
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	5 cut(s)	161, 424, 456, 818, 914
HpyF10VI	GCNNNNNNNGC	2 cut(s)	424, 453
HpyF3I	CTNAG	2 cut(s)	175, 480
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	161, 354, 968
KflI	GGGWCCC	1 cut(s)	885
Kpn2I	TCCGGA	1 cut(s)	272
KspAI	GTTAAC	1 cut(s)	547
Kzo9I	GATC	9 cut(s)	280, 356, 362, 406, 487, 551, 586, 946, 984
LmnI	GCTCC	1 cut(s)	850
Lsp1109I	GCAGC	3 cut(s)	129, 193, 436
LweI	GCATC	3 cut(s)	699, 901, 923
MaeI	CTAG	4 cut(s)	26, 195, 342, 485
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	2 cut(s)	394, 971
MalI	GATC	9 cut(s)	282, 358, 364, 408, 489, 553, 588, 948, 986
MboI	GATC	9 cut(s)	280, 356, 362, 406, 487, 551, 586, 946, 984
MboII	GAAGA	5 cut(s)	80, 97, 259, 315, 994
MflI	RGATCY	6 cut(s)	280, 362, 406, 487, 551, 984
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	6 cut(s)	185, 376, 434, 539, 569, 822
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	2 cut(s)	240, 828
Mph1103I	ATGCAT	1 cut(s)	916
MroI	TCCGGA	1 cut(s)	272
MroXI	GAANNNNTTC	1 cut(s)	667
MseI	TTAA	2 cut(s)	546, 896
MslI	CAYNNNNRTG	1 cut(s)	969
MspA1I	CMGCKG	1 cut(s)	1022
MspI	CCGG	3 cut(s)	273, 597, 674
MspR9I	CCNGG	2 cut(s)	389, 675
MvaI	CCWGG	1 cut(s)	389
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	2 cut(s)	424, 453
NciI	CCSGG	1 cut(s)	675
NcoI	CCATGG	1 cut(s)	350
NdeII	GATC	9 cut(s)	280, 356, 362, 406, 487, 551, 586, 946, 984
NlaIII	CATG	3 cut(s)	161, 354, 968
NlaIV	GGNNCC	6 cut(s)	408, 771, 886, 887, 922, 933
NmuCI	GTSAC	2 cut(s)	394, 971
NruI	TCGCGA	1 cut(s)	468
NsiI	ATGCAT	1 cut(s)	916
PceI	AGGCCT	1 cut(s)	443
PcsI	WCGNNNNNNNCGW	1 cut(s)	826
PdmI	GAANNNNTTC	1 cut(s)	667
PfeI	GAWTC	1 cut(s)	345
PinAI	ACCGGT	1 cut(s)	596
PkrI	GCNGC	4 cut(s)	119, 208, 426, 1021
PleI	GAGTC	1 cut(s)	167
PmaCI	CACGTG	1 cut(s)	12
PmlI	CACGTG	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	885
Psp5II	RGGWCCY	1 cut(s)	885
Psp6I	CCWGG	1 cut(s)	387
PspCI	CACGTG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	6 cut(s)	408, 771, 886, 887, 922, 933
PspPI	GGNCC	2 cut(s)	885, 921
PspPPI	RGGWCCY	1 cut(s)	885
PstI	CTGCAG	1 cut(s)	426
PsuI	RGATCY	6 cut(s)	280, 362, 406, 487, 551, 984
RruI	TCGCGA	1 cut(s)	468
RsaI	GTAC	2 cut(s)	691, 961
RsaNI	GTAC	2 cut(s)	690, 960
RseI	CAYNNNNRTG	1 cut(s)	969
SaqAI	TTAA	2 cut(s)	546, 896
SatI	GCNGC	4 cut(s)	118, 207, 425, 1020
Sau3AI	GATC	9 cut(s)	280, 356, 362, 406, 487, 551, 586, 946, 984
Sau96I	GGNCC	2 cut(s)	885, 921
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	389, 675
SduI	GDGCHC	1 cut(s)	17
SfaNI	GCATC	3 cut(s)	699, 901, 923
SfcI	CTRYAG	3 cut(s)	422, 762, 866
SinI	GGWCC	2 cut(s)	885, 921
SmiMI	CAYNNNNRTG	1 cut(s)	969
SpeI	ACTAGT	1 cut(s)	25
Sse9I	AATT	6 cut(s)	185, 376, 434, 539, 569, 822
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	2 cut(s)	892, 1020
SspI	AATATT	1 cut(s)	720
SspMI	CTAG	4 cut(s)	26, 195, 342, 485
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	387, 673
StyI	CCWWGG	4 cut(s)	306, 336, 350, 402
TaaI	ACNGT	1 cut(s)	763
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	4 cut(s)	98, 438, 524, 724
TasI	AATT	6 cut(s)	185, 376, 434, 539, 569, 822
TatI	WGTACW	1 cut(s)	689
TauI	GCSGC	1 cut(s)	1022
TfiI	GAWTC	1 cut(s)	345
Tru1I	TTAA	2 cut(s)	546, 896
Tru9I	TTAA	2 cut(s)	546, 896
TscAI	CASTG	2 cut(s)	175, 961
TseFI	GTSAC	2 cut(s)	394, 971
TseI	GCWGC	3 cut(s)	117, 206, 424
Tsp45I	GTSAC	2 cut(s)	394, 971
TspDTI	ATGAA	2 cut(s)	627, 816
TspGWI	ACGGA	2 cut(s)	310, 801
TspRI	CASTG	2 cut(s)	175, 961
VpaK11BI	GGWCC	2 cut(s)	885, 921
XapI	RAATTY	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	667
XspI	CTAG	4 cut(s)	26, 195, 342, 485
Zsp2I	ATGCAT	1 cut(s)	916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.