Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006188

Physical Location & Seq

Genomic Coordinates Reverse (-)

43466854 .. 43473889

Gene Structure 7036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG393700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTCTCTAACATTCTCTCAAACACTAGTCCTCTATTCCTCAGACCCACCTCACACTTGTCTCACTTCAATTCGGAATCTTTCGCCAACATTCTACAGAAATGGCAGCAACTCTGTTTCTCGCAGAAACAACAGATTTCAGTTCCATGCAAACTCCACTGACTCAGACGACGAATTGGGAACTAGGCAAGTTGCTGCCGTTTCCAACCCATCATCCACCAGCCTTCTCTCTTTTCTTTGCCCCTTGCTCAAACTCTTCTCCGGAGGAGATCCCTCACAAGAACGGAACTTTACCTTGGAGGTAGCCACATCTTCCTTGTCTACCTTGGCTAGATTCCCTTGGGGATCAAGATCTCTATCAAACCAGGAAGTCACTACCTTGGATCCTCCTATGCGTCTGCAGCTTTTTGAATTCGAGGCCTGCCCTTTTTGCAGGAGGGTTCGCGAAGCTATGACTGAGCTAGATCTTTCAGCAGAGGTGTATCCTTGTCCAAAAGGTTCGATAAGACACAGAGGCTTGGTTAACAGATCTGGTGGAAAAGAGCAATTTCCTTTTCTCATTGATCCAAATACCGGTTTTTCAATGTATGAAAGCGGTGAAATCGTGAGATACCTATTCCAGCAATATGGGAAAGGCAGAAAACCTTCACCGGGGCTTTTGGAAAGTACATTGCTTACAGGGTGGATGCCGACAATATTTCGAGCAGGGAGAGGAATGGCATTATGGGAAAGGGCTACTGTAGAGCCACCACCTGAAAAGCTGGAACTTTACTCGTACGAAAATAATCCGTATGCACGAATTGTGCGTGAGGCACTTTGTGAGTTGGAGCTTCCTTACATCCTACAGAATGTAGGAGAAGGGTCCCTGCGGTTAAAGCTGCTTGTTGATGCATCGGGGTCCAAAGAGCCAGGCCTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

GST_N_3

Protein Analysis

306

Amino Acids

34.21

Weight (kDa)

6.85

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	135 - 210	3.1e-18	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	140 - 205	5.3e-07	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10000 AT4G10000
fragaria_vesca	FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030
malus_domestica	MD15G1399300.v1.1
prunus_persica	Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1
pyrus_communis	pycom15g35830
rosa_chinensis	RchiOBHm_Chr7g0231111
rosa_laevigata	RLG00000001433
rosa_multiflora	Rmu_co8504477.1_g000001 Rmu_sc0012403.1_g000013
rosa_roxburghii	Rroxscaffold_3G00229480 Rroxscaffold_3G00229550
rosa_rugosa	Rorug07G0264700.1
rosa_samantha	Rh7AG417500 Rh7BG393700 Rh7CG437500 Rh7DG411500
rosa_wichuraiana	Rw7G034570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	320
AccII	CGCG	1 cut(s)	444
AccIII	TCCGGA	1 cut(s)	260
AciI	CCGC	2 cut(s)	594, 868
AclWI	GGATC	5 cut(s)	263, 352, 377, 390, 557
AcsI	RAATTY	1 cut(s)	410
AdeI	CACNNNGTG	1 cut(s)	818
AfaI	GTAC	2 cut(s)	667, 776
AfiI	CCNNNNNNNGG	2 cut(s)	572, 650
AgeI	ACCGGT	1 cut(s)	572
AgsI	TTSAA	3 cut(s)	69, 410, 582
AhlI	ACTAGT	1 cut(s)	25
AjnI	CCWGG	2 cut(s)	363, 907
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	6 cut(s)	403, 449, 460, 760, 829, 877
AluI	AGCT	6 cut(s)	403, 449, 460, 760, 829, 877
Alw26I	GTCTC	2 cut(s)	9, 65
AlwI	GGATC	5 cut(s)	263, 352, 377, 390, 557
Aor13HI	TCCGGA	1 cut(s)	260
AoxI	GGCC	2 cut(s)	417, 910
ApeKI	GCWGC	4 cut(s)	105, 194, 400, 877
ApoI	RAATTY	1 cut(s)	410
AsiGI	ACCGGT	1 cut(s)	572
Asp700I	GAANNNNTTC	1 cut(s)	643
AspS9I	GGNCC	2 cut(s)	861, 897
AsuC2I	CCSGG	1 cut(s)	651
AsuHPI	GGTGA	2 cut(s)	608, 639
AvaII	GGWCC	2 cut(s)	861, 897
BamHI	GGATCC	1 cut(s)	382
BbvI	GCAGC	4 cut(s)	117, 181, 412, 864
BccI	CCATC	1 cut(s)	217
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	2 cut(s)	365, 909
BciVI	GTATCC	1 cut(s)	492
BcnI	CCSGG	1 cut(s)	651
BcoDI	GTCTC	2 cut(s)	9, 65
BcuI	ACTAGT	1 cut(s)	25
BfaI	CTAG	4 cut(s)	26, 183, 330, 461
BfmI	CTRYAG	4 cut(s)	94, 398, 738, 842
BfuI	GTATCC	1 cut(s)	492
BglII	AGATCT	3 cut(s)	350, 463, 527
BisI	GCNGC	4 cut(s)	106, 195, 401, 878
BlsI	GCNGC	4 cut(s)	107, 196, 402, 879
Bme1390I	CCNGG	3 cut(s)	365, 651, 909
Bme18I	GGWCC	2 cut(s)	861, 897
BmgT120I	GGNCC	2 cut(s)	861, 897
BmiI	GGNNCC	4 cut(s)	384, 862, 863, 898
BmrFI	CCNGG	3 cut(s)	365, 651, 909
BmsI	GCATC	3 cut(s)	675, 877, 899
BpuMI	CCSGG	1 cut(s)	651
BsaBI	GATNNNNATC	2 cut(s)	349, 355
BsaJI	CCNNGG	5 cut(s)	294, 324, 338, 378, 650
BsaWI	WCCGGW	2 cut(s)	260, 572
Bsc4I	CCNNNNNNNGG	2 cut(s)	572, 650
Bse118I	RCCGGY	1 cut(s)	572
Bse3DI	GCAATG	1 cut(s)	668
Bse8I	GATNNNNATC	2 cut(s)	349, 355
BseAI	TCCGGA	1 cut(s)	260
BseBI	CCWGG	2 cut(s)	365, 909
BseDI	CCNNGG	5 cut(s)	294, 324, 338, 378, 650
BseGI	GGATG	3 cut(s)	212, 690, 837
BseJI	GATNNNNATC	2 cut(s)	349, 355
BseLI	CCNNNNNNNGG	2 cut(s)	572, 650
BseMI	GCAATG	1 cut(s)	668
BseMII	CTCAG	3 cut(s)	54, 177, 447
BseRI	GAGGAG	1 cut(s)	279
BseXI	GCAGC	4 cut(s)	117, 181, 412, 864
Bsh1236I	CGCG	1 cut(s)	444
BshFI	GGCC	2 cut(s)	419, 912
BshTI	ACCGGT	1 cut(s)	572
BsiSI	CCGG	3 cut(s)	261, 573, 650
BsiWI	CGTACG	1 cut(s)	774
BslFI	GGGAC	1 cut(s)	847
BslI	CCNNNNNNNGG	2 cut(s)	572, 650
BsmAI	GTCTC	2 cut(s)	9, 65
BsmFI	GGGAC	1 cut(s)	847
BsnI	GGCC	2 cut(s)	419, 912
Bsp13I	TCCGGA	1 cut(s)	260
Bsp143I	GATC	7 cut(s)	268, 344, 350, 382, 463, 527, 562
Bsp68I	TCGCGA	1 cut(s)	444
BspACI	CCGC	2 cut(s)	594, 868
BspANI	GGCC	2 cut(s)	419, 912
BspCNI	CTCAG	3 cut(s)	53, 176, 448
BspEI	TCCGGA	1 cut(s)	260
BspFNI	CGCG	1 cut(s)	444
BspLI	GGNNCC	4 cut(s)	384, 862, 863, 898
BspMAI	CTGCAG	1 cut(s)	402
BspPI	GGATC	5 cut(s)	263, 352, 377, 390, 557
BsrDI	GCAATG	1 cut(s)	668
BsrFI	RCCGGY	1 cut(s)	572
BssAI	RCCGGY	1 cut(s)	572
BssECI	CCNNGG	5 cut(s)	294, 324, 338, 378, 650
BssMI	GATC	7 cut(s)	268, 344, 350, 382, 463, 527, 562
BssT1I	CCWWGG	4 cut(s)	294, 324, 338, 378
Bst2UI	CCWGG	2 cut(s)	365, 909
Bst4CI	ACNGT	1 cut(s)	739
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	4 cut(s)	40, 163, 456, 918
BstF5I	GGATG	3 cut(s)	212, 690, 837
BstFNI	CGCG	1 cut(s)	444
BstKTI	GATC	7 cut(s)	271, 347, 353, 385, 466, 530, 565
BstMAI	GTCTC	2 cut(s)	9, 65
BstMBI	GATC	7 cut(s)	268, 344, 350, 382, 463, 527, 562
BstMWI	GCNNNNNNNGC	3 cut(s)	400, 429, 874
BstNI	CCWGG	2 cut(s)	365, 909
BstSCI	CCNGG	3 cut(s)	363, 649, 907
BstSFI	CTRYAG	4 cut(s)	94, 398, 738, 842
BstUI	CGCG	1 cut(s)	444
BstV1I	GCAGC	4 cut(s)	117, 181, 412, 864
BstX2I	RGATCY	5 cut(s)	268, 350, 382, 463, 527
BstXI	CCANNNNNNTGG	1 cut(s)	626
BstYI	RGATCY	5 cut(s)	268, 350, 382, 463, 527
BsuI	GTATCC	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	419, 912
BtsCI	GGATG	3 cut(s)	212, 690, 837
BtsIMutI	CAGTG	1 cut(s)	156
BtuMI	TCGCGA	1 cut(s)	444
Cac8I	GCNNGC	1 cut(s)	421
Cfr10I	RCCGGY	1 cut(s)	572
Cfr13I	GGNCC	2 cut(s)	861, 897
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	2 cut(s)	666, 775
CspAI	ACCGGT	1 cut(s)	572
CviAII	CATG	1 cut(s)	146
CviQI	GTAC	2 cut(s)	666, 775
DdeI	CTNAG	4 cut(s)	40, 163, 456, 918
DpnI	GATC	7 cut(s)	270, 346, 352, 384, 465, 529, 564
DpnII	GATC	7 cut(s)	268, 344, 350, 382, 463, 527, 562
DraIII	CACNNNGTG	1 cut(s)	818
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	4 cut(s)	294, 324, 338, 378
Eco147I	AGGCCT	2 cut(s)	419, 912
Eco47I	GGWCC	2 cut(s)	861, 897
EcoO109I	RGGNCCY	1 cut(s)	861
EcoRI	GAATTC	1 cut(s)	410
EcoRII	CCWGG	2 cut(s)	363, 907
EcoT14I	CCWWGG	4 cut(s)	294, 324, 338, 378
EcoT22I	ATGCAT	1 cut(s)	892
ErhI	CCWWGG	4 cut(s)	294, 324, 338, 378
FaeI	CATG	1 cut(s)	149
FaiI	YATR	7 cut(s)	147, 392, 452, 588, 627, 724, 792
FaqI	GGGAC	1 cut(s)	847
FatI	CATG	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	4 cut(s)	106, 195, 401, 878
FokI	GGATG	3 cut(s)	199, 697, 824
Fsp4HI	GCNGC	4 cut(s)	106, 195, 401, 878
FspBI	CTAG	4 cut(s)	26, 183, 330, 461
GluI	GCNGC	4 cut(s)	106, 195, 401, 878
HaeIII	GGCC	2 cut(s)	419, 912
HapII	CCGG	3 cut(s)	261, 573, 650
HgaI	GACGC	1 cut(s)	383
Hin1II	CATG	1 cut(s)	149
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HinfI	GANTC	3 cut(s)	76, 161, 333
HpaI	GTTAAC	1 cut(s)	523
HpaII	CCGG	3 cut(s)	261, 573, 650
HphI	GGTGA	2 cut(s)	608, 639
Hpy166II	GTNNAC	2 cut(s)	321, 523
Hpy188I	TCNGA	3 cut(s)	43, 75, 166
Hpy188III	TCNNGA	4 cut(s)	261, 348, 443, 604
Hpy8I	GTNNAC	2 cut(s)	321, 523
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	3 cut(s)	233, 654, 851
HpyCH4III	ACNGT	1 cut(s)	739
HpyCH4V	TGCA	5 cut(s)	149, 400, 432, 794, 890
HpyF10VI	GCNNNNNNNGC	3 cut(s)	400, 429, 874
HpyF3I	CTNAG	4 cut(s)	40, 163, 456, 918
Hsp92II	CATG	1 cut(s)	149
KflI	GGGWCCC	1 cut(s)	861
Kpn2I	TCCGGA	1 cut(s)	260
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	7 cut(s)	268, 344, 350, 382, 463, 527, 562
LmnI	GCTCC	1 cut(s)	826
Lsp1109I	GCAGC	4 cut(s)	117, 181, 412, 864
LweI	GCATC	3 cut(s)	675, 877, 899
MaeI	CTAG	4 cut(s)	26, 183, 330, 461
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	7 cut(s)	270, 346, 352, 384, 465, 529, 564
MboI	GATC	7 cut(s)	268, 344, 350, 382, 463, 527, 562
MboII	GAAGA	2 cut(s)	247, 303
MflI	RGATCY	5 cut(s)	268, 350, 382, 463, 527
MluCI	AATT	5 cut(s)	69, 173, 410, 545, 798
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	2 cut(s)	228, 804
Mph1103I	ATGCAT	1 cut(s)	892
MroI	TCCGGA	1 cut(s)	260
MroXI	GAANNNNTTC	1 cut(s)	643
MseI	TTAA	2 cut(s)	522, 872
MspI	CCGG	3 cut(s)	261, 573, 650
MspR9I	CCNGG	3 cut(s)	365, 651, 909
MvaI	CCWGG	2 cut(s)	365, 909
MvnI	CGCG	1 cut(s)	444
MwoI	GCNNNNNNNGC	3 cut(s)	400, 429, 874
NciI	CCSGG	1 cut(s)	651
NdeII	GATC	7 cut(s)	268, 344, 350, 382, 463, 527, 562
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	4 cut(s)	384, 862, 863, 898
NmuCI	GTSAC	1 cut(s)	370
NruI	TCGCGA	1 cut(s)	444
NsiI	ATGCAT	1 cut(s)	892
PceI	AGGCCT	2 cut(s)	419, 912
PcsI	WCGNNNNNNNCGW	1 cut(s)	802
PdmI	GAANNNNTTC	1 cut(s)	643
PfeI	GAWTC	2 cut(s)	76, 333
Pfl23II	CGTACG	1 cut(s)	774
PinAI	ACCGGT	1 cut(s)	572
PkrI	GCNGC	4 cut(s)	107, 196, 402, 879
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	861
Psp5II	RGGWCCY	1 cut(s)	861
Psp6I	CCWGG	2 cut(s)	363, 907
PspGI	CCWGG	2 cut(s)	363, 907
PspLI	CGTACG	1 cut(s)	774
PspN4I	GGNNCC	4 cut(s)	384, 862, 863, 898
PspPI	GGNCC	2 cut(s)	861, 897
PspPPI	RGGWCCY	1 cut(s)	861
PstI	CTGCAG	1 cut(s)	402
PsuI	RGATCY	5 cut(s)	268, 350, 382, 463, 527
RruI	TCGCGA	1 cut(s)	444
RsaI	GTAC	2 cut(s)	667, 776
RsaNI	GTAC	2 cut(s)	666, 775
SaqAI	TTAA	2 cut(s)	522, 872
SatI	GCNGC	4 cut(s)	106, 195, 401, 878
Sau3AI	GATC	7 cut(s)	268, 344, 350, 382, 463, 527, 562
Sau96I	GGNCC	2 cut(s)	861, 897
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	3 cut(s)	365, 651, 909
SfaNI	GCATC	3 cut(s)	675, 877, 899
SfcI	CTRYAG	4 cut(s)	94, 398, 738, 842
SinI	GGWCC	2 cut(s)	861, 897
SpeI	ACTAGT	1 cut(s)	25
Sse9I	AATT	5 cut(s)	69, 173, 410, 545, 798
SseBI	AGGCCT	2 cut(s)	419, 912
SsiI	CCGC	2 cut(s)	594, 868
SspI	AATATT	1 cut(s)	696
SspMI	CTAG	4 cut(s)	26, 183, 330, 461
StuI	AGGCCT	2 cut(s)	419, 912
StyD4I	CCNGG	3 cut(s)	363, 649, 907
StyI	CCWWGG	4 cut(s)	294, 324, 338, 378
TaaI	ACNGT	1 cut(s)	739
TaqI	TCGA	3 cut(s)	414, 500, 700
TasI	AATT	5 cut(s)	69, 173, 410, 545, 798
TatI	WGTACW	1 cut(s)	665
TfiI	GAWTC	2 cut(s)	76, 333
Tru1I	TTAA	2 cut(s)	522, 872
Tru9I	TTAA	2 cut(s)	522, 872
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	4 cut(s)	105, 194, 400, 877
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	1 cut(s)	603
TspGWI	ACGGA	2 cut(s)	298, 777
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	2 cut(s)	861, 897
XapI	RAATTY	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	643
XspI	CTAG	4 cut(s)	26, 183, 330, 461
Zsp2I	ATGCAT	1 cut(s)	892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.