Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006188

Physical Location & Seq

Genomic Coordinates Reverse (-)

51331669 .. 51336893

Gene Structure 5225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G034570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTCTCTAACATTCTCTCAAACACTGGTCCTCTATTCCTCAGACCCACCTCACACTTGTCTCAATTCAATTCGGAAGCTTTCGCCAACATTCTACAGAAATGGCAGCAACTCTGTTTCTCGCAGAAACAACAGATTTCAGTTCCATGCAAACTCCACTGACTCAGACGACGAATTGGGAACTAGGCAAGTTGCTGCCGTTTCCAACCCATCATCCACCAGCCTTCTCTCTTTTCTTTGCCCCTTGCTCAAACTCTTCTCCGGAGGAGATCCCTCACAAGAACGGAACTTTACCTTGGAGGTAGCCACATCTTCCTTGTCTACCTTGGCTAGATTCCCTTGGGGATCAAGATCTCTATCCAATAATTCGGACAGCCAGGAAGTCACTACCTTGGATCCTCCTCTGCGTCTGCAGCTTTTTGAATTCGAGGCCTGCCCTTTTTGCAGGAGGGTTCGTGAAGCTATGACTGAGCTAGATCTTTCAGCAGAGGTGTATCCTTGTCCAAAAGGTTCGATAAGACACAGAGAATTGGTTAACAGATCTGGTGGAAAAGAGCAATTTCCTTTTCTCATTGATCCAAATACCGGTTTTTCAATGTATGAAAGCGGTGAAATCGTGAGATACCTATTCCAGCAATATGGGAAAGGCAGAAAACCTTCACCAGGGCTTTTGGAAAGTACATTTCTTACAGGGTGGATGCCGACAATATTTCGAGCAGGGAGAGGAATGACATTATGGGAAAGGGCTACTGTAGAGCCACCACCTGAAAAGCTGGAACTTTACTCGTACGAAAATAATCCGGGCTTCAAATTGATGGGTCCTTATAGAAATTGGGAATTCAATTGGATTTGTTTGAGGATGGTGCACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

GST_N_3

Protein Analysis

290

Amino Acids

32.96

Weight (kDa)

8.2

Isoelectric Point (pI)

48.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	139 - 214	3.4e-19	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	144 - 209	9.5e-08	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10000 AT4G10000
fragaria_vesca	FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030
malus_domestica	MD15G1399300.v1.1
prunus_persica	Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1
pyrus_communis	pycom15g35830
rosa_chinensis	RchiOBHm_Chr7g0231111
rosa_laevigata	RLG00000001433
rosa_multiflora	Rmu_co8504477.1_g000001 Rmu_sc0012403.1_g000013
rosa_roxburghii	Rroxscaffold_3G00229480 Rroxscaffold_3G00229550
rosa_rugosa	Rorug07G0264700.1
rosa_samantha	Rh7AG417500 Rh7BG393700 Rh7CG437500 Rh7DG411500
rosa_wichuraiana	Rw7G034570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	320
AccIII	TCCGGA	1 cut(s)	260
AciI	CCGC	1 cut(s)	606
AclWI	GGATC	5 cut(s)	263, 352, 389, 402, 569
AcsI	RAATTY	2 cut(s)	422, 836
AfaI	GTAC	2 cut(s)	679, 788
AfiI	CCNNNNNNNGG	2 cut(s)	584, 662
AgeI	ACCGGT	1 cut(s)	584
AgsI	TTSAA	5 cut(s)	69, 422, 594, 808, 841
AjnI	CCWGG	2 cut(s)	375, 661
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	5 cut(s)	79, 415, 461, 472, 772
AluI	AGCT	5 cut(s)	79, 415, 461, 472, 772
Alw21I	GWGCWC	1 cut(s)	867
Alw26I	GTCTC	2 cut(s)	9, 65
Alw44I	GTGCAC	1 cut(s)	863
AlwI	GGATC	5 cut(s)	263, 352, 389, 402, 569
Aor13HI	TCCGGA	1 cut(s)	260
AoxI	GGCC	1 cut(s)	429
ApaLI	GTGCAC	1 cut(s)	863
ApeKI	GCWGC	3 cut(s)	105, 194, 412
ApoI	RAATTY	2 cut(s)	422, 836
AsiGI	ACCGGT	1 cut(s)	584
Asp700I	GAANNNNTTC	1 cut(s)	655
AspS9I	GGNCC	2 cut(s)	28, 818
AsuC2I	CCSGG	1 cut(s)	801
AsuHPI	GGTGA	2 cut(s)	620, 651
AvaII	GGWCC	2 cut(s)	28, 818
BaeGI	GKGCMC	1 cut(s)	867
BamHI	GGATCC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	867
BbvI	GCAGC	3 cut(s)	117, 181, 424
BccI	CCATC	3 cut(s)	217, 808, 853
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	2 cut(s)	377, 663
BciVI	GTATCC	1 cut(s)	504
BcnI	CCSGG	1 cut(s)	801
BcoDI	GTCTC	2 cut(s)	9, 65
BfaI	CTAG	3 cut(s)	183, 330, 473
BfmI	CTRYAG	3 cut(s)	94, 410, 750
BfuI	GTATCC	1 cut(s)	504
BglII	AGATCT	3 cut(s)	350, 475, 539
BisI	GCNGC	3 cut(s)	106, 195, 413
BlsI	GCNGC	3 cut(s)	107, 196, 414
Bme1390I	CCNGG	3 cut(s)	377, 663, 801
Bme18I	GGWCC	2 cut(s)	28, 818
BmgT120I	GGNCC	2 cut(s)	28, 818
BmiI	GGNNCC	2 cut(s)	396, 819
BmrFI	CCNGG	3 cut(s)	377, 663, 801
BmsI	GCATC	1 cut(s)	687
BpuMI	CCSGG	1 cut(s)	801
BsaBI	GATNNNNATC	2 cut(s)	349, 355
BsaJI	CCNNGG	5 cut(s)	294, 324, 338, 390, 662
BsaWI	WCCGGW	2 cut(s)	260, 584
BsaXI	ACNNNNNCTCC	2 cut(s)	439, 469
Bsc4I	CCNNNNNNNGG	2 cut(s)	584, 662
Bse118I	RCCGGY	1 cut(s)	584
Bse1I	ACTGG	1 cut(s)	30
Bse8I	GATNNNNATC	2 cut(s)	349, 355
BseAI	TCCGGA	1 cut(s)	260
BseBI	CCWGG	2 cut(s)	377, 663
BseDI	CCNNGG	5 cut(s)	294, 324, 338, 390, 662
BseGI	GGATG	3 cut(s)	212, 702, 864
BseJI	GATNNNNATC	2 cut(s)	349, 355
BseLI	CCNNNNNNNGG	2 cut(s)	584, 662
BseMII	CTCAG	3 cut(s)	54, 177, 459
BseNI	ACTGG	1 cut(s)	30
BseRI	GAGGAG	2 cut(s)	279, 390
BseSI	GKGCMC	1 cut(s)	867
BseXI	GCAGC	3 cut(s)	117, 181, 424
BshFI	GGCC	1 cut(s)	431
BshTI	ACCGGT	1 cut(s)	584
BsiHKAI	GWGCWC	1 cut(s)	867
BsiSI	CCGG	3 cut(s)	261, 585, 800
BsiWI	CGTACG	1 cut(s)	786
BslI	CCNNNNNNNGG	2 cut(s)	584, 662
BsmAI	GTCTC	2 cut(s)	9, 65
BsnI	GGCC	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	867
Bsp13I	TCCGGA	1 cut(s)	260
Bsp143I	GATC	7 cut(s)	268, 344, 350, 394, 475, 539, 574
BspACI	CCGC	1 cut(s)	606
BspANI	GGCC	1 cut(s)	431
BspCNI	CTCAG	3 cut(s)	53, 176, 460
BspEI	TCCGGA	1 cut(s)	260
BspLI	GGNNCC	2 cut(s)	396, 819
BspMAI	CTGCAG	1 cut(s)	414
BspPI	GGATC	5 cut(s)	263, 352, 389, 402, 569
BsrFI	RCCGGY	1 cut(s)	584
BsrI	ACTGG	1 cut(s)	30
BssAI	RCCGGY	1 cut(s)	584
BssECI	CCNNGG	5 cut(s)	294, 324, 338, 390, 662
BssMI	GATC	7 cut(s)	268, 344, 350, 394, 475, 539, 574
BssT1I	CCWWGG	4 cut(s)	294, 324, 338, 390
Bst2UI	CCWGG	2 cut(s)	377, 663
Bst4CI	ACNGT	1 cut(s)	751
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	3 cut(s)	40, 163, 468
BstENI	CCTNNNNNAGG	1 cut(s)	660
BstF5I	GGATG	3 cut(s)	212, 702, 864
BstKTI	GATC	7 cut(s)	271, 347, 353, 397, 478, 542, 577
BstMAI	GTCTC	2 cut(s)	9, 65
BstMBI	GATC	7 cut(s)	268, 344, 350, 394, 475, 539, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	412, 441
BstNI	CCWGG	2 cut(s)	377, 663
BstSCI	CCNGG	3 cut(s)	375, 661, 799
BstSFI	CTRYAG	3 cut(s)	94, 410, 750
BstSLI	GKGCMC	1 cut(s)	867
BstV1I	GCAGC	3 cut(s)	117, 181, 424
BstX2I	RGATCY	5 cut(s)	268, 350, 394, 475, 539
BstXI	CCANNNNNNTGG	1 cut(s)	638
BstYI	RGATCY	5 cut(s)	268, 350, 394, 475, 539
BsuI	GTATCC	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	431
BtsCI	GGATG	3 cut(s)	212, 702, 864
BtsIMutI	CAGTG	2 cut(s)	23, 156
Cac8I	GCNNGC	1 cut(s)	433
Cfr10I	RCCGGY	1 cut(s)	584
Cfr13I	GGNCC	2 cut(s)	28, 818
CseI	GACGC	1 cut(s)	395
Csp6I	GTAC	2 cut(s)	678, 787
CspAI	ACCGGT	1 cut(s)	584
CviAII	CATG	1 cut(s)	146
CviQI	GTAC	2 cut(s)	678, 787
DdeI	CTNAG	3 cut(s)	40, 163, 468
DpnI	GATC	7 cut(s)	270, 346, 352, 396, 477, 541, 576
DpnII	GATC	7 cut(s)	268, 344, 350, 394, 475, 539, 574
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	4 cut(s)	294, 324, 338, 390
Eco147I	AGGCCT	1 cut(s)	431
Eco47I	GGWCC	2 cut(s)	28, 818
EcoNI	CCTNNNNNAGG	1 cut(s)	660
EcoO109I	RGGNCCY	1 cut(s)	818
EcoRI	GAATTC	2 cut(s)	422, 836
EcoRII	CCWGG	2 cut(s)	375, 661
EcoT14I	CCWWGG	4 cut(s)	294, 324, 338, 390
ErhI	CCWWGG	4 cut(s)	294, 324, 338, 390
FaeI	CATG	1 cut(s)	149
FaiI	YATR	6 cut(s)	147, 464, 600, 639, 736, 825
FatI	CATG	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	3 cut(s)	106, 195, 413
FokI	GGATG	2 cut(s)	199, 709
Fsp4HI	GCNGC	3 cut(s)	106, 195, 413
FspBI	CTAG	3 cut(s)	183, 330, 473
GluI	GCNGC	3 cut(s)	106, 195, 413
HaeIII	GGCC	1 cut(s)	431
HapII	CCGG	3 cut(s)	261, 585, 800
HgaI	GACGC	1 cut(s)	395
Hin1II	CATG	1 cut(s)	149
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	2 cut(s)	161, 333
HpaI	GTTAAC	1 cut(s)	535
HpaII	CCGG	3 cut(s)	261, 585, 800
HphI	GGTGA	2 cut(s)	620, 651
Hpy166II	GTNNAC	3 cut(s)	321, 535, 865
Hpy188I	TCNGA	4 cut(s)	43, 75, 166, 370
Hpy188III	TCNNGA	4 cut(s)	261, 348, 455, 616
Hpy8I	GTNNAC	3 cut(s)	321, 535, 865
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	2 cut(s)	233, 666
HpyCH4III	ACNGT	1 cut(s)	751
HpyCH4V	TGCA	4 cut(s)	149, 412, 444, 865
HpyF10VI	GCNNNNNNNGC	2 cut(s)	412, 441
HpyF3I	CTNAG	3 cut(s)	40, 163, 468
Hsp92II	CATG	1 cut(s)	149
Kpn2I	TCCGGA	1 cut(s)	260
KspAI	GTTAAC	1 cut(s)	535
Kzo9I	GATC	7 cut(s)	268, 344, 350, 394, 475, 539, 574
Lsp1109I	GCAGC	3 cut(s)	117, 181, 424
LweI	GCATC	1 cut(s)	687
MaeI	CTAG	3 cut(s)	183, 330, 473
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	7 cut(s)	270, 346, 352, 396, 477, 541, 576
MboI	GATC	7 cut(s)	268, 344, 350, 394, 475, 539, 574
MboII	GAAGA	2 cut(s)	247, 303
MfeI	CAATTG	1 cut(s)	841
MflI	RGATCY	5 cut(s)	268, 350, 394, 475, 539
MhlI	GDGCHC	1 cut(s)	867
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	228
MroI	TCCGGA	1 cut(s)	260
MroXI	GAANNNNTTC	1 cut(s)	655
MseI	TTAA	1 cut(s)	534
MspI	CCGG	3 cut(s)	261, 585, 800
MspR9I	CCNGG	3 cut(s)	377, 663, 801
MunI	CAATTG	1 cut(s)	841
MvaI	CCWGG	2 cut(s)	377, 663
MwoI	GCNNNNNNNGC	2 cut(s)	412, 441
NciI	CCSGG	1 cut(s)	801
NdeII	GATC	7 cut(s)	268, 344, 350, 394, 475, 539, 574
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	2 cut(s)	396, 819
NmuCI	GTSAC	1 cut(s)	382
PceI	AGGCCT	1 cut(s)	431
PdmI	GAANNNNTTC	1 cut(s)	655
PfeI	GAWTC	1 cut(s)	333
Pfl23II	CGTACG	1 cut(s)	786
PinAI	ACCGGT	1 cut(s)	584
PkrI	GCNGC	3 cut(s)	107, 196, 414
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	818
Psp5II	RGGWCCY	1 cut(s)	818
Psp6I	CCWGG	2 cut(s)	375, 661
PspGI	CCWGG	2 cut(s)	375, 661
PspLI	CGTACG	1 cut(s)	786
PspN4I	GGNNCC	2 cut(s)	396, 819
PspPI	GGNCC	2 cut(s)	28, 818
PspPPI	RGGWCCY	1 cut(s)	818
PstI	CTGCAG	1 cut(s)	414
PsuI	RGATCY	5 cut(s)	268, 350, 394, 475, 539
RsaI	GTAC	2 cut(s)	679, 788
RsaNI	GTAC	2 cut(s)	678, 787
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	3 cut(s)	106, 195, 413
Sau3AI	GATC	7 cut(s)	268, 344, 350, 394, 475, 539, 574
Sau96I	GGNCC	2 cut(s)	28, 818
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	3 cut(s)	377, 663, 801
SduI	GDGCHC	1 cut(s)	867
SfaNI	GCATC	1 cut(s)	687
SfcI	CTRYAG	3 cut(s)	94, 410, 750
SinI	GGWCC	2 cut(s)	28, 818
SseBI	AGGCCT	1 cut(s)	431
SsiI	CCGC	1 cut(s)	606
SspI	AATATT	1 cut(s)	708
SspMI	CTAG	3 cut(s)	183, 330, 473
StuI	AGGCCT	1 cut(s)	431
StyD4I	CCNGG	3 cut(s)	375, 661, 799
StyI	CCWWGG	4 cut(s)	294, 324, 338, 390
TaaI	ACNGT	1 cut(s)	751
TaqI	TCGA	3 cut(s)	426, 512, 712
TatI	WGTACW	1 cut(s)	677
TfiI	GAWTC	1 cut(s)	333
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	2 cut(s)	30, 163
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	3 cut(s)	105, 194, 412
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	1 cut(s)	615
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	2 cut(s)	30, 163
VneI	GTGCAC	1 cut(s)	863
VpaK11BI	GGWCC	2 cut(s)	28, 818
XagI	CCTNNNNNAGG	1 cut(s)	660
XapI	RAATTY	2 cut(s)	422, 836
XmiI	GTMKAC	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	655
XspI	CTAG	3 cut(s)	183, 330, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.