Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8504477.1

Orthogroup ID

OG0006188

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2836

Gene Structure 2836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8504477.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 379 bp

atgtcttgtattgcgggtgttttgagggaaaggggaggagatccctcacaagaacggaactttaccttggaggtagccacatcttccttgtctaccttggctagattcccttggggatcaagatctctatccaataattcggacagccaggaagtcactaccttggatcctcctctgcgtctgcagctttttgaattcgaggcctgccctttttgcaggagggttcgtgaagctatgactgagctagatctttcagcagaggtgtatccttgtccaaaaggttcgataagacacagagaattggttaacagatctggtggaaaagagcaatttccttttcttattgatccaaataccggtttttcaatgtatgaaagcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

GST_N_3

Protein Analysis

126

Amino Acids

14.17

Weight (kDa)

5.2

Isoelectric Point (pI)

62.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10000 AT4G10000
fragaria_vesca	FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030
malus_domestica	MD15G1399300.v1.1
prunus_persica	Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1
pyrus_communis	pycom15g35830
rosa_chinensis	RchiOBHm_Chr7g0231111
rosa_laevigata	RLG00000001433
rosa_multiflora	Rmu_co8504477.1_g000001 Rmu_sc0012403.1_g000013
rosa_roxburghii	Rroxscaffold_3G00229480 Rroxscaffold_3G00229550
rosa_rugosa	Rorug07G0264700.1
rosa_samantha	Rh7AG417500 Rh7BG393700 Rh7CG437500 Rh7DG411500
rosa_wichuraiana	Rw7G034570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	92
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	5 cut(s)	35, 124, 161, 174, 341
AcsI	RAATTY	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgeI	ACCGGT	1 cut(s)	356
AgsI	TTSAA	2 cut(s)	194, 366
AjnI	CCWGG	1 cut(s)	147
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AluBI	AGCT	3 cut(s)	187, 233, 244
AluI	AGCT	3 cut(s)	187, 233, 244
AlwI	GGATC	5 cut(s)	35, 124, 161, 174, 341
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	184
ApoI	RAATTY	1 cut(s)	194
AsiGI	ACCGGT	1 cut(s)	356
BamHI	GGATCC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	149
BciVI	GTATCC	1 cut(s)	276
BfaI	CTAG	2 cut(s)	102, 245
BfmI	CTRYAG	1 cut(s)	182
BfuI	GTATCC	1 cut(s)	276
BglII	AGATCT	3 cut(s)	122, 247, 311
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	149
BsaBI	GATNNNNATC	2 cut(s)	121, 127
BsaJI	CCNNGG	4 cut(s)	66, 96, 110, 162
BsaWI	WCCGGW	1 cut(s)	356
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse118I	RCCGGY	1 cut(s)	356
Bse8I	GATNNNNATC	2 cut(s)	121, 127
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	4 cut(s)	66, 96, 110, 162
BseJI	GATNNNNATC	2 cut(s)	121, 127
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMII	CTCAG	1 cut(s)	231
BseRI	GAGGAG	2 cut(s)	51, 162
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	1 cut(s)	203
BshTI	ACCGGT	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	356
BsnI	GGCC	1 cut(s)	203
Bsp143I	GATC	7 cut(s)	40, 116, 122, 166, 247, 311, 346
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	168
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	5 cut(s)	35, 124, 161, 174, 341
BsrFI	RCCGGY	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	4 cut(s)	66, 96, 110, 162
BssMI	GATC	7 cut(s)	40, 116, 122, 166, 247, 311, 346
BssT1I	CCWWGG	4 cut(s)	66, 96, 110, 162
Bst2UI	CCWGG	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	240
BstKTI	GATC	7 cut(s)	43, 119, 125, 169, 250, 314, 349
BstMBI	GATC	7 cut(s)	40, 116, 122, 166, 247, 311, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 213
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	196
BstX2I	RGATCY	5 cut(s)	40, 122, 166, 247, 311
BstYI	RGATCY	5 cut(s)	40, 122, 166, 247, 311
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	205
Cfr10I	RCCGGY	1 cut(s)	356
CseI	GACGC	1 cut(s)	167
CspAI	ACCGGT	1 cut(s)	356
CviJI	RGCY	7 cut(s)	77, 101, 147, 187, 203, 233, 244
CviKI_1	RGCY	7 cut(s)	77, 101, 147, 187, 203, 233, 244
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	7 cut(s)	42, 118, 124, 168, 249, 313, 348
DpnII	GATC	7 cut(s)	40, 116, 122, 166, 247, 311, 346
Eco130I	CCWWGG	4 cut(s)	66, 96, 110, 162
Eco147I	AGGCCT	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	4 cut(s)	66, 96, 110, 162
ErhI	CCWWGG	4 cut(s)	66, 96, 110, 162
FaiI	YATR	2 cut(s)	236, 372
FauI	CCCGC	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	2 cut(s)	102, 245
GluI	GCNGC	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	1 cut(s)	357
HgaI	GACGC	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	1 cut(s)	105
HpaI	GTTAAC	1 cut(s)	307
HpaII	CCGG	1 cut(s)	357
Hpy166II	GTNNAC	2 cut(s)	93, 307
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	2 cut(s)	120, 227
Hpy8I	GTNNAC	2 cut(s)	93, 307
HpyCH4V	TGCA	2 cut(s)	184, 216
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 213
HpyF3I	CTNAG	1 cut(s)	240
KspAI	GTTAAC	1 cut(s)	307
Kzo9I	GATC	7 cut(s)	40, 116, 122, 166, 247, 311, 346
LpnPI	CCDG	6 cut(s)	134, 161, 202, 217, 300, 370
Lsp1109I	GCAGC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	102, 245
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	7 cut(s)	42, 118, 124, 168, 249, 313, 348
MboI	GATC	7 cut(s)	40, 116, 122, 166, 247, 311, 346
MboII	GAAGA	1 cut(s)	75
MflI	RGATCY	5 cut(s)	40, 122, 166, 247, 311
MluCI	AATT	4 cut(s)	136, 194, 299, 329
MnlI	CCTC	9 cut(s)	18, 29, 55, 64, 180, 183, 193, 213, 253
MseI	TTAA	1 cut(s)	306
MspI	CCGG	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	184, 213
NdeII	GATC	7 cut(s)	40, 116, 122, 166, 247, 311, 346
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	154
PceI	AGGCCT	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	105
PinAI	ACCGGT	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	168
PstI	CTGCAG	1 cut(s)	186
PsuI	RGATCY	5 cut(s)	40, 122, 166, 247, 311
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	7 cut(s)	40, 116, 122, 166, 247, 311, 346
ScrFI	CCNGG	1 cut(s)	149
SetI	ASST	9 cut(s)	68, 75, 98, 164, 189, 235, 246, 264, 283
SfcI	CTRYAG	1 cut(s)	182
Sse9I	AATT	4 cut(s)	136, 194, 299, 329
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	2 cut(s)	102, 245
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	4 cut(s)	66, 96, 110, 162
TaqI	TCGA	2 cut(s)	198, 284
TasI	AATT	4 cut(s)	136, 194, 299, 329
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	154
TspGWI	ACGGA	1 cut(s)	70
XapI	RAATTY	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	92
XspI	CTAG	2 cut(s)	102, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.