Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006188

Physical Location & Seq

Genomic Coordinates Forward (+)

44694995 .. 44705460

Gene Structure 10466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G546800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGACCAATAAAAAAAAAATCCCGACATCAACCTGGAGACAATATTTTAAAGATTGCGAAACGAAGAAAAACATTGCTAACCATCCAAGAATTAAGAACCAAGGTCGAAGAATGTCAGTAATATCTCTGACGTGTTCTCAGACAACACTGTGCTATTCTTCAAAGCCACCGCACAGCTTTTTGACAGATTTTGAGAACTCTGTGTTACCAAGAACTTCAATTCCAGCTTTTGCTCTGAAATTATCACCATATTCTCAAAGATTATTGAGAAATGGGAACTGGGTTTCTTGCAGAAACATATTTCATGCGAATTCTGCTGACTCAGATGCAGATACAAACGAGTTGGAAACCCAGTTGTCTCGGGAAAATGGTGCAGTTTCCAGTAATGGTGGCAACCCATCAACCAGCTTTTTATCCGTGCTCTGTCCCTTGCTCAAGCTCTTCTCCGGAGGAGATCCCTCTCAAGAACGGAACTTTACTTTGGAGGTAGCTACATCTTCATTGTCTACCTTCGCCAGATTCCCTTGGGGATCAAGATCTCTCTCGCAGAATTTGGACAGACAGGACATCACTACCTTGGATCCTCCTATGCATTTGCAGCTTTTTGAATTTGAGGCATGCCCTTTTTGCAGGAGGGTTAGAGAAGCTTTGACTGAGCTAGATCTTTCTGCAGAGGTCTATCCTTGTCCAAAAGGTTCAGTAAGACATAGAGAAATGGTTAAAGGATTTGGTGGCAAAGAGCAGTTTCCTTTTCTCATTGATCCAAATACTGGTATTTCAATGTATGAAAGTGGTGAAATTGTGAAATACCTATTTGAACAATACGGTAAAGGTAGAAAACCTACAGTGGGGCTTTTGGAAAGCACATTATTCACAGGATGGATGCCAACAATTTTTCGAGCAGGCAGAGGAATGACATTGTGGGAAAAGGCGAAGCGAGACCCACCACCCAAAAAACTGGAACTTTACTCATATGAAAATAATCCATATGCACGAATTGTGCGTGAGGCACTTTGTGAGTTGGAGCTTCCTTACATCCTTCAAAACGTGGGAGAAGGTTCCCTGCGATCAAAGTCACTGGATGCATCTGGATCCAAAGAGGTTCCTTACCTGATTGATCCCAACACTGGTACTAAAGTTGGTGACTACAAGAAGATCCTGTCTTACTTGTTCCAGACATATTCAGCAGCCACTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

GST_N_3

Protein Analysis

400

Amino Acids

44.95

Weight (kDa)

8.99

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10000 AT4G10000
fragaria_vesca	FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030
malus_domestica	MD15G1399300.v1.1
prunus_persica	Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1
pyrus_communis	pycom15g35830
rosa_chinensis	RchiOBHm_Chr7g0231111
rosa_laevigata	RLG00000001433
rosa_multiflora	Rmu_co8504477.1_g000001 Rmu_sc0012403.1_g000013
rosa_roxburghii	Rroxscaffold_3G00229480 Rroxscaffold_3G00229550
rosa_rugosa	Rorug07G0264700.1
rosa_samantha	Rh7AG417500 Rh7BG393700 Rh7CG437500 Rh7DG411500
rosa_wichuraiana	Rw7G034570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	770
AccI	GTMKAC	1 cut(s)	506
AccIII	TCCGGA	1 cut(s)	446
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	9 cut(s)	449, 538, 575, 588, 755, 1086, 1099, 1112, 1150
AcsI	RAATTY	3 cut(s)	310, 550, 608
AdeI	CACNNNGTG	1 cut(s)	1016
AfaI	GTAC	1 cut(s)	1132
AfiI	CCNNNNNNNGG	3 cut(s)	770, 848, 1127
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	6 cut(s)	162, 219, 608, 780, 818, 1043
AjiI	CACGTC	1 cut(s)	132
AjnI	CCWGG	1 cut(s)	32
AjuI	GAANNNNNNNTTGG	2 cut(s)	464, 496
AloI	GAACNNNNNNTCC	2 cut(s)	205, 237
AluBI	AGCT	9 cut(s)	177, 227, 408, 439, 491, 601, 647, 658, 1027
AluI	AGCT	9 cut(s)	177, 227, 408, 439, 491, 601, 647, 658, 1027
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	3 cut(s)	31, 363, 933
AlwI	GGATC	9 cut(s)	449, 538, 575, 588, 755, 1086, 1099, 1112, 1150
AlwNI	CAGNNNCTG	1 cut(s)	1193
Ama87I	CYCGRG	1 cut(s)	360
Aor13HI	TCCGGA	1 cut(s)	446
ApeKI	GCWGC	2 cut(s)	598, 1187
ApoI	RAATTY	3 cut(s)	310, 550, 608
AsuHPI	GGTGA	3 cut(s)	237, 806, 1154
AvaI	CYCGRG	1 cut(s)	360
BaeI	ACNNNNGTAYC	2 cut(s)	1122, 1155
BamHI	GGATCC	2 cut(s)	580, 1091
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	610
BccI	CCATC	3 cut(s)	90, 406, 873
BciT130I	CCWGG	1 cut(s)	34
BcoDI	GTCTC	3 cut(s)	31, 363, 933
BfaI	CTAG	1 cut(s)	659
BfmI	CTRYAG	2 cut(s)	669, 843
BglII	AGATCT	2 cut(s)	536, 661
BisI	GCNGC	2 cut(s)	599, 1188
BlsI	GCNGC	2 cut(s)	600, 1189
Bme1390I	CCNGG	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	360
BmgBI	CACGTC	1 cut(s)	132
BmiI	GGNNCC	4 cut(s)	582, 1060, 1093, 1104
BmrFI	CCNGG	1 cut(s)	34
BmrI	ACTGGG	2 cut(s)	289, 346
BmsI	GCATC	4 cut(s)	316, 873, 1072, 1094
BmuI	ACTGGG	2 cut(s)	289, 346
BpmI	CTGGAG	1 cut(s)	55
BpuEI	CTTGAG	2 cut(s)	419, 447
BsaBI	GATNNNNATC	1 cut(s)	535
BsaI	GGTCTC	1 cut(s)	933
BsaJI	CCNNGG	3 cut(s)	100, 524, 576
BsaWI	WCCGGW	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	3 cut(s)	770, 848, 1127
Bse1I	ACTGG	7 cut(s)	284, 352, 381, 775, 963, 1083, 1132
Bse3DI	GCAATG	1 cut(s)	72
Bse8I	GATNNNNATC	1 cut(s)	535
BseAI	TCCGGA	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	3 cut(s)	100, 524, 576
BseGI	GGATG	5 cut(s)	82, 884, 888, 1035, 1087
BseJI	GATNNNNATC	1 cut(s)	535
BseLI	CCNNNNNNNGG	3 cut(s)	770, 848, 1127
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	3 cut(s)	152, 336, 645
BseNI	ACTGG	7 cut(s)	284, 352, 381, 775, 963, 1083, 1132
BseRI	GAGGAG	1 cut(s)	465
BseXI	GCAGC	1 cut(s)	610
BsgI	GTGCAG	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	423
BsiHKCI	CYCGRG	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	447
BslFI	GGGAC	1 cut(s)	411
BslI	CCNNNNNNNGG	3 cut(s)	770, 848, 1127
BsmAI	GTCTC	3 cut(s)	31, 363, 933
BsmFI	GGGAC	1 cut(s)	411
Bso31I	GGTCTC	1 cut(s)	933
BsoBI	CYCGRG	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp13I	TCCGGA	1 cut(s)	446
BspACI	CCGC	1 cut(s)	170
BspCNI	CTCAG	3 cut(s)	151, 335, 646
BspEI	TCCGGA	1 cut(s)	446
BspLI	GGNNCC	4 cut(s)	582, 1060, 1093, 1104
BspMAI	CTGCAG	1 cut(s)	673
BspPI	GGATC	9 cut(s)	449, 538, 575, 588, 755, 1086, 1099, 1112, 1150
BspQI	GCTCTTC	1 cut(s)	446
BspTNI	GGTCTC	1 cut(s)	933
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	7 cut(s)	284, 352, 381, 775, 963, 1083, 1132
BssECI	CCNNGG	3 cut(s)	100, 524, 576
BssT1I	CCWWGG	3 cut(s)	100, 524, 576
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	4 cut(s)	150, 827, 847, 1195
Bst6I	CTCTTC	1 cut(s)	446
BstC8I	GCNNGC	2 cut(s)	619, 904
BstDEI	CTNAG	3 cut(s)	138, 322, 654
BstF5I	GGATG	5 cut(s)	82, 884, 888, 1035, 1087
BstMAI	GTCTC	3 cut(s)	31, 363, 933
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 598, 627
BstNI	CCWGG	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	621
BstSCI	CCNGG	1 cut(s)	32
BstSFI	CTRYAG	2 cut(s)	669, 843
BstV1I	GCAGC	1 cut(s)	610
BstX2I	RGATCY	6 cut(s)	454, 536, 580, 661, 1091, 1155
BstXI	CCANNNNNNTGG	1 cut(s)	958
BstYI	RGATCY	6 cut(s)	454, 536, 580, 661, 1091, 1155
BtrI	CACGTC	1 cut(s)	132
BtsCI	GGATG	5 cut(s)	82, 884, 888, 1035, 1087
BtsIMutI	CAGTG	5 cut(s)	146, 852, 1076, 1125, 1191
Cac8I	GCNNGC	2 cut(s)	619, 904
CaiI	CAGNNNCTG	1 cut(s)	1193
Csp6I	GTAC	1 cut(s)	1131
CviAII	CATG	2 cut(s)	305, 618
CviQI	GTAC	1 cut(s)	1131
DdeI	CTNAG	3 cut(s)	138, 322, 654
DraI	TTTAAA	1 cut(s)	49
DraIII	CACNNNGTG	1 cut(s)	1016
Eam1104I	CTCTTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	446
Eco130I	CCWWGG	3 cut(s)	100, 524, 576
Eco31I	GGTCTC	1 cut(s)	933
Eco88I	CYCGRG	1 cut(s)	360
EcoRI	GAATTC	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	32
EcoT14I	CCWWGG	3 cut(s)	100, 524, 576
EcoT22I	ATGCAT	2 cut(s)	594, 1087
ErhI	CCWWGG	3 cut(s)	100, 524, 576
FaeI	CATG	2 cut(s)	308, 621
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	2 cut(s)	304, 617
FauNDI	CATATG	2 cut(s)	973, 988
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	2 cut(s)	599, 1188
FokI	GGATG	5 cut(s)	69, 891, 895, 1022, 1094
Fsp4HI	GCNGC	2 cut(s)	599, 1188
FspBI	CTAG	1 cut(s)	659
GluI	GCNGC	2 cut(s)	599, 1188
GsuI	CTGGAG	1 cut(s)	55
HapII	CCGG	1 cut(s)	447
Hin1II	CATG	2 cut(s)	308, 621
HindIII	AAGCTT	1 cut(s)	645
HinfI	GANTC	2 cut(s)	320, 519
HpaII	CCGG	1 cut(s)	447
HphI	GGTGA	3 cut(s)	237, 806, 1154
Hpy166II	GTNNAC	1 cut(s)	507
Hpy188I	TCNGA	4 cut(s)	129, 141, 237, 325
Hpy188III	TCNNGA	7 cut(s)	22, 362, 447, 464, 534, 1089, 1174
Hpy8I	GTNNAC	1 cut(s)	507
HpyAV	CCTTC	3 cut(s)	520, 1049, 1049
HpyCH4III	ACNGT	4 cut(s)	150, 827, 847, 1195
HpyCH4IV	ACGT	2 cut(s)	131, 1047
HpyCH4V	TGCA	9 cut(s)	291, 329, 374, 592, 598, 630, 671, 992, 1085
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 598, 627
HpyF3I	CTNAG	3 cut(s)	138, 322, 654
HpySE526I	ACGT	2 cut(s)	131, 1047
Hsp92II	CATG	2 cut(s)	308, 621
Kpn2I	TCCGGA	1 cut(s)	446
LguI	GCTCTTC	1 cut(s)	446
LmnI	GCTCC	1 cut(s)	1024
Lsp1109I	GCAGC	1 cut(s)	610
LweI	GCATC	4 cut(s)	316, 873, 1072, 1094
MaeI	CTAG	1 cut(s)	659
MaeII	ACGT	2 cut(s)	131, 1047
MaeIII	GTNAC	3 cut(s)	204, 1074, 1142
MboII	GAAGA	6 cut(s)	76, 120, 150, 433, 489, 1165
MflI	RGATCY	6 cut(s)	454, 536, 580, 661, 1091, 1155
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	9 cut(s)	90, 219, 239, 310, 550, 608, 798, 891, 996
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	2 cut(s)	324, 1002
Mph1103I	ATGCAT	2 cut(s)	594, 1087
MroI	TCCGGA	1 cut(s)	446
MseI	TTAA	3 cut(s)	48, 93, 720
MspI	CCGG	1 cut(s)	447
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	3 cut(s)	314, 598, 627
NdeI	CATATG	2 cut(s)	973, 988
NlaIII	CATG	2 cut(s)	308, 621
NlaIV	GGNNCC	4 cut(s)	582, 1060, 1093, 1104
NmuCI	GTSAC	2 cut(s)	1074, 1142
NsiI	ATGCAT	2 cut(s)	594, 1087
NspI	RCATGY	1 cut(s)	621
PaeI	GCATGC	1 cut(s)	621
PciSI	GCTCTTC	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	1000
PfeI	GAWTC	1 cut(s)	519
PflMI	CCANNNNNTGG	1 cut(s)	770
PkrI	GCNGC	2 cut(s)	600, 1189
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	4 cut(s)	582, 1060, 1093, 1104
PstI	CTGCAG	1 cut(s)	673
PstNI	CAGNNNCTG	1 cut(s)	1193
PsuI	RGATCY	6 cut(s)	454, 536, 580, 661, 1091, 1155
RsaI	GTAC	1 cut(s)	1132
RsaNI	GTAC	1 cut(s)	1131
SapI	GCTCTTC	1 cut(s)	446
SaqAI	TTAA	3 cut(s)	48, 93, 720
SatI	GCNGC	2 cut(s)	599, 1188
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	423
SfaNI	GCATC	4 cut(s)	316, 873, 1072, 1094
SfcI	CTRYAG	2 cut(s)	669, 843
SmlI	CTYRAG	2 cut(s)	434, 462
SmoI	CTYRAG	2 cut(s)	434, 462
SphI	GCATGC	1 cut(s)	621
Sse9I	AATT	9 cut(s)	90, 219, 239, 310, 550, 608, 798, 891, 996
SsiI	CCGC	1 cut(s)	170
SspI	AATATT	1 cut(s)	44
SspMI	CTAG	1 cut(s)	659
StyD4I	CCNGG	1 cut(s)	32
StyI	CCWWGG	3 cut(s)	100, 524, 576
TaaI	ACNGT	4 cut(s)	150, 827, 847, 1195
TaiI	ACGT	2 cut(s)	134, 1050
TaqI	TCGA	2 cut(s)	106, 898
TasI	AATT	9 cut(s)	90, 219, 239, 310, 550, 608, 798, 891, 996
TfiI	GAWTC	1 cut(s)	519
Tru1I	TTAA	3 cut(s)	48, 93, 720
Tru9I	TTAA	3 cut(s)	48, 93, 720
TscAI	CASTG	5 cut(s)	153, 852, 1083, 1132, 1198
TseFI	GTSAC	2 cut(s)	1074, 1142
TseI	GCWGC	2 cut(s)	598, 1187
Tsp45I	GTSAC	2 cut(s)	1074, 1142
TspDTI	ATGAA	4 cut(s)	293, 489, 801, 990
TspGWI	ACGGA	2 cut(s)	406, 484
TspRI	CASTG	5 cut(s)	153, 852, 1083, 1132, 1198
Van91I	CCANNNNNTGG	1 cut(s)	770
XapI	RAATTY	3 cut(s)	310, 550, 608
XceI	RCATGY	1 cut(s)	621
XmiI	GTMKAC	1 cut(s)	506
XspI	CTAG	1 cut(s)	659
Zsp2I	ATGCAT	2 cut(s)	594, 1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.