Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006188

Physical Location & Seq

Genomic Coordinates Forward (+)

50018292 .. 50022904

Gene Structure 4613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1399300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTCACTAGCATCTCTGACGTCGTGCTCTCAAACACTAGTCTACTACTCTTCCTCCAAGCCGCCGCCTTCTCCGCCTAAGCCTCCGCCTCCGCCTCACAGTTTCCTCCCACATGCCCACAATTCTCCATTAACTCCAAACACTTCAATTCCAGTTTCTACTCTCAAACTCTCTCCATATTCTTCAACATTGCTGACAAATGGGAACTGGGTTCCTCGCAGAAACAGATTTCTTCCAGCAAATTCAGCCGACTCCGACGCACAAAACGAATCGGCAACCGGCGAAAATGGCGGCAACCCATCAACCAGCTTTCTCTCTTTGCTTTGTCCCCTGCTCAAGCTCTTCTCCGGAGGAGATCCCTCTCAAGAACGGAACTTTACTTTGGAGGTAGCTACGTCTTCGTTGTCTACCTTGGCTAGATTCCCTTGGGGTTCAAGATCTCTGTCAAATAATATGGACAGCCAGGAGATCACTACCTTGGATCCTCCTTTGCGTTTGCAGCTTTTTGAATTTGAGGCTTGCCCTTTTTGCAGGAGGGTTAGAGAAGCTTTGACTGAGCTCGATCTTTCTGTAGAGGTATATCCTTGTCCAAAAGGTTCGGTAAGACATAGAGAAATGGTTAAAAGATTCGGTGGCAAAGAGCTGTTTCCTTTTCTCATTGATCCAAATACTGGTATTTCAATGTATGAAAGCGGTGAAATTGTGAAATACCTATTCCAGCAATATGGTAAAGGCAGAAAGCCTTCAGTGGGGCTTTTGGAAAGCACATTATTCACGGGATGGATGCCAACAATTCTGCGAGCAGGCAGAGGATTGACATTGTGGGAAAAGGCGAGCCCAGACCCACCACCCAAAATGCTGGAACTTTACTCATACGAAAACAATCCGTATGCACGAATTGTGCGCGAGGCACTTTGTGAATTGGAACTTCCTTACATCCTTCAAAACGTGGGAGAAGGGTCCCTGCGGTCGAAGTTGCTTGAGGCATCTGGATCCAAAGAGGTTCCTTACCTGATTGATCCTAACACCGGTACTCATGTCGGTGACTACAAGAAGATTCTGTCGTACTTGTTCCAGACATATTCAGCAGCCACTCTTGTACAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

GST_N_3

Protein Analysis

370

Amino Acids

40.84

Weight (kDa)

7.59

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	168 - 243	1.4e-19	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	173 - 238	2.1e-07	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	289 - 363	2.5e-09	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10000 AT4G10000
fragaria_vesca	FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030 FvH4_5g33030
malus_domestica	MD15G1399300.v1.1
prunus_persica	Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1 Prupe.1G546800_v2.0.a1
pyrus_communis	pycom15g35830
rosa_chinensis	RchiOBHm_Chr7g0231111
rosa_laevigata	RLG00000001433
rosa_multiflora	Rmu_co8504477.1_g000001 Rmu_sc0012403.1_g000013
rosa_roxburghii	Rroxscaffold_3G00229480 Rroxscaffold_3G00229550
rosa_rugosa	Rorug07G0264700.1
rosa_samantha	Rh7AG417500 Rh7BG393700 Rh7CG437500 Rh7DG411500
rosa_wichuraiana	Rw7G034570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1108
AatII	GACGTC	1 cut(s)	23
AccB7I	CCANNNNNTGG	1 cut(s)	671
AccI	GTMKAC	2 cut(s)	42, 407
AccII	CGCG	1 cut(s)	906
AccIII	TCCGGA	1 cut(s)	347
AciI	CCGC	8 cut(s)	62, 65, 74, 86, 92, 291, 693, 967
AclWI	GGATC	7 cut(s)	350, 476, 489, 656, 987, 1000, 1013
AcsI	RAATTY	2 cut(s)	241, 509
AcuI	CTGAAG	1 cut(s)	729
AcyI	GRCGYC	1 cut(s)	20
AdeI	CACNNNGTG	1 cut(s)	917
AfaI	GTAC	3 cut(s)	1033, 1067, 1101
AfiI	CCNNNNNNNGG	3 cut(s)	671, 749, 1028
AgeI	ACCGGT	1 cut(s)	1028
AgsI	TTSAA	6 cut(s)	147, 186, 435, 509, 681, 944
AhlI	ACTAGT	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	462
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	7 cut(s)	309, 340, 392, 502, 548, 559, 643
AluI	AGCT	7 cut(s)	309, 340, 392, 502, 548, 559, 643
Alw21I	GWGCWC	2 cut(s)	29, 561
AlwI	GGATC	7 cut(s)	350, 476, 489, 656, 987, 1000, 1013
Aor13HI	TCCGGA	1 cut(s)	347
ApeKI	GCWGC	2 cut(s)	499, 1088
ApoI	RAATTY	2 cut(s)	241, 509
AsiGI	ACCGGT	1 cut(s)	1028
Asp700I	GAANNNNTTC	1 cut(s)	742
AspLEI	GCGC	1 cut(s)	906
AspS9I	GGNCC	1 cut(s)	960
AsuHPI	GGTGA	2 cut(s)	707, 1055
AvaII	GGWCC	1 cut(s)	960
BaeI	ACNNNNGTAYC	2 cut(s)	1023, 1056
BamHI	GGATCC	2 cut(s)	481, 992
BanII	GRGCYC	2 cut(s)	561, 839
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	2 cut(s)	29, 561
BbvI	GCAGC	2 cut(s)	511, 1100
BccI	CCATC	2 cut(s)	307, 774
BciT130I	CCWGG	1 cut(s)	464
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	3 cut(s)	8, 38, 417
BfmI	CTRYAG	1 cut(s)	570
BglII	AGATCT	1 cut(s)	437
BisI	GCNGC	5 cut(s)	62, 65, 292, 500, 1089
BlsI	GCNGC	5 cut(s)	63, 66, 293, 501, 1090
Bme1390I	CCNGG	1 cut(s)	464
Bme18I	GGWCC	1 cut(s)	960
BmgT120I	GGNCC	1 cut(s)	960
BmiI	GGNNCC	6 cut(s)	213, 483, 961, 962, 994, 1005
BmrFI	CCNGG	1 cut(s)	464
BmrI	ACTGGG	1 cut(s)	217
BmsI	GCATC	3 cut(s)	20, 774, 995
BmuI	ACTGGG	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	3 cut(s)	320, 348, 1001
BsaHI	GRCGYC	1 cut(s)	20
BsaJI	CCNNGG	3 cut(s)	411, 425, 477
BsaWI	WCCGGW	2 cut(s)	347, 1028
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	3 cut(s)	671, 749, 1028
Bse118I	RCCGGY	2 cut(s)	278, 1028
Bse1I	ACTGG	3 cut(s)	152, 212, 676
Bse3DI	GCAATG	1 cut(s)	188
BseAI	TCCGGA	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	3 cut(s)	411, 425, 477
BseGI	GGATG	3 cut(s)	785, 789, 936
BseLI	CCNNNNNNNGG	3 cut(s)	671, 749, 1028
BseMI	GCAATG	1 cut(s)	188
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	3 cut(s)	152, 212, 676
BseRI	GAGGAG	1 cut(s)	366
BseXI	GCAGC	2 cut(s)	511, 1100
Bsh1236I	CGCG	1 cut(s)	906
Bsh1285I	CGRYCG	1 cut(s)	971
BshTI	ACCGGT	1 cut(s)	1028
BsiEI	CGRYCG	1 cut(s)	971
BsiHKAI	GWGCWC	2 cut(s)	29, 561
BsiSI	CCGG	3 cut(s)	279, 348, 1029
BslFI	GGGAC	2 cut(s)	312, 946
BslI	CCNNNNNNNGG	3 cut(s)	671, 749, 1028
BsmFI	GGGAC	2 cut(s)	312, 946
Bsp1286I	GDGCHC	3 cut(s)	29, 561, 839
Bsp13I	TCCGGA	1 cut(s)	347
Bsp1407I	TGTACA	1 cut(s)	1099
Bsp143I	GATC	8 cut(s)	355, 437, 468, 481, 562, 661, 992, 1018
BspACI	CCGC	8 cut(s)	62, 65, 74, 86, 92, 291, 693, 967
BspCNI	CTCAG	1 cut(s)	547
BspEI	TCCGGA	1 cut(s)	347
BspFNI	CGCG	1 cut(s)	906
BspLI	GGNNCC	6 cut(s)	213, 483, 961, 962, 994, 1005
BspPI	GGATC	7 cut(s)	350, 476, 489, 656, 987, 1000, 1013
BspQI	GCTCTTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	188
BsrFI	RCCGGY	2 cut(s)	278, 1028
BsrGI	TGTACA	1 cut(s)	1099
BsrI	ACTGG	3 cut(s)	152, 212, 676
BssAI	RCCGGY	2 cut(s)	278, 1028
BssECI	CCNNGG	3 cut(s)	411, 425, 477
BssMI	GATC	8 cut(s)	355, 437, 468, 481, 562, 661, 992, 1018
BssNI	GRCGYC	1 cut(s)	20
BssT1I	CCWWGG	3 cut(s)	411, 425, 477
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	2 cut(s)	101, 1104
Bst6I	CTCTTC	2 cut(s)	55, 347
BstACI	GRCGYC	1 cut(s)	20
BstAUI	TGTACA	1 cut(s)	1099
BstC8I	GCNNGC	4 cut(s)	520, 801, 805, 835
BstDEI	CTNAG	2 cut(s)	78, 555
BstF5I	GGATG	3 cut(s)	785, 789, 936
BstFNI	CGCG	1 cut(s)	906
BstHHI	GCGC	1 cut(s)	906
BstKTI	GATC	8 cut(s)	358, 440, 471, 484, 565, 664, 995, 1021
BstMBI	GATC	8 cut(s)	355, 437, 468, 481, 562, 661, 992, 1018
BstMCI	CGRYCG	1 cut(s)	971
BstMWI	GCNNNNNNNGC	5 cut(s)	73, 245, 288, 499, 528
BstNI	CCWGG	1 cut(s)	464
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	462
BstSFI	CTRYAG	1 cut(s)	570
BstUI	CGCG	1 cut(s)	906
BstV1I	GCAGC	2 cut(s)	511, 1100
BstV2I	GAAGAC	1 cut(s)	390
BstX2I	RGATCY	4 cut(s)	355, 437, 481, 992
BstXI	CCANNNNNNTGG	2 cut(s)	725, 859
BstYI	RGATCY	4 cut(s)	355, 437, 481, 992
BtsCI	GGATG	3 cut(s)	785, 789, 936
BtsIMutI	CAGTG	1 cut(s)	753
Cac8I	GCNNGC	4 cut(s)	520, 801, 805, 835
CfoI	GCGC	1 cut(s)	906
Cfr10I	RCCGGY	2 cut(s)	278, 1028
Cfr13I	GGNCC	1 cut(s)	960
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	3 cut(s)	1032, 1066, 1100
CspAI	ACCGGT	1 cut(s)	1028
CviAII	CATG	2 cut(s)	113, 1037
CviQI	GTAC	3 cut(s)	1032, 1066, 1100
DdeI	CTNAG	2 cut(s)	78, 555
DpnI	GATC	8 cut(s)	357, 439, 470, 483, 564, 663, 994, 1020
DpnII	GATC	8 cut(s)	355, 437, 468, 481, 562, 661, 992, 1018
DraIII	CACNNNGTG	1 cut(s)	917
Eam1104I	CTCTTC	2 cut(s)	55, 347
EarI	CTCTTC	2 cut(s)	55, 347
EciI	GGCGGA	3 cut(s)	63, 75, 81
Ecl136II	GAGCTC	1 cut(s)	559
Eco130I	CCWWGG	3 cut(s)	411, 425, 477
Eco24I	GRGCYC	2 cut(s)	561, 839
Eco47I	GGWCC	1 cut(s)	960
Eco53kI	GAGCTC	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	729
EcoICRI	GAGCTC	1 cut(s)	559
EcoO109I	RGGNCCY	1 cut(s)	960
EcoRII	CCWGG	1 cut(s)	462
EcoT14I	CCWWGG	3 cut(s)	411, 425, 477
EcoT38I	GRGCYC	2 cut(s)	561, 839
ErhI	CCWWGG	3 cut(s)	411, 425, 477
FaeI	CATG	2 cut(s)	116, 1040
FaqI	GGGAC	2 cut(s)	312, 946
FatI	CATG	2 cut(s)	112, 1036
FblI	GTMKAC	2 cut(s)	42, 407
Fnu4HI	GCNGC	5 cut(s)	62, 65, 292, 500, 1089
FokI	GGATG	3 cut(s)	792, 796, 923
FriOI	GRGCYC	2 cut(s)	561, 839
Fsp4HI	GCNGC	5 cut(s)	62, 65, 292, 500, 1089
FspBI	CTAG	3 cut(s)	8, 38, 417
GlaI	GCGC	1 cut(s)	905
GluI	GCNGC	5 cut(s)	62, 65, 292, 500, 1089
HapII	CCGG	3 cut(s)	279, 348, 1029
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	1 cut(s)	906
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	2 cut(s)	116, 1040
Hin6I	GCGC	1 cut(s)	904
HinP1I	GCGC	1 cut(s)	904
HindIII	AAGCTT	1 cut(s)	546
HinfI	GANTC	5 cut(s)	251, 269, 420, 627, 1057
HpaII	CCGG	3 cut(s)	279, 348, 1029
HphI	GGTGA	2 cut(s)	707, 1055
Hpy166II	GTNNAC	2 cut(s)	43, 408
Hpy188I	TCNGA	2 cut(s)	18, 256
Hpy188III	TCNNGA	5 cut(s)	348, 365, 435, 990, 1075
Hpy8I	GTNNAC	2 cut(s)	43, 408
Hpy99I	CGWCG	2 cut(s)	25, 260
HpyAV	CCTTC	4 cut(s)	78, 753, 950, 950
HpyCH4III	ACNGT	2 cut(s)	101, 1104
HpyCH4IV	ACGT	3 cut(s)	20, 395, 948
HpyCH4V	TGCA	3 cut(s)	499, 531, 893
HpyF10VI	GCNNNNNNNGC	5 cut(s)	73, 245, 288, 499, 528
HpyF3I	CTNAG	2 cut(s)	78, 555
HpySE526I	ACGT	3 cut(s)	20, 395, 948
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	2 cut(s)	116, 1040
HspAI	GCGC	1 cut(s)	904
KflI	GGGWCCC	1 cut(s)	960
Kpn2I	TCCGGA	1 cut(s)	347
Kzo9I	GATC	8 cut(s)	355, 437, 468, 481, 562, 661, 992, 1018
LguI	GCTCTTC	1 cut(s)	347
Lsp1109I	GCAGC	2 cut(s)	511, 1100
LweI	GCATC	3 cut(s)	20, 774, 995
MaeI	CTAG	3 cut(s)	8, 38, 417
MaeII	ACGT	3 cut(s)	20, 395, 948
MaeIII	GTNAC	2 cut(s)	3, 1043
MalI	GATC	8 cut(s)	357, 439, 470, 483, 564, 663, 994, 1020
MboI	GATC	8 cut(s)	355, 437, 468, 481, 562, 661, 992, 1018
MboII	GAAGA	6 cut(s)	42, 174, 224, 334, 390, 1066
MflI	RGATCY	4 cut(s)	355, 437, 481, 992
MhlI	GDGCHC	3 cut(s)	29, 561, 839
MluCI	AATT	8 cut(s)	121, 147, 241, 509, 699, 792, 897, 920
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	279
MroI	TCCGGA	1 cut(s)	347
MroXI	GAANNNNTTC	1 cut(s)	742
MseI	TTAA	2 cut(s)	131, 621
MslI	CAYNNNNRTG	1 cut(s)	1041
MspI	CCGG	3 cut(s)	279, 348, 1029
MspR9I	CCNGG	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	464
MvnI	CGCG	1 cut(s)	906
MwoI	GCNNNNNNNGC	5 cut(s)	73, 245, 288, 499, 528
NdeII	GATC	8 cut(s)	355, 437, 468, 481, 562, 661, 992, 1018
NlaIII	CATG	2 cut(s)	116, 1040
NlaIV	GGNNCC	6 cut(s)	213, 483, 961, 962, 994, 1005
NmuCI	GTSAC	2 cut(s)	3, 1043
NspI	RCATGY	1 cut(s)	116
PciSI	GCTCTTC	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	742
PfeI	GAWTC	4 cut(s)	269, 420, 627, 1057
PflMI	CCANNNNNTGG	1 cut(s)	671
PinAI	ACCGGT	1 cut(s)	1028
PkrI	GCNGC	5 cut(s)	63, 66, 293, 501, 1090
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PpuMI	RGGWCCY	1 cut(s)	960
PsiI	TTATAA	1 cut(s)	1108
Psp124BI	GAGCTC	1 cut(s)	561
Psp5II	RGGWCCY	1 cut(s)	960
Psp6I	CCWGG	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	6 cut(s)	213, 483, 961, 962, 994, 1005
PspPI	GGNCC	1 cut(s)	960
PspPPI	RGGWCCY	1 cut(s)	960
PsuI	RGATCY	4 cut(s)	355, 437, 481, 992
RsaI	GTAC	3 cut(s)	1033, 1067, 1101
RsaNI	GTAC	3 cut(s)	1032, 1066, 1100
RseI	CAYNNNNRTG	1 cut(s)	1041
SacI	GAGCTC	1 cut(s)	561
SapI	GCTCTTC	1 cut(s)	347
SaqAI	TTAA	2 cut(s)	131, 621
SatI	GCNGC	5 cut(s)	62, 65, 292, 500, 1089
Sau3AI	GATC	8 cut(s)	355, 437, 468, 481, 562, 661, 992, 1018
Sau96I	GGNCC	1 cut(s)	960
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	464
SduI	GDGCHC	3 cut(s)	29, 561, 839
SfaNI	GCATC	3 cut(s)	20, 774, 995
SfcI	CTRYAG	1 cut(s)	570
SinI	GGWCC	1 cut(s)	960
SmiMI	CAYNNNNRTG	1 cut(s)	1041
SmlI	CTYRAG	3 cut(s)	335, 363, 980
SmoI	CTYRAG	3 cut(s)	335, 363, 980
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	8 cut(s)	121, 147, 241, 509, 699, 792, 897, 920
SsiI	CCGC	8 cut(s)	62, 65, 74, 86, 92, 291, 693, 967
SspMI	CTAG	3 cut(s)	8, 38, 417
SstI	GAGCTC	1 cut(s)	561
StyD4I	CCNGG	1 cut(s)	462
StyI	CCWWGG	3 cut(s)	411, 425, 477
TaaI	ACNGT	2 cut(s)	101, 1104
TaiI	ACGT	3 cut(s)	23, 398, 951
TaqI	TCGA	2 cut(s)	561, 971
TasI	AATT	8 cut(s)	121, 147, 241, 509, 699, 792, 897, 920
TatI	WGTACW	1 cut(s)	1099
TauI	GCSGC	3 cut(s)	64, 67, 294
TfiI	GAWTC	4 cut(s)	269, 420, 627, 1057
Tru1I	TTAA	2 cut(s)	131, 621
Tru9I	TTAA	2 cut(s)	131, 621
TscAI	CASTG	1 cut(s)	753
TseFI	GTSAC	2 cut(s)	3, 1043
TseI	GCWGC	2 cut(s)	499, 1088
Tsp45I	GTSAC	2 cut(s)	3, 1043
TspDTI	ATGAA	1 cut(s)	702
TspGWI	ACGGA	2 cut(s)	385, 876
TspRI	CASTG	1 cut(s)	753
Van91I	CCANNNNNTGG	1 cut(s)	671
VpaK11BI	GGWCC	1 cut(s)	960
XapI	RAATTY	2 cut(s)	241, 509
XceI	RCATGY	1 cut(s)	116
XmiI	GTMKAC	2 cut(s)	42, 407
XmnI	GAANNNNTTC	1 cut(s)	742
XspI	CTAG	3 cut(s)	8, 38, 417
ZraI	GACGTC	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.