Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006485

Physical Location & Seq

Genomic Coordinates Reverse (-)

27815124 .. 27818172

Gene Structure 3049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g37780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGACCAACCAAAATGTACTTGTTTCCGATGTCAAAGGCGTGGCTATGGCTGTCGCTGCCATGAAGAACCAGTCTATGTTCTCTTCATCGGTGGCGAGTTCCATGATTGAATCAGGAGGAGTTGCAGGGTGTATTTTCACCATTCCCAGGAGTATTAAGCTCTTGAAGGTTGAGACTGCTGAAGTTGGTGGTGGAGCTGCCCGAGTCAATGCTTGGGTGGACTCATTGAGAGCTTCTTCTCCGCCGCGTGTTAAATCCACCACCACTTCCCCCTCCACTCTTTCTCAAACTGGGGATGAAGAAAACTCTTGGAATCTTCGTCACCCATCAGCTATAAACATGTTTGAGGAGATTACAAATGCTTCAAAGGGGAAGCAGATTGTCATGTTTCTTGATTACGATGGAACCCTTTCTCCAATTGTTCAAGACCCTGACAGAGCCTTCATGTCCAATGAGATGAGAAAAGCTGTGAGGGCAGTTGCTAGATATTTTCCAACAGCCATAGTTAGTGGGAGGTGCCGCGACAAGGTTTATAGCTTTGTCAAACTAGCAGAGCTTTACTATGCAGGAAGCCATGGGATGGACATCAAAGGACCATCCAAAAGTAACAAGTACAAGAATGCTAATCAACAAGCAGTTCTGTGCCAACCAGCTAGTGAATTTGTACCCATGATTGATGAGGTCTTCAAAATTTTAGTGGAGAAAACCAAATCCATCTCAGGAGCTAGGGTGGAAAATAATAAGTTCTGTTTATCTGTACACTTTCGTTGTGTTGAGGAGAAGAGTTGGGCTGCTCTGGCAGAGCAAGTAAGCTTAGTGCTCAATGAGTACCCAAAGCTGAAGTTGACTCAAGGGAGAAAGGTCTTGGAGATTAGGCCAACCATCAAATGGGACAAGGGCAAAGCACTTGAATTCTTGCTAGAGTCATTAGGATACGCCAACTCAAATGAAGTATTACCGGTCTATATTGGAGATGATAGAACAGATGAGGATGCTTTCAAGCTTTTACGTGATAGAGGACAAGGATTTGGAATTCTTGTTTCTAAAGTTCCAAAAGAAACAAATGCTTCTTATTCCTTGCAAGAACCAGCAGAGGTCAAGGACTTTTTGCGACGTCTAGTGAAGTGGAAAAGATTGACGCTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004805 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0015927 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016798 GO:0019203 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

383

Amino Acids

42.35

Weight (kDa)

9.22

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	130 - 363	3.7e-72	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35910
fragaria_vesca	FvH4_3g04100 FvH4_3g04100 FvH4_3g04100 FvH4_3g04100 FvH4_5g37780 FvH4_5g37780 FvH4_5g37780 FvH4_5g37780
malus_domestica	MD08G1180400.v1.1 MD15G1365900.v1.1
prunus_persica	Prupe.1G513800_v2.0.a1
pyrus_communis	pycom08g15440 pycom15g32820
rosa_chinensis	RchiOBHm_Chr7g0239531
rosa_laevigata	RLG00000000747
rosa_multiflora	Rmu_sc0003379.1_g000024
rosa_roxburghii	Rroxscaffold_3G00220860
rosa_rugosa	Rorug07G0328400 Rorug07G0328400
rosa_samantha	Rh7AG482300 Rh7BG286700 Rh7BG455100 Rh7CG500000 Rh7DG468200
rosa_wichuraiana	Rw7G040390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1117
AccB1I	GGYRCC	1 cut(s)	516
AccB7I	CCANNNNNTGG	2 cut(s)	580, 888
AccII	CGCG	2 cut(s)	247, 522
AciI	CCGC	3 cut(s)	242, 245, 520
AcsI	RAATTY	4 cut(s)	659, 690, 911, 1032
AcuI	CTGAAG	2 cut(s)	201, 860
AcyI	GRCGYC	1 cut(s)	1114
AfaI	GTAC	5 cut(s)	18, 614, 666, 759, 830
AfiI	CCNNNNNNNGG	4 cut(s)	147, 526, 580, 888
AflIII	ACRYGT	1 cut(s)	339
AgeI	ACCGGT	1 cut(s)	958
AgsI	TTSAA	7 cut(s)	110, 166, 366, 425, 688, 911, 1000
AjnI	CCWGG	1 cut(s)	146
AloI	GAACNNNNNNTCC	2 cut(s)	397, 429
Alw21I	GWGCWC	1 cut(s)	822
Alw26I	GTCTC	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	1 cut(s)	875
ApeKI	GCWGC	4 cut(s)	56, 197, 791, 1141
ApoI	RAATTY	4 cut(s)	659, 690, 911, 1032
AsiGI	ACCGGT	1 cut(s)	958
Asp700I	GAANNNNTTC	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	593
AsuHPI	GGTGA	2 cut(s)	130, 314
AvaI	CYCGRG	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	593
BanI	GGYRCC	1 cut(s)	516
BbsI	GAAGAC	1 cut(s)	676
Bbv12I	GWGCWC	1 cut(s)	822
BbvI	GCAGC	4 cut(s)	43, 184, 778, 1128
BccI	CCATC	6 cut(s)	334, 395, 574, 604, 722, 890
BciT130I	CCWGG	1 cut(s)	148
BciVI	GTATCC	1 cut(s)	926
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	6 cut(s)	483, 548, 654, 726, 920, 1118
BfmI	CTRYAG	1 cut(s)	1142
BfuI	GTATCC	1 cut(s)	926
BisI	GCNGC	6 cut(s)	57, 198, 245, 520, 792, 1142
BlsI	GCNGC	6 cut(s)	58, 199, 246, 521, 793, 1143
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	593
BmeT110I	CYCGRG	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	593
BmiI	GGNNCC	2 cut(s)	406, 518
BmrFI	CCNGG	1 cut(s)	148
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	982
BmuI	ACTGGG	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	676
BpuEI	CTTGAG	1 cut(s)	834
BsaAI	YACGTR	1 cut(s)	1010
BsaBI	GATNNNNATC	1 cut(s)	584
BsaHI	GRCGYC	1 cut(s)	1114
BsaJI	CCNNGG	2 cut(s)	146, 574
BsaWI	WCCGGW	1 cut(s)	958
BsaXI	ACNNNNNCTCC	4 cut(s)	397, 427, 714, 744
Bsc4I	CCNNNNNNNGG	4 cut(s)	147, 526, 580, 888
Bse118I	RCCGGY	1 cut(s)	958
Bse1I	ACTGG	2 cut(s)	70, 295
Bse8I	GATNNNNATC	1 cut(s)	584
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	146, 574
BseGI	GGATG	4 cut(s)	301, 585, 596, 997
BseJI	GATNNNNATC	1 cut(s)	584
BseLI	CCNNNNNNNGG	4 cut(s)	147, 526, 580, 888
BseMII	CTCAG	1 cut(s)	732
BseNI	ACTGG	2 cut(s)	70, 295
BseRI	GAGGAG	3 cut(s)	132, 362, 791
BseXI	GCAGC	4 cut(s)	43, 184, 778, 1128
Bsh1236I	CGCG	2 cut(s)	247, 522
BshFI	GGCC	1 cut(s)	877
BshNI	GGYRCC	1 cut(s)	516
BshTI	ACCGGT	1 cut(s)	958
BsiHKAI	GWGCWC	1 cut(s)	822
BsiHKCI	CYCGRG	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	959
BslFI	GGGAC	1 cut(s)	905
BslI	CCNNNNNNNGG	4 cut(s)	147, 526, 580, 888
BsmAI	GTCTC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	905
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	1 cut(s)	877
BsoBI	CYCGRG	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	822
Bsp1407I	TGTACA	1 cut(s)	757
Bsp19I	CCATGG	1 cut(s)	574
BspACI	CCGC	3 cut(s)	242, 245, 520
BspANI	GGCC	1 cut(s)	877
BspCNI	CTCAG	1 cut(s)	731
BspFNI	CGCG	2 cut(s)	247, 522
BspLI	GGNNCC	2 cut(s)	406, 518
BspMAI	CTGCAG	1 cut(s)	1146
BspT107I	GGYRCC	1 cut(s)	516
BsrFI	RCCGGY	1 cut(s)	958
BsrGI	TGTACA	1 cut(s)	757
BsrI	ACTGG	2 cut(s)	70, 295
BssAI	RCCGGY	1 cut(s)	958
BssECI	CCNNGG	2 cut(s)	146, 574
BssNI	GRCGYC	1 cut(s)	1114
BssT1I	CCWWGG	1 cut(s)	574
Bst2UI	CCWGG	1 cut(s)	148
Bst6I	CTCTTC	2 cut(s)	88, 776
BstACI	GRCGYC	1 cut(s)	1114
BstAUI	TGTACA	1 cut(s)	757
BstBAI	YACGTR	1 cut(s)	1010
BstDEI	CTNAG	2 cut(s)	718, 814
BstDSI	CCRYGG	1 cut(s)	574
BstF5I	GGATG	4 cut(s)	301, 585, 596, 997
BstFNI	CGCG	2 cut(s)	247, 522
BstMAI	GTCTC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 473, 797
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	146
BstSFI	CTRYAG	1 cut(s)	1142
BstUI	CGCG	2 cut(s)	247, 522
BstV1I	GCAGC	4 cut(s)	43, 184, 778, 1128
BstV2I	GAAGAC	1 cut(s)	676
BsuI	GTATCC	1 cut(s)	926
BsuRI	GGCC	1 cut(s)	877
BtgI	CCRYGG	1 cut(s)	574
BtsCI	GGATG	4 cut(s)	301, 585, 596, 997
Cfr10I	RCCGGY	1 cut(s)	958
Cfr13I	GGNCC	1 cut(s)	593
Csp6I	GTAC	5 cut(s)	17, 613, 665, 758, 829
CspAI	ACCGGT	1 cut(s)	958
CviAII	CATG	7 cut(s)	61, 103, 340, 385, 445, 575, 670
CviQI	GTAC	5 cut(s)	17, 613, 665, 758, 829
DdeI	CTNAG	2 cut(s)	718, 814
Eam1104I	CTCTTC	2 cut(s)	88, 776
EarI	CTCTTC	2 cut(s)	88, 776
EciI	GGCGGA	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	593
Eco57I	CTGAAG	2 cut(s)	201, 860
Eco88I	CYCGRG	1 cut(s)	201
EcoRI	GAATTC	2 cut(s)	911, 1032
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	574
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	7 cut(s)	64, 106, 343, 388, 448, 578, 673
FaqI	GGGAC	1 cut(s)	905
FatI	CATG	7 cut(s)	60, 102, 339, 384, 444, 574, 669
Fnu4HI	GCNGC	6 cut(s)	57, 198, 245, 520, 792, 1142
FokI	GGATG	4 cut(s)	308, 583, 592, 1004
Fsp4HI	GCNGC	6 cut(s)	57, 198, 245, 520, 792, 1142
FspBI	CTAG	6 cut(s)	483, 548, 654, 726, 920, 1118
GluI	GCNGC	6 cut(s)	57, 198, 245, 520, 792, 1142
HaeIII	GGCC	1 cut(s)	877
HapII	CCGG	1 cut(s)	959
Hin1I	GRCGYC	1 cut(s)	1114
Hin1II	CATG	7 cut(s)	64, 106, 343, 388, 448, 578, 673
HincII	GTYRAC	1 cut(s)	846
HindII	GTYRAC	1 cut(s)	846
HindIII	AAGCTT	2 cut(s)	811, 1001
HinfI	GANTC	6 cut(s)	110, 204, 221, 313, 847, 923
HpaII	CCGG	1 cut(s)	959
HphI	GGTGA	2 cut(s)	130, 314
Hpy166II	GTNNAC	3 cut(s)	220, 760, 846
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	5 cut(s)	114, 163, 392, 425, 720
Hpy8I	GTNNAC	3 cut(s)	220, 760, 846
Hpy99I	CGWCG	1 cut(s)	1116
HpyAV	CCTTC	2 cut(s)	160, 451
HpyCH4IV	ACGT	2 cut(s)	1009, 1114
HpyCH4V	TGCA	4 cut(s)	125, 566, 1081, 1144
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 473, 797
HpyF3I	CTNAG	2 cut(s)	718, 814
HpySE526I	ACGT	2 cut(s)	1009, 1114
Hsp92I	GRCGYC	1 cut(s)	1114
Hsp92II	CATG	7 cut(s)	64, 106, 343, 388, 448, 578, 673
LmnI	GCTCC	2 cut(s)	194, 722
Lsp1109I	GCAGC	4 cut(s)	43, 184, 778, 1128
LweI	GCATC	1 cut(s)	982
MaeI	CTAG	6 cut(s)	483, 548, 654, 726, 920, 1118
MaeII	ACGT	2 cut(s)	1009, 1114
MaeIII	GTNAC	2 cut(s)	320, 605
MboII	GAAGA	7 cut(s)	75, 76, 228, 308, 311, 676, 793
MfeI	CAATTG	1 cut(s)	417
MhlI	GDGCHC	1 cut(s)	822
MluCI	AATT	5 cut(s)	417, 659, 690, 911, 1032
MlyI	GAGTC	4 cut(s)	213, 215, 841, 932
MmeI	TCCRAC	1 cut(s)	518
MroXI	GAANNNNTTC	1 cut(s)	409
MseI	TTAA	2 cut(s)	156, 252
MspI	CCGG	1 cut(s)	959
MspR9I	CCNGG	1 cut(s)	148
MunI	CAATTG	1 cut(s)	417
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	1 cut(s)	148
MvnI	CGCG	2 cut(s)	247, 522
MwoI	GCNNNNNNNGC	3 cut(s)	56, 473, 797
NcoI	CCATGG	1 cut(s)	574
NlaIII	CATG	7 cut(s)	64, 106, 343, 388, 448, 578, 673
NlaIV	GGNNCC	2 cut(s)	406, 518
NmuCI	GTSAC	1 cut(s)	320
NspI	RCATGY	1 cut(s)	343
PciI	ACATGT	1 cut(s)	339
PctI	GAATGC	1 cut(s)	625
PdmI	GAANNNNTTC	1 cut(s)	409
PfeI	GAWTC	2 cut(s)	110, 313
PflMI	CCANNNNNTGG	2 cut(s)	580, 888
PinAI	ACCGGT	1 cut(s)	958
PkrI	GCNGC	6 cut(s)	58, 199, 246, 521, 793, 1143
PleI	GAGTC	4 cut(s)	212, 215, 841, 931
PpsI	GAGTC	4 cut(s)	212, 215, 841, 931
Ppu21I	YACGTR	1 cut(s)	1010
PscI	ACATGT	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	406, 518
PspPI	GGNCC	1 cut(s)	593
PstI	CTGCAG	1 cut(s)	1146
RsaI	GTAC	5 cut(s)	18, 614, 666, 759, 830
RsaNI	GTAC	5 cut(s)	17, 613, 665, 758, 829
SaqAI	TTAA	2 cut(s)	156, 252
SatI	GCNGC	6 cut(s)	57, 198, 245, 520, 792, 1142
Sau96I	GGNCC	1 cut(s)	593
SchI	GAGTC	4 cut(s)	213, 215, 841, 932
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	822
SfaNI	GCATC	1 cut(s)	982
SfcI	CTRYAG	1 cut(s)	1142
SinI	GGWCC	1 cut(s)	593
SmlI	CTYRAG	1 cut(s)	849
SmoI	CTYRAG	1 cut(s)	849
Sse9I	AATT	5 cut(s)	417, 659, 690, 911, 1032
SsiI	CCGC	3 cut(s)	242, 245, 520
SspMI	CTAG	6 cut(s)	483, 548, 654, 726, 920, 1118
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	574
TaiI	ACGT	2 cut(s)	1012, 1117
TasI	AATT	5 cut(s)	417, 659, 690, 911, 1032
TatI	WGTACW	3 cut(s)	16, 612, 757
TauI	GCSGC	2 cut(s)	247, 522
TfiI	GAWTC	2 cut(s)	110, 313
Tru1I	TTAA	2 cut(s)	156, 252
Tru9I	TTAA	2 cut(s)	156, 252
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	4 cut(s)	56, 197, 791, 1141
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	5 cut(s)	75, 77, 312, 433, 963
Van91I	CCANNNNNTGG	2 cut(s)	580, 888
VpaK11BI	GGWCC	1 cut(s)	593
XapI	RAATTY	4 cut(s)	659, 690, 911, 1032
XceI	RCATGY	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	885
XmnI	GAANNNNTTC	1 cut(s)	409
XspI	CTAG	6 cut(s)	483, 548, 654, 726, 920, 1118
ZraI	GACGTC	1 cut(s)	1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.