Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006485

Physical Location & Seq

Genomic Coordinates Forward (+)

15099709 .. 15102076

Gene Structure 2368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15440.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGACCAACCAAAATGTGCTTGTTTCTGATGCCAAAGGCGTGGCTATTAAAGTCACGGTTGCTAAAAAGGCTATGTTTTCACAGTCGGTTCCGAAACCGATGACTGAGGGAGGAGGAGGAGGGTGCTTCACCATTCCCATGAACATCAAGGTTTTGAAAGTTGACACAGAAGGCGGAGCAGCCAGAGTCAATGCTTGGGTTGACTCCTTGAGAGCATCTTCTCCAACTCGTGTCAAATCAGCCACTCCTCAGTCTCTTTCTGAAACCGTGGATTATAACTCTTGGACTGTTTTGAATTACTATGGTAATTTTGGTCAGATGAGAAAAGCAGTGAGGGCCGCTGCTAGATACTTTCCCACGGCAATAGTTAGCGGGAGGTGCAGAGACAAGGTTTATAGCTTTGTAAAATTAGGAGAGCTTTATTATGCAGGCAGCCATGGGATGGACATCAGGGGGCCATCCAAAAGTAGCAAATATAAGAATGATAATCAAGCGGTTCTCTTCCAACCAGCCAGTGAGTTTGTACCAATGATTGATGAGGTGTACAAAACTTTATTGGAGAAAACTAGATCCATCTCAGGAGCTAGGGTGGAAAATAATAAATTTTGCTTATCTGTACACTTCCGTTGTGTTGATGAGAAGAGTTGGGCAGCTTTAGCAGAGCAAGTTAGACTTGTTCTCAATGAGTACCCAAAGCTCAGATTGACTCAAGGGAGGAAGTGGTCTATTGGTTTTAAACAGGTATTAGAGATCAGGCCAACAATCAAATGGGACAAAGGCAAAGCTCTTGAATTCTTGCTAGAGTCATTAGGATATGCGAACTCAAATGAAGTATTCCCAGTCTATATTGGAGATGATCGAACAGACGAGGATGCCTTCAAGGTGCTACGCGACAGAGGACAAGGATTTGGTATTCTAGTTTCTAAAGTTCCAAAAGAAACAAATGCTTCTTATACTTTGCAAGAACCAGCAGAGGTTAAGGACTTTTTGTTGCGTTTGGTGAAATGGAAGAGATTGTCGAACCAACAAAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004805 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0015927 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016798 GO:0019203 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

346

Amino Acids

38.69

Weight (kDa)

9.62

Isoelectric Point (pI)

24.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35910
fragaria_vesca	FvH4_3g04100 FvH4_3g04100 FvH4_3g04100 FvH4_3g04100 FvH4_5g37780 FvH4_5g37780 FvH4_5g37780 FvH4_5g37780
malus_domestica	MD08G1180400.v1.1 MD15G1365900.v1.1
prunus_persica	Prupe.1G513800_v2.0.a1
pyrus_communis	pycom08g15440 pycom15g32820
rosa_chinensis	RchiOBHm_Chr7g0239531
rosa_laevigata	RLG00000000747
rosa_multiflora	Rmu_sc0003379.1_g000024
rosa_roxburghii	Rroxscaffold_3G00220860
rosa_rugosa	Rorug07G0328400 Rorug07G0328400
rosa_samantha	Rh7AG482300 Rh7BG286700 Rh7BG455100 Rh7CG500000 Rh7DG468200
rosa_wichuraiana	Rw7G040390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	276
AccB7I	CCANNNNNTGG	1 cut(s)	442
AccII	CGCG	1 cut(s)	891
AciI	CCGC	4 cut(s)	174, 339, 372, 494
AclWI	GGATC	1 cut(s)	564
AcsI	RAATTY	2 cut(s)	602, 791
AfaI	GTAC	4 cut(s)	525, 545, 618, 689
AfiI	CCNNNNNNNGG	1 cut(s)	442
AgsI	TTSAA	4 cut(s)	157, 295, 791, 880
AluBI	AGCT	6 cut(s)	399, 418, 584, 653, 697, 785
AluI	AGCT	6 cut(s)	399, 418, 584, 653, 697, 785
Alw26I	GTCTC	2 cut(s)	258, 378
AlwI	GGATC	1 cut(s)	564
AoxI	GGCC	3 cut(s)	336, 455, 755
ApeKI	GCWGC	4 cut(s)	179, 341, 432, 650
ApoI	RAATTY	2 cut(s)	602, 791
AspS9I	GGNCC	2 cut(s)	336, 455
AsuHPI	GGTGA	2 cut(s)	121, 1012
BauI	CACGAG	1 cut(s)	228
BbvI	GCAGC	4 cut(s)	191, 328, 444, 662
BccI	CCATC	3 cut(s)	436, 466, 581
BceAI	ACGGC	1 cut(s)	375
BcoDI	GTCTC	2 cut(s)	258, 378
BfaI	CTAG	6 cut(s)	345, 567, 585, 800, 917, 1036
BisI	GCNGC	5 cut(s)	180, 339, 342, 433, 651
BlsI	GCNGC	5 cut(s)	181, 340, 343, 434, 652
BmgT120I	GGNCC	2 cut(s)	336, 455
BmiI	GGNNCC	2 cut(s)	90, 456
BmrI	ACTGGG	1 cut(s)	833
BmsI	GCATC	3 cut(s)	19, 224, 862
BmuI	ACTGGG	1 cut(s)	833
BpuEI	CTTGAG	2 cut(s)	229, 693
BsaBI	GATNNNNATC	1 cut(s)	446
BsaJI	CCNNGG	3 cut(s)	267, 357, 436
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse1I	ACTGG	2 cut(s)	513, 839
Bse8I	GATNNNNATC	1 cut(s)	446
BseDI	CCNNGG	3 cut(s)	267, 357, 436
BseGI	GGATG	3 cut(s)	447, 458, 877
BseJI	GATNNNNATC	1 cut(s)	446
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMII	CTCAG	4 cut(s)	96, 263, 591, 712
BseNI	ACTGG	2 cut(s)	513, 839
BseRI	GAGGAG	4 cut(s)	126, 129, 132, 237
BseXI	GCAGC	4 cut(s)	191, 328, 444, 662
BsgI	GTGCAG	1 cut(s)	400
Bsh1236I	CGCG	1 cut(s)	891
BshFI	GGCC	3 cut(s)	338, 457, 757
BslFI	GGGAC	1 cut(s)	785
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	2 cut(s)	258, 378
BsmFI	GGGAC	1 cut(s)	785
BsnI	GGCC	3 cut(s)	338, 457, 757
Bsp1407I	TGTACA	2 cut(s)	543, 616
Bsp143I	GATC	3 cut(s)	569, 750, 856
Bsp19I	CCATGG	1 cut(s)	436
BspACI	CCGC	4 cut(s)	174, 339, 372, 494
BspANI	GGCC	3 cut(s)	338, 457, 757
BspCNI	CTCAG	4 cut(s)	97, 262, 590, 711
BspFNI	CGCG	1 cut(s)	891
BspLI	GGNNCC	2 cut(s)	90, 456
BspPI	GGATC	1 cut(s)	564
BsrGI	TGTACA	2 cut(s)	543, 616
BsrI	ACTGG	2 cut(s)	513, 839
BssECI	CCNNGG	3 cut(s)	267, 357, 436
BssMI	GATC	3 cut(s)	569, 750, 856
BssSI	CACGAG	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	436
Bst2BI	CACGAG	1 cut(s)	228
Bst4CI	ACNGT	4 cut(s)	58, 84, 268, 289
Bst6I	CTCTTC	3 cut(s)	506, 635, 1004
BstAUI	TGTACA	2 cut(s)	543, 616
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	4 cut(s)	105, 249, 577, 698
BstDSI	CCRYGG	3 cut(s)	267, 357, 436
BstF5I	GGATG	3 cut(s)	447, 458, 877
BstFNI	CGCG	1 cut(s)	891
BstKTI	GATC	3 cut(s)	572, 753, 859
BstMAI	GTCTC	2 cut(s)	258, 378
BstMBI	GATC	3 cut(s)	569, 750, 856
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 335, 378, 656
BstUI	CGCG	1 cut(s)	891
BstV1I	GCAGC	4 cut(s)	191, 328, 444, 662
BstX2I	RGATCY	1 cut(s)	569
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	569
BsuRI	GGCC	3 cut(s)	338, 457, 757
BtgI	CCRYGG	3 cut(s)	267, 357, 436
BtsCI	GGATG	3 cut(s)	447, 458, 877
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	2 cut(s)	336, 520
Cac8I	GCNNGC	1 cut(s)	430
Cfr13I	GGNCC	2 cut(s)	336, 455
Csp6I	GTAC	4 cut(s)	524, 544, 617, 688
CviAII	CATG	2 cut(s)	139, 437
CviQI	GTAC	4 cut(s)	524, 544, 617, 688
DdeI	CTNAG	4 cut(s)	105, 249, 577, 698
DpnI	GATC	3 cut(s)	571, 752, 858
DpnII	GATC	3 cut(s)	569, 750, 856
DraI	TTTAAA	1 cut(s)	736
Eam1104I	CTCTTC	3 cut(s)	506, 635, 1004
EarI	CTCTTC	3 cut(s)	506, 635, 1004
EciI	GGCGGA	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	436
EcoRI	GAATTC	1 cut(s)	791
EcoT14I	CCWWGG	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	2 cut(s)	142, 440
FalI	AAGNNNNNCTT	2 cut(s)	657, 689
FaqI	GGGAC	1 cut(s)	785
FatI	CATG	2 cut(s)	138, 436
FauI	CCCGC	1 cut(s)	365
Fnu4HI	GCNGC	5 cut(s)	180, 339, 342, 433, 651
FokI	GGATG	3 cut(s)	445, 454, 884
Fsp4HI	GCNGC	5 cut(s)	180, 339, 342, 433, 651
FspBI	CTAG	6 cut(s)	345, 567, 585, 800, 917, 1036
GluI	GCNGC	5 cut(s)	180, 339, 342, 433, 651
HaeIII	GGCC	3 cut(s)	338, 457, 757
Hin1II	CATG	2 cut(s)	142, 440
HincII	GTYRAC	2 cut(s)	163, 202
HindII	GTYRAC	2 cut(s)	163, 202
HinfI	GANTC	4 cut(s)	186, 203, 706, 803
HphI	GGTGA	2 cut(s)	121, 1012
Hpy166II	GTNNAC	4 cut(s)	163, 202, 544, 619
Hpy188I	TCNGA	5 cut(s)	28, 93, 262, 318, 701
Hpy188III	TCNNGA	2 cut(s)	579, 788
Hpy8I	GTNNAC	4 cut(s)	163, 202, 544, 619
HpyAV	CCTTC	2 cut(s)	164, 886
HpyCH4III	ACNGT	4 cut(s)	58, 84, 268, 289
HpyCH4V	TGCA	3 cut(s)	381, 428, 961
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 335, 378, 656
HpyF3I	CTNAG	4 cut(s)	105, 249, 577, 698
Hsp92II	CATG	2 cut(s)	142, 440
Kzo9I	GATC	3 cut(s)	569, 750, 856
LmnI	GCTCC	2 cut(s)	176, 581
Lsp1109I	GCAGC	4 cut(s)	191, 328, 444, 662
LweI	GCATC	3 cut(s)	19, 224, 862
MaeI	CTAG	6 cut(s)	345, 567, 585, 800, 917, 1036
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	3 cut(s)	571, 752, 858
MboI	GATC	3 cut(s)	569, 750, 856
MboII	GAAGA	4 cut(s)	210, 493, 652, 1021
MflI	RGATCY	1 cut(s)	569
MluCI	AATT	5 cut(s)	295, 307, 407, 602, 791
MlyI	GAGTC	4 cut(s)	195, 197, 700, 812
MmeI	TCCRAC	2 cut(s)	248, 529
MseI	TTAA	3 cut(s)	48, 735, 978
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	341
MvnI	CGCG	1 cut(s)	891
MwoI	GCNNNNNNNGC	4 cut(s)	68, 335, 378, 656
NcoI	CCATGG	1 cut(s)	436
NdeII	GATC	3 cut(s)	569, 750, 856
NlaIII	CATG	2 cut(s)	142, 440
NlaIV	GGNNCC	2 cut(s)	90, 456
NmuCI	GTSAC	1 cut(s)	52
PflMI	CCANNNNNTGG	1 cut(s)	442
PkrI	GCNGC	5 cut(s)	181, 340, 343, 434, 652
PleI	GAGTC	4 cut(s)	194, 197, 700, 811
PpsI	GAGTC	4 cut(s)	194, 197, 700, 811
PsiI	TTATAA	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	90, 456
PspPI	GGNCC	2 cut(s)	336, 455
PsuI	RGATCY	1 cut(s)	569
RsaI	GTAC	4 cut(s)	525, 545, 618, 689
RsaNI	GTAC	4 cut(s)	524, 544, 617, 688
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	3 cut(s)	48, 735, 978
SatI	GCNGC	5 cut(s)	180, 339, 342, 433, 651
Sau3AI	GATC	3 cut(s)	569, 750, 856
Sau96I	GGNCC	2 cut(s)	336, 455
SchI	GAGTC	4 cut(s)	195, 197, 700, 812
SfaNI	GCATC	3 cut(s)	19, 224, 862
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	2 cut(s)	208, 708
SmoI	CTYRAG	2 cut(s)	208, 708
Sse9I	AATT	5 cut(s)	295, 307, 407, 602, 791
SsiI	CCGC	4 cut(s)	174, 339, 372, 494
SspMI	CTAG	6 cut(s)	345, 567, 585, 800, 917, 1036
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	4 cut(s)	58, 84, 268, 289
TaqI	TCGA	2 cut(s)	859, 1019
TasI	AATT	5 cut(s)	295, 307, 407, 602, 791
TatI	WGTACW	2 cut(s)	543, 616
TauI	GCSGC	1 cut(s)	341
Tru1I	TTAA	3 cut(s)	48, 735, 978
Tru9I	TTAA	3 cut(s)	48, 735, 978
TscAI	CASTG	2 cut(s)	336, 520
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	4 cut(s)	179, 341, 432, 650
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	155, 843
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	2 cut(s)	336, 520
Van91I	CCANNNNNTGG	1 cut(s)	442
XapI	RAATTY	2 cut(s)	602, 791
XcmI	CCANNNNNNNNNTGG	1 cut(s)	765
XspI	CTAG	6 cut(s)	345, 567, 585, 800, 917, 1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.