Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006485

Physical Location & Seq

Genomic Coordinates Forward (+)

3456492 .. 3459494

Gene Structure 3003 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00220860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGACCAACCAAAATGTGCTTATTTCCGATGTCAAAGGCGTGGCTGTGGCTGTTGCTGCCATGAAGAATCAGTCTGTGTTCTCTTCATCGGTGGCGAATTCCATGATTGAATCAGGAGGAGGAGGCGGGTGTAATTTTACCATTCCCAGGAGTATTAAGCTCTTGAAGGTTGAGACTGCAGAGGTTGGTGGTGGTGGTGGTGGTGGTGGTGGAGCTGCCCGAGTCAATGCTTGGGTGGACTCATTGAGAGCTTCGTCACCGCCGCGTGTTAAATCCACCACCACTGCCCCCTCCACTCTTTCTCAAACTGGGGATGAAGAAAACTCTTGGAATCTTCGTCACCCATCAGCTATGAGCATGTTTGAGCAGATCACAAATGCTTCAAAGGGGAAGCAGATTATCATGTTTCTTGACTACGATGGTACTCTTTCACCCATTGTTGAAGACCCAGACAGAGCATTCATGTCCAATGAGATGAGAAAAGCTGTGAGGGCAGTTGCCAGATATTTTCCTACAGCCATAGTTAGTGGGAGGTGCAGAGACAAGGTTTATAGCTTTGTGAAATTATCAGAGCTTTATTACGCAGGAAGCCATGGGATGGACATTAGAGGACCATCCAAAAGTAACAAGTACAAGAATGCTAATCAAGCAGTTCTCTTCCAACCAGCCAATGAATTTTTACCCATGATTGATGAGGTGTGCAAAATTCTAGTGGAGAAAACCAAATCCATCTCAGGAGCTAGGGTGGAAAATAATAAGTTTTGTTTATCTGTACACTTCCGTTGTGTTGAGGAGAAGAGTTGGGCTGCTCTGGCAGAGCAAGTTAGATTGGTGCTAAATGAGTATCCAAAGCTGAAGCTGACTCAAGGGAGAAAGGTCTTAGAGATTAGGCCAACTATCAAATGGGACAAGGGCAAAGCACTTGAATTCTTGCTAGAGTCATTAGGATATGCCAACTCAAGTGAAGTATTACCGGTCTATATTGGAGATGATAGAACAGATGAGGATGCTTTCAAGGTTTTAAGCGATAGAGGACAAGGATTTGGAATTCTTGTTTCTAAAGTTCCAAAAGAAACAAATGCTTCTTATTCCTTGCAAGAACCAGCAGAGGTCAAGGACTTTTTGCGACGTTTAGTGAAGTGGAAAAGATTGACGTTGCAACAACGAAAAATAGACTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004805 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0015927 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016798 GO:0019203 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

393

Amino Acids

43.25

Weight (kDa)

9.29

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	136 - 368	6.6e-75	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35910
fragaria_vesca	FvH4_3g04100 FvH4_3g04100 FvH4_3g04100 FvH4_3g04100 FvH4_5g37780 FvH4_5g37780 FvH4_5g37780 FvH4_5g37780
malus_domestica	MD08G1180400.v1.1 MD15G1365900.v1.1
prunus_persica	Prupe.1G513800_v2.0.a1
pyrus_communis	pycom08g15440 pycom15g32820
rosa_chinensis	RchiOBHm_Chr7g0239531
rosa_laevigata	RLG00000000747
rosa_multiflora	Rmu_sc0003379.1_g000024
rosa_roxburghii	Rroxscaffold_3G00220860
rosa_rugosa	Rorug07G0328400 Rorug07G0328400
rosa_samantha	Rh7AG482300 Rh7BG286700 Rh7BG455100 Rh7CG500000 Rh7DG468200
rosa_wichuraiana	Rw7G040390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	598
AccII	CGCG	1 cut(s)	265
AciI	CCGC	3 cut(s)	126, 260, 263
AcsI	RAATTY	5 cut(s)	97, 674, 705, 926, 1047
AcuI	CTGAAG	1 cut(s)	875
AfaI	GTAC	3 cut(s)	424, 632, 774
AfiI	CCNNNNNNNGG	2 cut(s)	147, 598
AgeI	ACCGGT	1 cut(s)	973
AgsI	TTSAA	6 cut(s)	110, 166, 384, 443, 926, 1015
AjnI	CCWGG	1 cut(s)	146
Alw26I	GTCTC	2 cut(s)	167, 534
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	1 cut(s)	890
ApeKI	GCWGC	3 cut(s)	56, 215, 806
ApoI	RAATTY	5 cut(s)	97, 674, 705, 926, 1047
AsiGI	ACCGGT	1 cut(s)	973
AspS9I	GGNCC	1 cut(s)	611
AsuHPI	GGTGA	3 cut(s)	249, 332, 423
AvaI	CYCGRG	1 cut(s)	219
AvaII	GGWCC	1 cut(s)	611
BbsI	GAAGAC	1 cut(s)	450
BbvI	GCAGC	3 cut(s)	43, 202, 793
BccI	CCATC	5 cut(s)	352, 413, 592, 622, 737
BciT130I	CCWGG	1 cut(s)	148
BciVI	GTATCC	1 cut(s)	855
BcoDI	GTCTC	2 cut(s)	167, 534
BfaI	CTAG	3 cut(s)	710, 741, 935
BfmI	CTRYAG	2 cut(s)	177, 513
BfuI	GTATCC	1 cut(s)	855
BisI	GCNGC	4 cut(s)	57, 216, 263, 807
BlsI	GCNGC	4 cut(s)	58, 217, 264, 808
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	611
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	611
BmrFI	CCNGG	1 cut(s)	148
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	1 cut(s)	997
BmuI	ACTGGG	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	450
BpuEI	CTTGAG	2 cut(s)	849, 943
BsaJI	CCNNGG	2 cut(s)	146, 592
BsaWI	WCCGGW	1 cut(s)	973
BsaXI	ACNNNNNCTCC	2 cut(s)	729, 759
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 598
Bse118I	RCCGGY	1 cut(s)	973
Bse1I	ACTGG	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	146, 592
BseGI	GGATG	4 cut(s)	319, 603, 614, 1012
BseLI	CCNNNNNNNGG	2 cut(s)	147, 598
BseMII	CTCAG	1 cut(s)	747
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	3 cut(s)	132, 135, 806
BseXI	GCAGC	3 cut(s)	43, 202, 793
BsgI	GTGCAG	1 cut(s)	556
Bsh1236I	CGCG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	892
BshTI	ACCGGT	1 cut(s)	973
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	974
BslFI	GGGAC	1 cut(s)	920
BslI	CCNNNNNNNGG	2 cut(s)	147, 598
BsmAI	GTCTC	2 cut(s)	167, 534
BsmFI	GGGAC	1 cut(s)	920
BsmI	GAATGC	2 cut(s)	458, 643
BsnI	GGCC	1 cut(s)	892
BsoBI	CYCGRG	1 cut(s)	219
Bsp1407I	TGTACA	1 cut(s)	772
Bsp143I	GATC	1 cut(s)	369
Bsp19I	CCATGG	1 cut(s)	592
BspACI	CCGC	3 cut(s)	126, 260, 263
BspANI	GGCC	1 cut(s)	892
BspCNI	CTCAG	1 cut(s)	746
BspFNI	CGCG	1 cut(s)	265
BspMAI	CTGCAG	1 cut(s)	181
BsrFI	RCCGGY	1 cut(s)	973
BsrGI	TGTACA	1 cut(s)	772
BsrI	ACTGG	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	973
BssECI	CCNNGG	2 cut(s)	146, 592
BssMI	GATC	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	592
Bst2UI	CCWGG	1 cut(s)	148
Bst6I	CTCTTC	3 cut(s)	88, 662, 791
BstAUI	TGTACA	1 cut(s)	772
BstDEI	CTNAG	2 cut(s)	733, 880
BstDSI	CCRYGG	1 cut(s)	592
BstF5I	GGATG	4 cut(s)	319, 603, 614, 1012
BstFNI	CGCG	1 cut(s)	265
BstKTI	GATC	1 cut(s)	372
BstMAI	GTCTC	2 cut(s)	167, 534
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 491, 647, 812
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	146
BstSFI	CTRYAG	2 cut(s)	177, 513
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	3 cut(s)	43, 202, 793
BstV2I	GAAGAC	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	855
BsuRI	GGCC	1 cut(s)	892
BtgI	CCRYGG	1 cut(s)	592
BtsCI	GGATG	4 cut(s)	319, 603, 614, 1012
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
Cfr10I	RCCGGY	1 cut(s)	973
Cfr13I	GGNCC	1 cut(s)	611
Csp6I	GTAC	3 cut(s)	423, 631, 773
CspAI	ACCGGT	1 cut(s)	973
CviAII	CATG	7 cut(s)	61, 103, 358, 403, 463, 593, 685
CviQI	GTAC	3 cut(s)	423, 631, 773
DdeI	CTNAG	2 cut(s)	733, 880
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
Eam1104I	CTCTTC	3 cut(s)	88, 662, 791
EarI	CTCTTC	3 cut(s)	88, 662, 791
Eco130I	CCWWGG	1 cut(s)	592
Eco47I	GGWCC	1 cut(s)	611
Eco57I	CTGAAG	1 cut(s)	875
Eco88I	CYCGRG	1 cut(s)	219
EcoRI	GAATTC	3 cut(s)	97, 926, 1047
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	592
ErhI	CCWWGG	1 cut(s)	592
FaeI	CATG	7 cut(s)	64, 106, 361, 406, 466, 596, 688
FaqI	GGGAC	1 cut(s)	920
FatI	CATG	7 cut(s)	60, 102, 357, 402, 462, 592, 684
FauI	CCCGC	1 cut(s)	119
Fnu4HI	GCNGC	4 cut(s)	57, 216, 263, 807
FokI	GGATG	4 cut(s)	326, 601, 610, 1019
Fsp4HI	GCNGC	4 cut(s)	57, 216, 263, 807
FspBI	CTAG	3 cut(s)	710, 741, 935
GluI	GCNGC	4 cut(s)	57, 216, 263, 807
HaeIII	GGCC	1 cut(s)	892
HapII	CCGG	1 cut(s)	974
Hin1II	CATG	7 cut(s)	64, 106, 361, 406, 466, 596, 688
HinfI	GANTC	8 cut(s)	67, 110, 222, 239, 331, 862, 938, 1175
HpaII	CCGG	1 cut(s)	974
HphI	GGTGA	3 cut(s)	249, 332, 423
Hpy166II	GTNNAC	2 cut(s)	238, 775
Hpy188I	TCNGA	2 cut(s)	28, 571
Hpy188III	TCNNGA	4 cut(s)	114, 163, 410, 735
Hpy8I	GTNNAC	2 cut(s)	238, 775
Hpy99I	CGWCG	1 cut(s)	1131
HpyAV	CCTTC	1 cut(s)	160
HpyCH4IV	ACGT	2 cut(s)	1129, 1154
HpyCH4V	TGCA	5 cut(s)	179, 537, 702, 1096, 1159
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 491, 647, 812
HpyF3I	CTNAG	2 cut(s)	733, 880
HpySE526I	ACGT	2 cut(s)	1129, 1154
Hsp92II	CATG	7 cut(s)	64, 106, 361, 406, 466, 596, 688
Kzo9I	GATC	1 cut(s)	369
LmnI	GCTCC	2 cut(s)	212, 737
Lsp1109I	GCAGC	3 cut(s)	43, 202, 793
LweI	GCATC	1 cut(s)	997
MaeI	CTAG	3 cut(s)	710, 741, 935
MaeII	ACGT	2 cut(s)	1129, 1154
MaeIII	GTNAC	3 cut(s)	255, 338, 623
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	7 cut(s)	75, 76, 326, 329, 455, 649, 808
MluCI	AATT	7 cut(s)	97, 133, 563, 674, 705, 926, 1047
MlyI	GAGTC	5 cut(s)	231, 233, 856, 947, 1169
MmeI	TCCRAC	1 cut(s)	685
MseI	TTAA	3 cut(s)	156, 270, 1022
MspI	CCGG	1 cut(s)	974
MspR9I	CCNGG	1 cut(s)	148
Mva1269I	GAATGC	2 cut(s)	458, 643
MvaI	CCWGG	1 cut(s)	148
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	4 cut(s)	56, 491, 647, 812
NcoI	CCATGG	1 cut(s)	592
NdeII	GATC	1 cut(s)	369
NlaIII	CATG	7 cut(s)	64, 106, 361, 406, 466, 596, 688
NmuCI	GTSAC	2 cut(s)	255, 338
NspI	RCATGY	1 cut(s)	361
PctI	GAATGC	2 cut(s)	458, 643
PfeI	GAWTC	3 cut(s)	67, 110, 331
PflMI	CCANNNNNTGG	1 cut(s)	598
PinAI	ACCGGT	1 cut(s)	973
PkrI	GCNGC	4 cut(s)	58, 217, 264, 808
PleI	GAGTC	5 cut(s)	230, 233, 856, 946, 1169
PpsI	GAGTC	5 cut(s)	230, 233, 856, 946, 1169
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	611
PstI	CTGCAG	1 cut(s)	181
RsaI	GTAC	3 cut(s)	424, 632, 774
RsaNI	GTAC	3 cut(s)	423, 631, 773
SaqAI	TTAA	3 cut(s)	156, 270, 1022
SatI	GCNGC	4 cut(s)	57, 216, 263, 807
Sau3AI	GATC	1 cut(s)	369
Sau96I	GGNCC	1 cut(s)	611
SchI	GAGTC	5 cut(s)	231, 233, 856, 947, 1169
ScrFI	CCNGG	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	997
SfcI	CTRYAG	2 cut(s)	177, 513
SinI	GGWCC	1 cut(s)	611
SmlI	CTYRAG	2 cut(s)	864, 958
SmoI	CTYRAG	2 cut(s)	864, 958
Sse9I	AATT	7 cut(s)	97, 133, 563, 674, 705, 926, 1047
SsiI	CCGC	3 cut(s)	126, 260, 263
SspMI	CTAG	3 cut(s)	710, 741, 935
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	592
TaiI	ACGT	2 cut(s)	1132, 1157
TasI	AATT	7 cut(s)	97, 133, 563, 674, 705, 926, 1047
TatI	WGTACW	2 cut(s)	630, 772
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	3 cut(s)	67, 110, 331
Tru1I	TTAA	3 cut(s)	156, 270, 1022
Tru9I	TTAA	3 cut(s)	156, 270, 1022
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	2 cut(s)	255, 338
TseI	GCWGC	3 cut(s)	56, 215, 806
Tsp45I	GTSAC	2 cut(s)	255, 338
TspDTI	ATGAA	5 cut(s)	75, 77, 330, 451, 687
TspGWI	ACGGA	1 cut(s)	770
TspRI	CASTG	1 cut(s)	289
Van91I	CCANNNNNTGG	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	611
XapI	RAATTY	5 cut(s)	97, 674, 705, 926, 1047
XceI	RCATGY	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	900
XspI	CTAG	3 cut(s)	710, 741, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.