Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003379.1

Orthogroup ID

OG0006485

Physical Location & Seq

Genomic Coordinates Reverse (-)

84596 .. 87204

Gene Structure 2609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003379.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

atgaccaaccaaaatgtgcttatttccgatgtcaaaggcgtggttgtggctgttgctgccatgaagaatcagtctgtattctcttcatcggtggcgaattccatgattgaatcaggaggaggaggcgggtgtaatttcaccattcccaggagtattaagctcttgaaggttgagactgcagaggttggtggtggtggtggtggagctgcccgagtcaatgcttgggtggactcattgagagcttcgtcaccgccgcgtgttaaatccaccaccactgccctctccactctttctcaaactggggatgaagaaaactcttggaatcttcgacacccatcagctatgagcatgtttgagcagatcacaaatgcttcaaaggggaagcagattatcatgtttcttgactacgatggtactctttcacccattgttgaagacccagacagagcattcatgtccaatgagatgagaaaagctgtgagggcagttgctagatattttcctacagccatagttagtgggaggtgcagagacaaggtttatagctttgtgaaattatcagagctttattacgcaggaagccatgggatggacattagaggaccatccaaaagtaacaagtacaagaatgctaatcaagcagttctcttccaaccagccaatgaatttttacccatgattgatgaggtgtgcaaaattctagtggagaaaaccaaatcgatctcaggagctagggtggaaaataataagttttgtttatctgtacacttccgttgtgttgaggagaagagttgggctgctctggcagagcaagttagattggtgctaaatgagtatccaaagctgaagctgactcaagggagaaaggtcttagagattaggccaactatcaaatgggacaagggcaaagcacttgaattcttgctagagtcattaggatatgccaactcaagtgaagtattaccggtctatatcggagatgatagaacagatgaggatgctttcaaggttttaagcgatagaggacaaggatttggaattcttgtttctaaagttccaaaagaaacaaatgcttcttattccttgcaagaaccagcagaggtcaaggactttttgcgacgtttagtgaagtggaaaagattgacgttgcaacaacgaaaaatagactcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004805 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0015927 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016798 GO:0019203 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

390

Amino Acids

43.12

Weight (kDa)

9.29

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35910
fragaria_vesca	FvH4_3g04100 FvH4_3g04100 FvH4_3g04100 FvH4_3g04100 FvH4_5g37780 FvH4_5g37780 FvH4_5g37780 FvH4_5g37780
malus_domestica	MD08G1180400.v1.1 MD15G1365900.v1.1
prunus_persica	Prupe.1G513800_v2.0.a1
pyrus_communis	pycom08g15440 pycom15g32820
rosa_chinensis	RchiOBHm_Chr7g0239531
rosa_laevigata	RLG00000000747
rosa_multiflora	Rmu_sc0003379.1_g000024
rosa_roxburghii	Rroxscaffold_3G00220860
rosa_rugosa	Rorug07G0328400 Rorug07G0328400
rosa_samantha	Rh7AG482300 Rh7BG286700 Rh7BG455100 Rh7CG500000 Rh7DG468200
rosa_wichuraiana	Rw7G040390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	589
AccII	CGCG	1 cut(s)	256
AciI	CCGC	3 cut(s)	126, 251, 254
AcsI	RAATTY	5 cut(s)	97, 665, 696, 917, 1038
AcuI	CTGAAG	1 cut(s)	866
AfaI	GTAC	3 cut(s)	415, 623, 765
AfiI	CCNNNNNNNGG	2 cut(s)	147, 589
AgeI	ACCGGT	1 cut(s)	964
AgsI	TTSAA	6 cut(s)	110, 166, 375, 434, 917, 1006
AjnI	CCWGG	1 cut(s)	146
Alw26I	GTCTC	2 cut(s)	167, 525
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	1 cut(s)	881
ApeKI	GCWGC	3 cut(s)	56, 206, 797
ApoI	RAATTY	5 cut(s)	97, 665, 696, 917, 1038
AsiGI	ACCGGT	1 cut(s)	964
AspS9I	GGNCC	1 cut(s)	602
AsuHPI	GGTGA	3 cut(s)	130, 240, 414
AvaI	CYCGRG	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	602
BbsI	GAAGAC	1 cut(s)	441
BbvI	GCAGC	3 cut(s)	43, 193, 784
BccI	CCATC	4 cut(s)	343, 404, 583, 613
BciT130I	CCWGG	1 cut(s)	148
BciVI	GTATCC	1 cut(s)	846
BcoDI	GTCTC	2 cut(s)	167, 525
BfaI	CTAG	4 cut(s)	492, 701, 732, 926
BfmI	CTRYAG	2 cut(s)	177, 504
BfuI	GTATCC	1 cut(s)	846
BisI	GCNGC	4 cut(s)	57, 207, 254, 798
BlsI	GCNGC	4 cut(s)	58, 208, 255, 799
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	602
BmeT110I	CYCGRG	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	602
BmrFI	CCNGG	1 cut(s)	148
BmrI	ACTGGG	1 cut(s)	309
BmsI	GCATC	1 cut(s)	988
BmuI	ACTGGG	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	441
BpuEI	CTTGAG	2 cut(s)	840, 934
Bsa29I	ATCGAT	1 cut(s)	719
BsaJI	CCNNGG	2 cut(s)	146, 583
BsaWI	WCCGGW	1 cut(s)	964
BsaXI	ACNNNNNCTCC	2 cut(s)	720, 750
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 589
Bse118I	RCCGGY	1 cut(s)	964
Bse1I	ACTGG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	148
BseCI	ATCGAT	1 cut(s)	719
BseDI	CCNNGG	2 cut(s)	146, 583
BseGI	GGATG	4 cut(s)	310, 594, 605, 1003
BseLI	CCNNNNNNNGG	2 cut(s)	147, 589
BseMII	CTCAG	1 cut(s)	738
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	3 cut(s)	132, 135, 797
BseXI	GCAGC	3 cut(s)	43, 193, 784
BsgI	GTGCAG	1 cut(s)	547
Bsh1236I	CGCG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	883
BshTI	ACCGGT	1 cut(s)	964
BshVI	ATCGAT	1 cut(s)	719
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	965
BslFI	GGGAC	1 cut(s)	911
BslI	CCNNNNNNNGG	2 cut(s)	147, 589
BsmAI	GTCTC	2 cut(s)	167, 525
BsmFI	GGGAC	1 cut(s)	911
BsmI	GAATGC	2 cut(s)	449, 634
BsnI	GGCC	1 cut(s)	883
BsoBI	CYCGRG	1 cut(s)	210
Bsp1407I	TGTACA	1 cut(s)	763
Bsp143I	GATC	2 cut(s)	360, 720
Bsp19I	CCATGG	1 cut(s)	583
BspACI	CCGC	3 cut(s)	126, 251, 254
BspANI	GGCC	1 cut(s)	883
BspCNI	CTCAG	1 cut(s)	737
BspDI	ATCGAT	1 cut(s)	719
BspFNI	CGCG	1 cut(s)	256
BspMAI	CTGCAG	1 cut(s)	181
BsrFI	RCCGGY	1 cut(s)	964
BsrGI	TGTACA	1 cut(s)	763
BsrI	ACTGG	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	964
BssECI	CCNNGG	2 cut(s)	146, 583
BssMI	GATC	2 cut(s)	360, 720
BssT1I	CCWWGG	1 cut(s)	583
Bst2UI	CCWGG	1 cut(s)	148
Bst6I	CTCTTC	3 cut(s)	88, 653, 782
BstAUI	TGTACA	1 cut(s)	763
BstDEI	CTNAG	2 cut(s)	724, 871
BstDSI	CCRYGG	1 cut(s)	583
BstF5I	GGATG	4 cut(s)	310, 594, 605, 1003
BstFNI	CGCG	1 cut(s)	256
BstKTI	GATC	2 cut(s)	363, 723
BstMAI	GTCTC	2 cut(s)	167, 525
BstMBI	GATC	2 cut(s)	360, 720
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 482, 638, 803
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	146
BstSFI	CTRYAG	2 cut(s)	177, 504
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	3 cut(s)	43, 193, 784
BstV2I	GAAGAC	1 cut(s)	441
Bsu15I	ATCGAT	1 cut(s)	719
BsuI	GTATCC	1 cut(s)	846
BsuRI	GGCC	1 cut(s)	883
BsuTUI	ATCGAT	1 cut(s)	719
BtgI	CCRYGG	1 cut(s)	583
BtsCI	GGATG	4 cut(s)	310, 594, 605, 1003
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	964
Cfr13I	GGNCC	1 cut(s)	602
ClaI	ATCGAT	1 cut(s)	719
Csp6I	GTAC	3 cut(s)	414, 622, 764
CspAI	ACCGGT	1 cut(s)	964
CviAII	CATG	7 cut(s)	61, 103, 349, 394, 454, 584, 676
CviQI	GTAC	3 cut(s)	414, 622, 764
DdeI	CTNAG	2 cut(s)	724, 871
DpnI	GATC	2 cut(s)	362, 722
DpnII	GATC	2 cut(s)	360, 720
Eam1104I	CTCTTC	3 cut(s)	88, 653, 782
EarI	CTCTTC	3 cut(s)	88, 653, 782
Eco130I	CCWWGG	1 cut(s)	583
Eco47I	GGWCC	1 cut(s)	602
Eco57I	CTGAAG	1 cut(s)	866
Eco88I	CYCGRG	1 cut(s)	210
EcoRI	GAATTC	3 cut(s)	97, 917, 1038
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	583
ErhI	CCWWGG	1 cut(s)	583
FaeI	CATG	7 cut(s)	64, 106, 352, 397, 457, 587, 679
FaqI	GGGAC	1 cut(s)	911
FatI	CATG	7 cut(s)	60, 102, 348, 393, 453, 583, 675
FauI	CCCGC	1 cut(s)	119
Fnu4HI	GCNGC	4 cut(s)	57, 207, 254, 798
FokI	GGATG	4 cut(s)	317, 592, 601, 1010
Fsp4HI	GCNGC	4 cut(s)	57, 207, 254, 798
FspBI	CTAG	4 cut(s)	492, 701, 732, 926
GluI	GCNGC	4 cut(s)	57, 207, 254, 798
HaeIII	GGCC	1 cut(s)	883
HapII	CCGG	1 cut(s)	965
Hin1II	CATG	7 cut(s)	64, 106, 352, 397, 457, 587, 679
HinfI	GANTC	8 cut(s)	67, 110, 213, 230, 322, 853, 929, 1166
HpaII	CCGG	1 cut(s)	965
HphI	GGTGA	3 cut(s)	130, 240, 414
Hpy166II	GTNNAC	2 cut(s)	229, 766
Hpy188I	TCNGA	3 cut(s)	28, 562, 977
Hpy188III	TCNNGA	4 cut(s)	114, 163, 401, 726
Hpy8I	GTNNAC	2 cut(s)	229, 766
Hpy99I	CGWCG	1 cut(s)	1122
HpyAV	CCTTC	1 cut(s)	160
HpyCH4IV	ACGT	2 cut(s)	1120, 1145
HpyCH4V	TGCA	5 cut(s)	179, 528, 693, 1087, 1150
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 482, 638, 803
HpyF3I	CTNAG	2 cut(s)	724, 871
HpySE526I	ACGT	2 cut(s)	1120, 1145
Hsp92II	CATG	7 cut(s)	64, 106, 352, 397, 457, 587, 679
Kzo9I	GATC	2 cut(s)	360, 720
LmnI	GCTCC	2 cut(s)	203, 728
Lsp1109I	GCAGC	3 cut(s)	43, 193, 784
LweI	GCATC	1 cut(s)	988
MaeI	CTAG	4 cut(s)	492, 701, 732, 926
MaeII	ACGT	2 cut(s)	1120, 1145
MaeIII	GTNAC	2 cut(s)	246, 614
MalI	GATC	2 cut(s)	362, 722
MboI	GATC	2 cut(s)	360, 720
MboII	GAAGA	7 cut(s)	75, 76, 317, 320, 446, 640, 799
MluCI	AATT	7 cut(s)	97, 133, 554, 665, 696, 917, 1038
MlyI	GAGTC	5 cut(s)	222, 224, 847, 938, 1160
MmeI	TCCRAC	1 cut(s)	676
MseI	TTAA	3 cut(s)	156, 261, 1013
MspI	CCGG	1 cut(s)	965
MspR9I	CCNGG	1 cut(s)	148
Mva1269I	GAATGC	2 cut(s)	449, 634
MvaI	CCWGG	1 cut(s)	148
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	4 cut(s)	56, 482, 638, 803
NcoI	CCATGG	1 cut(s)	583
NdeII	GATC	2 cut(s)	360, 720
NlaIII	CATG	7 cut(s)	64, 106, 352, 397, 457, 587, 679
NmuCI	GTSAC	1 cut(s)	246
NspI	RCATGY	1 cut(s)	352
PctI	GAATGC	2 cut(s)	449, 634
PfeI	GAWTC	3 cut(s)	67, 110, 322
PflMI	CCANNNNNTGG	1 cut(s)	589
PinAI	ACCGGT	1 cut(s)	964
PkrI	GCNGC	4 cut(s)	58, 208, 255, 799
PleI	GAGTC	5 cut(s)	221, 224, 847, 937, 1160
PpsI	GAGTC	5 cut(s)	221, 224, 847, 937, 1160
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	602
PstI	CTGCAG	1 cut(s)	181
RsaI	GTAC	3 cut(s)	415, 623, 765
RsaNI	GTAC	3 cut(s)	414, 622, 764
SaqAI	TTAA	3 cut(s)	156, 261, 1013
SatI	GCNGC	4 cut(s)	57, 207, 254, 798
Sau3AI	GATC	2 cut(s)	360, 720
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	5 cut(s)	222, 224, 847, 938, 1160
ScrFI	CCNGG	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	988
SfcI	CTRYAG	2 cut(s)	177, 504
SinI	GGWCC	1 cut(s)	602
SmlI	CTYRAG	2 cut(s)	855, 949
SmoI	CTYRAG	2 cut(s)	855, 949
Sse9I	AATT	7 cut(s)	97, 133, 554, 665, 696, 917, 1038
SsiI	CCGC	3 cut(s)	126, 251, 254
SspMI	CTAG	4 cut(s)	492, 701, 732, 926
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	583
TaiI	ACGT	2 cut(s)	1123, 1148
TaqI	TCGA	2 cut(s)	328, 719
TasI	AATT	7 cut(s)	97, 133, 554, 665, 696, 917, 1038
TatI	WGTACW	2 cut(s)	621, 763
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	3 cut(s)	67, 110, 322
Tru1I	TTAA	3 cut(s)	156, 261, 1013
Tru9I	TTAA	3 cut(s)	156, 261, 1013
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	1 cut(s)	246
TseI	GCWGC	3 cut(s)	56, 206, 797
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	5 cut(s)	75, 77, 321, 442, 678
TspGWI	ACGGA	1 cut(s)	761
TspRI	CASTG	1 cut(s)	280
Van91I	CCANNNNNTGG	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	602
XapI	RAATTY	5 cut(s)	97, 665, 696, 917, 1038
XceI	RCATGY	1 cut(s)	352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	891
XspI	CTAG	4 cut(s)	492, 701, 732, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.