Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006485

Physical Location & Seq

Genomic Coordinates Forward (+)

42294887 .. 42297864

Gene Structure 2978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G513800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGACCAACCAAAATGTGGTTGTTTCTGATGCGAAAGGTGTGGCTGTTACAGTGGCTGTTACAGTGACTGTTGCGAACCAGTCCATGTTCTCTTCCTCTGTGCCGAAGCCAAGGACTGCTGAGGCAGGAGGAGGTGGAGGCTGCTTCACCATTCCCAGGAACATTAAGCTTTTGAAGGTTGAGACAGAAGGTGGAGCTGCCAGAGTCAATGCTTGGGTTGACTCTCTGAGAGCTTCTTCTCCACCTCGTGTGAAATCTGCCACTGAAACTGTGGATTATAGCTCTTGGAATCTTCATCATCCTTCAGCTATGAGCATGTTCGAGGAGATAACAAATTATTCAAAGGGCAAGCAGATTGTGCTCTTTCTTGACTATGACGGGACCCTCTCCCCCATTGTGGAAGACCCAGATCGAGCTTTCATGTCCAGAGAGATGAGAAACGCTGTGAAGGCTGCTGCTAGATACTTTCCTACAGCAATAGTCAGCGGGAGGTGCAGAGACAAGGTTCATAGCTTTGTGAAATTAGGAGAGCTCTACTATGCAGGCAGCCATGGGATGGACATCAAAGGACCATCCAAAAGTAGCAAATATAAGAATGGTAATCAAGCAGTTCTCTTCCAACCAGCCAGTGAGTTCGTACCAATGATTGATGAGGTGTGCAAAATTTTAGTGGAGAAAACCAGATCCATCTCAGGAGCAAGGGTGGAAAATAATAAGTTTTGCTTATCTGTACACTTTCGTTGTGTTGATGAGAAGAGTTGGGCTGCTTTAGCAGAGCAAGTCAGACTAGTGCTCAATGAGTATCCAAAGCTCAGGTTGACTCAGGGGAGAAAGGTATTAGAGATCAGGCCAACCATCAAATGGGACAAGGGCAAAGCTCTTGAATTCTTGCTAGAGTCATTAGGATATGCGAATTCAAATGAAGTGCTACCAGTCTATATTGGAGATGATCGAACAGATGAGGATGCCTTCAAGGTGCTACGCGATAGAGGACAGGGGTTTGGAATTCTGGTTTCTAAAGTTCCAAAAGAAACAAATGCGTCCTATTCTTTACAAGAACCAGCAGAGGTTAAGGACTTTTTGTGGCGTTTGGTGGAGTGGAAAAGATTGTCCCAACAACAAAGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004805 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0015927 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016798 GO:0019203 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

377

Amino Acids

41.88

Weight (kDa)

9.17

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35910
fragaria_vesca	FvH4_3g04100 FvH4_3g04100 FvH4_3g04100 FvH4_3g04100 FvH4_5g37780 FvH4_5g37780 FvH4_5g37780 FvH4_5g37780
malus_domestica	MD08G1180400.v1.1 MD15G1365900.v1.1
prunus_persica	Prupe.1G513800_v2.0.a1
pyrus_communis	pycom08g15440 pycom15g32820
rosa_chinensis	RchiOBHm_Chr7g0239531
rosa_laevigata	RLG00000000747
rosa_multiflora	Rmu_sc0003379.1_g000024
rosa_roxburghii	Rroxscaffold_3G00220860
rosa_rugosa	Rorug07G0328400 Rorug07G0328400
rosa_samantha	Rh7AG482300 Rh7BG286700 Rh7BG455100 Rh7CG500000 Rh7DG468200
rosa_wichuraiana	Rw7G040390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	16, 556, 861
AccII	CGCG	1 cut(s)	984
AciI	CCGC	1 cut(s)	486
AclWI	GGATC	1 cut(s)	678
AcsI	RAATTY	4 cut(s)	663, 884, 913, 1005
AcuI	CTGAAG	1 cut(s)	288
AdeI	CACNNNGTG	1 cut(s)	248
AfaI	GTAC	2 cut(s)	639, 732
AfiI	CCNNNNNNNGG	5 cut(s)	16, 156, 397, 556, 861
AgsI	TTSAA	5 cut(s)	175, 342, 884, 918, 973
AhlI	ACTAGT	1 cut(s)	787
AjnI	CCWGG	1 cut(s)	155
Alw21I	GWGCWC	3 cut(s)	363, 534, 795
Alw26I	GTCTC	2 cut(s)	176, 492
AlwI	GGATC	1 cut(s)	678
AlwNI	CAGNNNCTG	2 cut(s)	56, 68
AoxI	GGCC	1 cut(s)	848
ApeKI	GCWGC	6 cut(s)	141, 197, 452, 455, 546, 764
ApoI	RAATTY	4 cut(s)	663, 884, 913, 1005
AspS9I	GGNCC	2 cut(s)	381, 569
AsuHPI	GGTGA	1 cut(s)	139
AvaII	GGWCC	2 cut(s)	381, 569
BanII	GRGCYC	1 cut(s)	534
BauI	CACGAG	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	3 cut(s)	363, 534, 795
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	6 cut(s)	128, 184, 439, 442, 558, 751
BccI	CCATC	4 cut(s)	550, 580, 695, 863
BciT130I	CCWGG	1 cut(s)	157
BciVI	GTATCC	1 cut(s)	813
BcoDI	GTCTC	2 cut(s)	176, 492
BcuI	ACTAGT	1 cut(s)	787
BfaI	CTAG	4 cut(s)	459, 788, 893, 1129
BfmI	CTRYAG	1 cut(s)	471
BfuI	GTATCC	1 cut(s)	813
BisI	GCNGC	6 cut(s)	142, 198, 453, 456, 547, 765
BlsI	GCNGC	6 cut(s)	143, 199, 454, 457, 548, 766
Bme1390I	CCNGG	1 cut(s)	157
Bme18I	GGWCC	2 cut(s)	381, 569
BmgT120I	GGNCC	2 cut(s)	381, 569
BmiI	GGNNCC	2 cut(s)	382, 383
BmrFI	CCNGG	1 cut(s)	157
BmsI	GCATC	2 cut(s)	19, 955
BpiI	GAAGAC	1 cut(s)	408
Bpu10I	CCTNAGC	2 cut(s)	120, 812
BsaBI	GATNNNNATC	1 cut(s)	560
BsaJI	CCNNGG	3 cut(s)	110, 155, 550
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	5 cut(s)	16, 156, 397, 556, 861
Bse1I	ACTGG	3 cut(s)	79, 627, 932
Bse8I	GATNNNNATC	1 cut(s)	560
BseBI	CCWGG	1 cut(s)	157
BseDI	CCNNGG	3 cut(s)	110, 155, 550
BseGI	GGATG	4 cut(s)	298, 561, 572, 970
BseJI	GATNNNNATC	1 cut(s)	560
BseLI	CCNNNNNNNGG	5 cut(s)	16, 156, 397, 556, 861
BseMII	CTCAG	5 cut(s)	111, 218, 705, 826, 836
BseNI	ACTGG	3 cut(s)	79, 627, 932
BseRI	GAGGAG	2 cut(s)	144, 338
BseXI	GCAGC	6 cut(s)	128, 184, 439, 442, 558, 751
BsgI	GTGCAG	1 cut(s)	514
Bsh1236I	CGCG	1 cut(s)	984
BshFI	GGCC	1 cut(s)	850
BsiHKAI	GWGCWC	3 cut(s)	363, 534, 795
BslFI	GGGAC	3 cut(s)	394, 878, 1096
BslI	CCNNNNNNNGG	5 cut(s)	16, 156, 397, 556, 861
BsmAI	GTCTC	2 cut(s)	176, 492
BsmFI	GGGAC	3 cut(s)	394, 878, 1096
BsnI	GGCC	1 cut(s)	850
Bsp1286I	GDGCHC	3 cut(s)	363, 534, 795
Bsp1407I	TGTACA	1 cut(s)	730
Bsp143I	GATC	4 cut(s)	409, 683, 843, 949
Bsp19I	CCATGG	1 cut(s)	550
BspACI	CCGC	1 cut(s)	486
BspANI	GGCC	1 cut(s)	850
BspCNI	CTCAG	5 cut(s)	112, 219, 704, 825, 835
BspFNI	CGCG	1 cut(s)	984
BspLI	GGNNCC	2 cut(s)	382, 383
BspPI	GGATC	1 cut(s)	678
BsrGI	TGTACA	1 cut(s)	730
BsrI	ACTGG	3 cut(s)	79, 627, 932
BssECI	CCNNGG	3 cut(s)	110, 155, 550
BssMI	GATC	4 cut(s)	409, 683, 843, 949
BssSI	CACGAG	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	110, 550
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	157
Bst4CI	ACNGT	4 cut(s)	52, 64, 70, 271
Bst6I	CTCTTC	3 cut(s)	97, 620, 749
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstAUI	TGTACA	1 cut(s)	730
BstC8I	GCNNGC	2 cut(s)	350, 544
BstDEI	CTNAG	5 cut(s)	120, 227, 691, 812, 822
BstDSI	CCRYGG	1 cut(s)	550
BstF5I	GGATG	4 cut(s)	298, 561, 572, 970
BstFNI	CGCG	1 cut(s)	984
BstKTI	GATC	4 cut(s)	412, 686, 846, 952
BstMAI	GTCTC	2 cut(s)	176, 492
BstMBI	GATC	4 cut(s)	409, 683, 843, 949
BstMWI	GCNNNNNNNGC	4 cut(s)	358, 449, 492, 770
BstNI	CCWGG	1 cut(s)	157
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	471
BstUI	CGCG	1 cut(s)	984
BstV1I	GCAGC	6 cut(s)	128, 184, 439, 442, 558, 751
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	683
BstYI	RGATCY	1 cut(s)	683
BsuI	GTATCC	1 cut(s)	813
BsuRI	GGCC	1 cut(s)	850
BtgI	CCRYGG	1 cut(s)	550
BtsCI	GGATG	4 cut(s)	298, 561, 572, 970
BtsIMutI	CAGTG	4 cut(s)	57, 69, 261, 634
Cac8I	GCNNGC	2 cut(s)	350, 544
CaiI	CAGNNNCTG	2 cut(s)	56, 68
Cfr13I	GGNCC	2 cut(s)	381, 569
CseI	GACGC	1 cut(s)	1029
Csp6I	GTAC	2 cut(s)	638, 731
CviAII	CATG	4 cut(s)	85, 316, 421, 551
CviQI	GTAC	2 cut(s)	638, 731
DdeI	CTNAG	5 cut(s)	120, 227, 691, 812, 822
DpnI	GATC	4 cut(s)	411, 685, 845, 951
DpnII	GATC	4 cut(s)	409, 683, 843, 949
DraIII	CACNNNGTG	1 cut(s)	248
Eam1104I	CTCTTC	3 cut(s)	97, 620, 749
EarI	CTCTTC	3 cut(s)	97, 620, 749
Ecl136II	GAGCTC	1 cut(s)	532
Eco130I	CCWWGG	2 cut(s)	110, 550
Eco24I	GRGCYC	1 cut(s)	534
Eco47I	GGWCC	2 cut(s)	381, 569
Eco53kI	GAGCTC	1 cut(s)	532
Eco57I	CTGAAG	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	532
EcoO109I	RGGNCCY	1 cut(s)	381
EcoRI	GAATTC	3 cut(s)	884, 913, 1005
EcoRII	CCWGG	1 cut(s)	155
EcoT14I	CCWWGG	2 cut(s)	110, 550
EcoT38I	GRGCYC	1 cut(s)	534
ErhI	CCWWGG	2 cut(s)	110, 550
FaeI	CATG	4 cut(s)	88, 319, 424, 554
FalI	AAGNNNNNCTT	2 cut(s)	707, 739
FaqI	GGGAC	3 cut(s)	394, 878, 1096
FatI	CATG	4 cut(s)	84, 315, 420, 550
FauI	CCCGC	1 cut(s)	479
Fnu4HI	GCNGC	6 cut(s)	142, 198, 453, 456, 547, 765
FokI	GGATG	4 cut(s)	285, 559, 568, 977
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	6 cut(s)	142, 198, 453, 456, 547, 765
FspBI	CTAG	4 cut(s)	459, 788, 893, 1129
GluI	GCNGC	6 cut(s)	142, 198, 453, 456, 547, 765
HaeIII	GGCC	1 cut(s)	850
HgaI	GACGC	1 cut(s)	1029
Hin1II	CATG	4 cut(s)	88, 319, 424, 554
HincII	GTYRAC	2 cut(s)	220, 819
HindII	GTYRAC	2 cut(s)	220, 819
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	5 cut(s)	204, 221, 289, 820, 896
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	3 cut(s)	220, 733, 819
Hpy188I	TCNGA	3 cut(s)	28, 228, 785
Hpy188III	TCNNGA	4 cut(s)	368, 426, 693, 881
Hpy8I	GTNNAC	3 cut(s)	220, 733, 819
HpyAV	CCTTC	5 cut(s)	169, 182, 312, 442, 979
HpyCH4III	ACNGT	4 cut(s)	52, 64, 70, 271
HpyCH4V	TGCA	3 cut(s)	495, 542, 660
HpyF10VI	GCNNNNNNNGC	4 cut(s)	358, 449, 492, 770
HpyF3I	CTNAG	5 cut(s)	120, 227, 691, 812, 822
Hsp92II	CATG	4 cut(s)	88, 319, 424, 554
KflI	GGGWCCC	1 cut(s)	381
Kzo9I	GATC	4 cut(s)	409, 683, 843, 949
LmnI	GCTCC	2 cut(s)	194, 695
Lsp1109I	GCAGC	6 cut(s)	128, 184, 439, 442, 558, 751
LweI	GCATC	2 cut(s)	19, 955
MaeI	CTAG	4 cut(s)	459, 788, 893, 1129
MaeIII	GTNAC	3 cut(s)	46, 58, 64
MalI	GATC	4 cut(s)	411, 685, 845, 951
MboI	GATC	4 cut(s)	409, 683, 843, 949
MboII	GAAGA	6 cut(s)	84, 228, 284, 413, 607, 766
MflI	RGATCY	1 cut(s)	683
MhlI	GDGCHC	3 cut(s)	363, 534, 795
MluCI	AATT	6 cut(s)	334, 521, 663, 884, 913, 1005
MlyI	GAGTC	4 cut(s)	213, 215, 814, 905
MmeI	TCCRAC	1 cut(s)	643
MseI	TTAA	2 cut(s)	165, 1071
MspA1I	CMGCKG	1 cut(s)	486
MspR9I	CCNGG	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	157
MvnI	CGCG	1 cut(s)	984
MwoI	GCNNNNNNNGC	4 cut(s)	358, 449, 492, 770
NcoI	CCATGG	1 cut(s)	550
NdeII	GATC	4 cut(s)	409, 683, 843, 949
NlaIII	CATG	4 cut(s)	88, 319, 424, 554
NlaIV	GGNNCC	2 cut(s)	382, 383
NmuCI	GTSAC	1 cut(s)	64
NspI	RCATGY	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	289
PflMI	CCANNNNNTGG	3 cut(s)	16, 556, 861
PkrI	GCNGC	6 cut(s)	143, 199, 454, 457, 548, 766
PleI	GAGTC	4 cut(s)	212, 215, 814, 904
PpsI	GAGTC	4 cut(s)	212, 215, 814, 904
PpuMI	RGGWCCY	1 cut(s)	381
Psp124BI	GAGCTC	1 cut(s)	534
Psp5II	RGGWCCY	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	382, 383
PspPI	GGNCC	2 cut(s)	381, 569
PspPPI	RGGWCCY	1 cut(s)	381
PstNI	CAGNNNCTG	2 cut(s)	56, 68
PsuI	RGATCY	1 cut(s)	683
RsaI	GTAC	2 cut(s)	639, 732
RsaNI	GTAC	2 cut(s)	638, 731
SacI	GAGCTC	1 cut(s)	534
SaqAI	TTAA	2 cut(s)	165, 1071
SatI	GCNGC	6 cut(s)	142, 198, 453, 456, 547, 765
Sau3AI	GATC	4 cut(s)	409, 683, 843, 949
Sau96I	GGNCC	2 cut(s)	381, 569
SchI	GAGTC	4 cut(s)	213, 215, 814, 905
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	3 cut(s)	363, 534, 795
SfaNI	GCATC	2 cut(s)	19, 955
SfcI	CTRYAG	1 cut(s)	471
SinI	GGWCC	2 cut(s)	381, 569
SpeI	ACTAGT	1 cut(s)	787
Sse9I	AATT	6 cut(s)	334, 521, 663, 884, 913, 1005
SsiI	CCGC	1 cut(s)	486
SspMI	CTAG	4 cut(s)	459, 788, 893, 1129
SstI	GAGCTC	1 cut(s)	534
StyD4I	CCNGG	1 cut(s)	155
StyI	CCWWGG	2 cut(s)	110, 550
TaaI	ACNGT	4 cut(s)	52, 64, 70, 271
TaqI	TCGA	3 cut(s)	321, 412, 952
TasI	AATT	6 cut(s)	334, 521, 663, 884, 913, 1005
TatI	WGTACW	1 cut(s)	730
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	2 cut(s)	165, 1071
Tru9I	TTAA	2 cut(s)	165, 1071
TscAI	CASTG	4 cut(s)	57, 69, 268, 634
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	6 cut(s)	141, 197, 452, 455, 546, 764
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	4 cut(s)	284, 409, 497, 936
TspRI	CASTG	4 cut(s)	57, 69, 268, 634
Van91I	CCANNNNNTGG	3 cut(s)	16, 556, 861
VpaK11BI	GGWCC	2 cut(s)	381, 569
XapI	RAATTY	4 cut(s)	663, 884, 913, 1005
XceI	RCATGY	1 cut(s)	319
XcmI	CCANNNNNNNNNTGG	3 cut(s)	13, 268, 858
XspI	CTAG	4 cut(s)	459, 788, 893, 1129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.