Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006485

Physical Location & Seq

Genomic Coordinates Reverse (-)

53664128 .. 53666223

Gene Structure 2096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG455100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGACCAACCAAAATGTGCTTATTTCCGATGTCAAAGGCGTGGCTGTGGCTGTTGCTGCCATGAAGAATCAGTCTGTGTTCTCTTCATCGGTGGCGAATTCCATGATTGAATCAGGAGGAGGAGGCGGGTGTAATTTCACCATTCCCAGGAGTATTAAGCTCTTGAAGGTTGAGACTGCAGAGGTTGGTGGTGGAGCTGCCCGAGTCAATGCTTGGGTGGACTCATTGAGAGCTTCGTCACCGCCGCGTGTTAAATCCACCACCACTGCCCCCTCCACTCTTTCTCAAACTGGGGATGAAGAAAACTCTTGGAATCTTCGTCACCCATCAGCTATGAGCATGTTTGAGCAGATCACAAATGCTTCAAAGGGGAAGCAGATTATCATGTTTCTTGACTACGATGGTACTCTTTCACCCATTGTTGAAGACCCAGACAGAGCATTCATGTCCAATGAGATGAGAAAAGCTGTGAGGGCAGTTGCTAGATATTTTCCTACAGCCATAGTTAGTGGGAGGTGCAGAGACAAGGTTTATAGCTTTGTGAAATTATCAGAGCTTTATTACGCAGGAAGCCATGGGATGGACATTAGAGGACCATCCAAAAGTAACAAGTACAAGAATGCTAATCAAGCAGTTCTCTTCCAACCAGCCAATGAATTTTTACCCATGATTGATGAGGTGTGCAAAATTCTAGTGGAGAAAACCAAATCCATCTCAGGAGCTAGGGTGGAAAATAATAAGTTTTGTTTATCTGTACACTTCCGTTGTGTTGAGGAGAAGGTAAACATCAATTCCCACTTTTCTTTTATCTTCCATATTTTTGTTTTGGTATGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004805 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0015927 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016798 GO:0019203 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

279

Amino Acids

30.64

Weight (kDa)

9.1

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	130 - 260	4.7e-40	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35910
fragaria_vesca	FvH4_3g04100 FvH4_3g04100 FvH4_3g04100 FvH4_3g04100 FvH4_5g37780 FvH4_5g37780 FvH4_5g37780 FvH4_5g37780
malus_domestica	MD08G1180400.v1.1 MD15G1365900.v1.1
prunus_persica	Prupe.1G513800_v2.0.a1
pyrus_communis	pycom08g15440 pycom15g32820
rosa_chinensis	RchiOBHm_Chr7g0239531
rosa_laevigata	RLG00000000747
rosa_multiflora	Rmu_sc0003379.1_g000024
rosa_roxburghii	Rroxscaffold_3G00220860
rosa_rugosa	Rorug07G0328400 Rorug07G0328400
rosa_samantha	Rh7AG482300 Rh7BG286700 Rh7BG455100 Rh7CG500000 Rh7DG468200
rosa_wichuraiana	Rw7G040390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	580
AccII	CGCG	1 cut(s)	247
AciI	CCGC	3 cut(s)	126, 242, 245
AcsI	RAATTY	3 cut(s)	97, 656, 687
AfaI	GTAC	3 cut(s)	406, 614, 756
AfiI	CCNNNNNNNGG	2 cut(s)	147, 580
AgsI	TTSAA	4 cut(s)	110, 166, 366, 425
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	8 cut(s)	160, 197, 233, 332, 467, 537, 556, 722
AluI	AGCT	8 cut(s)	160, 197, 233, 332, 467, 537, 556, 722
Alw26I	GTCTC	2 cut(s)	167, 516
Ama87I	CYCGRG	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	56, 197
ApoI	RAATTY	3 cut(s)	97, 656, 687
AspS9I	GGNCC	1 cut(s)	593
AsuHPI	GGTGA	4 cut(s)	130, 231, 314, 405
AvaI	CYCGRG	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	432
BbvI	GCAGC	2 cut(s)	43, 184
BccI	CCATC	5 cut(s)	334, 395, 574, 604, 719
BciT130I	CCWGG	1 cut(s)	148
BcoDI	GTCTC	2 cut(s)	167, 516
BfaI	CTAG	3 cut(s)	483, 692, 723
BfmI	CTRYAG	2 cut(s)	177, 495
BisI	GCNGC	3 cut(s)	57, 198, 245
BlsI	GCNGC	3 cut(s)	58, 199, 246
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	593
BmeT110I	CYCGRG	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	593
BmrFI	CCNGG	1 cut(s)	148
BmrI	ACTGGG	1 cut(s)	300
BmuI	ACTGGG	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	432
BsaJI	CCNNGG	2 cut(s)	146, 574
BsaXI	ACNNNNNCTCC	2 cut(s)	711, 741
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 580
Bse1I	ACTGG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	146, 574
BseGI	GGATG	3 cut(s)	301, 585, 596
BseLI	CCNNNNNNNGG	2 cut(s)	147, 580
BseMII	CTCAG	1 cut(s)	729
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	3 cut(s)	132, 135, 788
BseXI	GCAGC	2 cut(s)	43, 184
BsgI	GTGCAG	1 cut(s)	538
Bsh1236I	CGCG	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	201
BslI	CCNNNNNNNGG	2 cut(s)	147, 580
BsmAI	GTCTC	2 cut(s)	167, 516
BsmI	GAATGC	2 cut(s)	440, 625
BsoBI	CYCGRG	1 cut(s)	201
Bsp1407I	TGTACA	1 cut(s)	754
Bsp143I	GATC	1 cut(s)	351
Bsp19I	CCATGG	1 cut(s)	574
BspACI	CCGC	3 cut(s)	126, 242, 245
BspCNI	CTCAG	1 cut(s)	728
BspFNI	CGCG	1 cut(s)	247
BspMAI	CTGCAG	1 cut(s)	181
BsrGI	TGTACA	1 cut(s)	754
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	2 cut(s)	146, 574
BssMI	GATC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	574
Bst2UI	CCWGG	1 cut(s)	148
Bst6I	CTCTTC	2 cut(s)	88, 644
BstAUI	TGTACA	1 cut(s)	754
BstDEI	CTNAG	1 cut(s)	715
BstDSI	CCRYGG	1 cut(s)	574
BstF5I	GGATG	3 cut(s)	301, 585, 596
BstFNI	CGCG	1 cut(s)	247
BstKTI	GATC	1 cut(s)	354
BstMAI	GTCTC	2 cut(s)	167, 516
BstMBI	GATC	1 cut(s)	351
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 473, 629
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	146
BstSFI	CTRYAG	2 cut(s)	177, 495
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	43, 184
BstV2I	GAAGAC	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	574
BtsCI	GGATG	3 cut(s)	301, 585, 596
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	593
Csp6I	GTAC	3 cut(s)	405, 613, 755
CviAII	CATG	7 cut(s)	61, 103, 340, 385, 445, 575, 667
CviQI	GTAC	3 cut(s)	405, 613, 755
DdeI	CTNAG	1 cut(s)	715
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
Eam1104I	CTCTTC	2 cut(s)	88, 644
EarI	CTCTTC	2 cut(s)	88, 644
Eco130I	CCWWGG	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	593
Eco88I	CYCGRG	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	574
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	7 cut(s)	64, 106, 343, 388, 448, 578, 670
FatI	CATG	7 cut(s)	60, 102, 339, 384, 444, 574, 666
FauI	CCCGC	1 cut(s)	119
Fnu4HI	GCNGC	3 cut(s)	57, 198, 245
FokI	GGATG	3 cut(s)	308, 583, 592
Fsp4HI	GCNGC	3 cut(s)	57, 198, 245
FspBI	CTAG	3 cut(s)	483, 692, 723
GluI	GCNGC	3 cut(s)	57, 198, 245
Hin1II	CATG	7 cut(s)	64, 106, 343, 388, 448, 578, 670
HinfI	GANTC	5 cut(s)	67, 110, 204, 221, 313
HphI	GGTGA	4 cut(s)	130, 231, 314, 405
Hpy166II	GTNNAC	3 cut(s)	220, 757, 784
Hpy188I	TCNGA	2 cut(s)	28, 553
Hpy188III	TCNNGA	4 cut(s)	114, 163, 392, 717
Hpy8I	GTNNAC	3 cut(s)	220, 757, 784
HpyAV	CCTTC	2 cut(s)	160, 772
HpyCH4V	TGCA	3 cut(s)	179, 519, 684
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 473, 629
HpyF3I	CTNAG	1 cut(s)	715
Hsp92II	CATG	7 cut(s)	64, 106, 343, 388, 448, 578, 670
Kzo9I	GATC	1 cut(s)	351
LmnI	GCTCC	2 cut(s)	194, 719
LpnPI	CCDG	8 cut(s)	99, 133, 160, 276, 444, 552, 660, 702
Lsp1109I	GCAGC	2 cut(s)	43, 184
MaeI	CTAG	3 cut(s)	483, 692, 723
MaeIII	GTNAC	3 cut(s)	237, 320, 605
MalI	GATC	1 cut(s)	353
MboI	GATC	1 cut(s)	351
MboII	GAAGA	7 cut(s)	75, 76, 308, 311, 437, 631, 802
MluCI	AATT	6 cut(s)	97, 133, 545, 656, 687, 790
MlyI	GAGTC	2 cut(s)	213, 215
MmeI	TCCRAC	1 cut(s)	667
MseI	TTAA	2 cut(s)	156, 252
MspR9I	CCNGG	1 cut(s)	148
Mva1269I	GAATGC	2 cut(s)	440, 625
MvaI	CCWGG	1 cut(s)	148
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	3 cut(s)	56, 473, 629
NcoI	CCATGG	1 cut(s)	574
NdeII	GATC	1 cut(s)	351
NlaIII	CATG	7 cut(s)	64, 106, 343, 388, 448, 578, 670
NmuCI	GTSAC	2 cut(s)	237, 320
NspI	RCATGY	1 cut(s)	343
PctI	GAATGC	2 cut(s)	440, 625
PfeI	GAWTC	3 cut(s)	67, 110, 313
PflMI	CCANNNNNTGG	1 cut(s)	580
PkrI	GCNGC	3 cut(s)	58, 199, 246
PleI	GAGTC	2 cut(s)	212, 215
PpsI	GAGTC	2 cut(s)	212, 215
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	593
PstI	CTGCAG	1 cut(s)	181
RsaI	GTAC	3 cut(s)	406, 614, 756
RsaNI	GTAC	3 cut(s)	405, 613, 755
SaqAI	TTAA	2 cut(s)	156, 252
SatI	GCNGC	3 cut(s)	57, 198, 245
Sau3AI	GATC	1 cut(s)	351
Sau96I	GGNCC	1 cut(s)	593
SchI	GAGTC	2 cut(s)	213, 215
ScrFI	CCNGG	1 cut(s)	148
SfcI	CTRYAG	2 cut(s)	177, 495
SinI	GGWCC	1 cut(s)	593
Sse9I	AATT	6 cut(s)	97, 133, 545, 656, 687, 790
SsiI	CCGC	3 cut(s)	126, 242, 245
SspMI	CTAG	3 cut(s)	483, 692, 723
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	574
TasI	AATT	6 cut(s)	97, 133, 545, 656, 687, 790
TatI	WGTACW	2 cut(s)	612, 754
TauI	GCSGC	1 cut(s)	247
TfiI	GAWTC	3 cut(s)	67, 110, 313
Tru1I	TTAA	2 cut(s)	156, 252
Tru9I	TTAA	2 cut(s)	156, 252
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	2 cut(s)	237, 320
TseI	GCWGC	2 cut(s)	56, 197
Tsp45I	GTSAC	2 cut(s)	237, 320
TspDTI	ATGAA	5 cut(s)	75, 77, 312, 433, 669
TspGWI	ACGGA	1 cut(s)	752
TspRI	CASTG	1 cut(s)	271
Van91I	CCANNNNNTGG	1 cut(s)	580
VpaK11BI	GGWCC	1 cut(s)	593
XapI	RAATTY	3 cut(s)	97, 656, 687
XceI	RCATGY	1 cut(s)	343
XspI	CTAG	3 cut(s)	483, 692, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.