Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006485

Physical Location & Seq

Genomic Coordinates Forward (+)

4816677 .. 4820287

Gene Structure 3611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000747

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGACCAACCAAAATGTGCTTATTTCCGATGTCAAAGGCGTGGCCGTGGCTGTGGCTGCCATGAAGAATCAGTCTGTGTTCTCTTCATCGGTGGCGAATTCCATGATTGAATCAGGAGGAGGAGGAGGGTGTAAATTCACCATTCCCAGGAGTATTAAGCTCTTGCGGGTTGAGACTGCAGAGGTTGGTGGTGGTGGTGGTGGTGGTGGAGCTGCCCGAGTCAATGCTTGGGTGGACTCATTGAGAGCTTCGTCACCGCCGCGTGTTAAATCCACCACCACTGCCCCCTCCACCCTTTCTCAAACTGGGGATGAAGAAAACTCTTGGAATCTTCGTCATCCATCTGCTATGGGCATGTTTGAGCAGATCACAAATGCTTCAAAGGGGAAGCAGATTATCATGTTTCTTGACTACGACGGTACTCTTTCACCCATTGTTGAAGACCCAGACAGAGCATTCATGTCCAATGAGATGAGAAAAGCTGTGAGGGCAGTTGCTAGATATTTTCCTACAGCCATAGTTAGTGGGAGGTGCAGAGACAAGGTTTATAGCTTTGTGAAATTATCAGAGCTTTATTACGCAGGAAGCCATGGGATGGACATTAGAGGACCATCCAAAAGTAACAAGTACAAGAATGCTAATCAAGCAGTTCTCTTCCAACCAGCCAATGAATTTTTACCCATGATTGATGAGGTGTGCAAAATTCTAGTGGAGAAAACCAAATCCATCTCAGGAGCTAGGGTGGAAAATAATAAGTTTTGTTTATCTGTACACTTCCGTTGTGTTGAGGAGAAGAGTTGGGCTGCTCTGGCAGAGCAAGTTAGATTGGTGCTAAATGAGTATCCAAAGCTGAAGCTGACTCAAGGGAGAAAGGTCTTAGAGATTAGGCCAACAATCAAATGGGACAAGGGCAAAGCACTTGAATTCTTGCTAGAGTCATTAGGATATGCCAACTCAAGTGAAGTATTACCGGTCTATATCGGAGATGATAGAACAGATGAGGATGCTTTCAAGGTTTTAAGCGATAGAGGACAAGGATTTGGAATTCTTGTTTCTAAAGTTCCAAAAGAAACAAATGCTTCTTATTCCTTGCAAGAACCAGCAGAGGTCAAGGACTTTTTGCGACGTTTAGTGAAGTGGAAAAGATTGACGTTGCAACAACGAAAAATACACTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004805 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0015927 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016798 GO:0019203 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

393

Amino Acids

43.23

Weight (kDa)

9.41

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	135 - 367	6.6e-75	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35910
fragaria_vesca	FvH4_3g04100 FvH4_3g04100 FvH4_3g04100 FvH4_3g04100 FvH4_5g37780 FvH4_5g37780 FvH4_5g37780 FvH4_5g37780
malus_domestica	MD08G1180400.v1.1 MD15G1365900.v1.1
prunus_persica	Prupe.1G513800_v2.0.a1
pyrus_communis	pycom08g15440 pycom15g32820
rosa_chinensis	RchiOBHm_Chr7g0239531
rosa_laevigata	RLG00000000747
rosa_multiflora	Rmu_sc0003379.1_g000024
rosa_roxburghii	Rroxscaffold_3G00220860
rosa_rugosa	Rorug07G0328400 Rorug07G0328400
rosa_samantha	Rh7AG482300 Rh7BG286700 Rh7BG455100 Rh7CG500000 Rh7DG468200
rosa_wichuraiana	Rw7G040390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	595
AccII	CGCG	1 cut(s)	262
AciI	CCGC	3 cut(s)	166, 257, 260
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	6 cut(s)	97, 134, 671, 702, 923, 1044
AcuI	CTGAAG	1 cut(s)	872
AfaI	GTAC	3 cut(s)	421, 629, 771
AfiI	CCNNNNNNNGG	2 cut(s)	147, 595
AgeI	ACCGGT	1 cut(s)	970
AgsI	TTSAA	5 cut(s)	110, 381, 440, 923, 1012
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	9 cut(s)	160, 212, 248, 482, 552, 571, 737, 850, 856
AluI	AGCT	9 cut(s)	160, 212, 248, 482, 552, 571, 737, 850, 856
Alw26I	GTCTC	2 cut(s)	167, 531
Ama87I	CYCGRG	1 cut(s)	216
AoxI	GGCC	2 cut(s)	42, 887
ApeKI	GCWGC	3 cut(s)	56, 212, 803
ApoI	RAATTY	6 cut(s)	97, 134, 671, 702, 923, 1044
AsiGI	ACCGGT	1 cut(s)	970
AspS9I	GGNCC	1 cut(s)	608
AsuHPI	GGTGA	3 cut(s)	130, 246, 420
AvaI	CYCGRG	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	608
BbsI	GAAGAC	1 cut(s)	447
BbvI	GCAGC	3 cut(s)	43, 199, 790
BccI	CCATC	4 cut(s)	349, 589, 619, 734
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	148
BciVI	GTATCC	1 cut(s)	852
BcoDI	GTCTC	2 cut(s)	167, 531
BfaI	CTAG	4 cut(s)	498, 707, 738, 932
BfmI	CTRYAG	2 cut(s)	177, 510
BfuI	GTATCC	1 cut(s)	852
BisI	GCNGC	4 cut(s)	57, 213, 260, 804
BlsI	GCNGC	4 cut(s)	58, 214, 261, 805
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	608
BmeT110I	CYCGRG	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	608
BmrFI	CCNGG	1 cut(s)	148
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	994
BmuI	ACTGGG	1 cut(s)	315
BpiI	GAAGAC	1 cut(s)	447
BpuEI	CTTGAG	2 cut(s)	846, 940
BsaJI	CCNNGG	3 cut(s)	45, 146, 589
BsaWI	WCCGGW	1 cut(s)	970
BsaXI	ACNNNNNCTCC	2 cut(s)	726, 756
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 595
Bse118I	RCCGGY	1 cut(s)	970
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	3 cut(s)	45, 146, 589
BseGI	GGATG	5 cut(s)	316, 337, 600, 611, 1009
BseLI	CCNNNNNNNGG	2 cut(s)	147, 595
BseMII	CTCAG	1 cut(s)	744
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	4 cut(s)	132, 135, 138, 803
BseXI	GCAGC	3 cut(s)	43, 199, 790
BsgI	GTGCAG	1 cut(s)	553
Bsh1236I	CGCG	1 cut(s)	262
BshFI	GGCC	2 cut(s)	44, 889
BshTI	ACCGGT	1 cut(s)	970
BsiHKCI	CYCGRG	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	971
BslFI	GGGAC	1 cut(s)	917
BslI	CCNNNNNNNGG	2 cut(s)	147, 595
BsmAI	GTCTC	2 cut(s)	167, 531
BsmFI	GGGAC	1 cut(s)	917
BsmI	GAATGC	2 cut(s)	455, 640
BsnI	GGCC	2 cut(s)	44, 889
BsoBI	CYCGRG	1 cut(s)	216
Bsp1407I	TGTACA	1 cut(s)	769
Bsp143I	GATC	1 cut(s)	366
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	3 cut(s)	166, 257, 260
BspANI	GGCC	2 cut(s)	44, 889
BspCNI	CTCAG	1 cut(s)	743
BspFNI	CGCG	1 cut(s)	262
BspMAI	CTGCAG	1 cut(s)	181
BsrFI	RCCGGY	1 cut(s)	970
BsrGI	TGTACA	1 cut(s)	769
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	970
BssECI	CCNNGG	3 cut(s)	45, 146, 589
BssMI	GATC	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	589
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	419
Bst6I	CTCTTC	3 cut(s)	88, 659, 788
BstAUI	TGTACA	1 cut(s)	769
BstDEI	CTNAG	2 cut(s)	730, 877
BstDSI	CCRYGG	2 cut(s)	45, 589
BstF5I	GGATG	5 cut(s)	316, 337, 600, 611, 1009
BstFNI	CGCG	1 cut(s)	262
BstKTI	GATC	1 cut(s)	369
BstMAI	GTCTC	2 cut(s)	167, 531
BstMBI	GATC	1 cut(s)	366
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 488, 644, 809
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	146
BstSFI	CTRYAG	2 cut(s)	177, 510
BstUI	CGCG	1 cut(s)	262
BstV1I	GCAGC	3 cut(s)	43, 199, 790
BstV2I	GAAGAC	1 cut(s)	447
BsuI	GTATCC	1 cut(s)	852
BsuRI	GGCC	2 cut(s)	44, 889
BtgI	CCRYGG	2 cut(s)	45, 589
BtsCI	GGATG	5 cut(s)	316, 337, 600, 611, 1009
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
Cfr10I	RCCGGY	1 cut(s)	970
Cfr13I	GGNCC	1 cut(s)	608
Csp6I	GTAC	3 cut(s)	420, 628, 770
CspAI	ACCGGT	1 cut(s)	970
CviAII	CATG	7 cut(s)	61, 103, 355, 400, 460, 590, 682
CviQI	GTAC	3 cut(s)	420, 628, 770
DdeI	CTNAG	2 cut(s)	730, 877
DpnI	GATC	1 cut(s)	368
DpnII	GATC	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	3 cut(s)	88, 659, 788
EarI	CTCTTC	3 cut(s)	88, 659, 788
Eco130I	CCWWGG	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	608
Eco57I	CTGAAG	1 cut(s)	872
Eco88I	CYCGRG	1 cut(s)	216
EcoRI	GAATTC	3 cut(s)	97, 923, 1044
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	589
FaeI	CATG	7 cut(s)	64, 106, 358, 403, 463, 593, 685
FaqI	GGGAC	1 cut(s)	917
FatI	CATG	7 cut(s)	60, 102, 354, 399, 459, 589, 681
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	4 cut(s)	57, 213, 260, 804
FokI	GGATG	5 cut(s)	323, 324, 598, 607, 1016
Fsp4HI	GCNGC	4 cut(s)	57, 213, 260, 804
FspBI	CTAG	4 cut(s)	498, 707, 738, 932
GluI	GCNGC	4 cut(s)	57, 213, 260, 804
HaeIII	GGCC	2 cut(s)	44, 889
HapII	CCGG	1 cut(s)	971
Hin1II	CATG	7 cut(s)	64, 106, 358, 403, 463, 593, 685
HinfI	GANTC	7 cut(s)	67, 110, 219, 236, 328, 859, 935
HpaII	CCGG	1 cut(s)	971
HphI	GGTGA	3 cut(s)	130, 246, 420
Hpy166II	GTNNAC	2 cut(s)	235, 772
Hpy188I	TCNGA	3 cut(s)	28, 568, 983
Hpy188III	TCNNGA	3 cut(s)	114, 407, 732
Hpy8I	GTNNAC	2 cut(s)	235, 772
Hpy99I	CGWCG	2 cut(s)	419, 1128
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4IV	ACGT	2 cut(s)	1126, 1151
HpyCH4V	TGCA	5 cut(s)	179, 534, 699, 1093, 1156
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 488, 644, 809
HpyF3I	CTNAG	2 cut(s)	730, 877
HpySE526I	ACGT	2 cut(s)	1126, 1151
Hsp92II	CATG	7 cut(s)	64, 106, 358, 403, 463, 593, 685
Kzo9I	GATC	1 cut(s)	366
LmnI	GCTCC	2 cut(s)	209, 734
Lsp1109I	GCAGC	3 cut(s)	43, 199, 790
LweI	GCATC	1 cut(s)	994
MaeI	CTAG	4 cut(s)	498, 707, 738, 932
MaeII	ACGT	2 cut(s)	1126, 1151
MaeIII	GTNAC	2 cut(s)	252, 620
MalI	GATC	1 cut(s)	368
MboI	GATC	1 cut(s)	366
MboII	GAAGA	7 cut(s)	75, 76, 323, 326, 452, 646, 805
MluCI	AATT	7 cut(s)	97, 134, 560, 671, 702, 923, 1044
MlyI	GAGTC	4 cut(s)	228, 230, 853, 944
MmeI	TCCRAC	1 cut(s)	682
MseI	TTAA	3 cut(s)	156, 267, 1019
MspI	CCGG	1 cut(s)	971
MspR9I	CCNGG	1 cut(s)	148
Mva1269I	GAATGC	2 cut(s)	455, 640
MvaI	CCWGG	1 cut(s)	148
MvnI	CGCG	1 cut(s)	262
MwoI	GCNNNNNNNGC	4 cut(s)	56, 488, 644, 809
NcoI	CCATGG	1 cut(s)	589
NdeII	GATC	1 cut(s)	366
NlaIII	CATG	7 cut(s)	64, 106, 358, 403, 463, 593, 685
NmuCI	GTSAC	1 cut(s)	252
NspI	RCATGY	1 cut(s)	358
PctI	GAATGC	2 cut(s)	455, 640
PfeI	GAWTC	3 cut(s)	67, 110, 328
PflMI	CCANNNNNTGG	1 cut(s)	595
PinAI	ACCGGT	1 cut(s)	970
PkrI	GCNGC	4 cut(s)	58, 214, 261, 805
PleI	GAGTC	4 cut(s)	227, 230, 853, 943
PpsI	GAGTC	4 cut(s)	227, 230, 853, 943
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	608
PstI	CTGCAG	1 cut(s)	181
RsaI	GTAC	3 cut(s)	421, 629, 771
RsaNI	GTAC	3 cut(s)	420, 628, 770
SaqAI	TTAA	3 cut(s)	156, 267, 1019
SatI	GCNGC	4 cut(s)	57, 213, 260, 804
Sau3AI	GATC	1 cut(s)	366
Sau96I	GGNCC	1 cut(s)	608
SchI	GAGTC	4 cut(s)	228, 230, 853, 944
ScrFI	CCNGG	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	994
SfcI	CTRYAG	2 cut(s)	177, 510
SinI	GGWCC	1 cut(s)	608
SmlI	CTYRAG	2 cut(s)	861, 955
SmoI	CTYRAG	2 cut(s)	861, 955
Sse9I	AATT	7 cut(s)	97, 134, 560, 671, 702, 923, 1044
SsiI	CCGC	3 cut(s)	166, 257, 260
SspMI	CTAG	4 cut(s)	498, 707, 738, 932
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	1 cut(s)	419
TaiI	ACGT	2 cut(s)	1129, 1154
TasI	AATT	7 cut(s)	97, 134, 560, 671, 702, 923, 1044
TatI	WGTACW	2 cut(s)	627, 769
TauI	GCSGC	1 cut(s)	262
TfiI	GAWTC	3 cut(s)	67, 110, 328
Tru1I	TTAA	3 cut(s)	156, 267, 1019
Tru9I	TTAA	3 cut(s)	156, 267, 1019
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	252
TseI	GCWGC	3 cut(s)	56, 212, 803
Tsp45I	GTSAC	1 cut(s)	252
TspDTI	ATGAA	5 cut(s)	75, 77, 327, 448, 684
TspGWI	ACGGA	1 cut(s)	767
TspRI	CASTG	1 cut(s)	286
Van91I	CCANNNNNTGG	1 cut(s)	595
VpaK11BI	GGWCC	1 cut(s)	608
XapI	RAATTY	6 cut(s)	97, 134, 671, 702, 923, 1044
XceI	RCATGY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	897
XspI	CTAG	4 cut(s)	498, 707, 738, 932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.