Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006485

Physical Location & Seq

Genomic Coordinates Forward (+)

32060928 .. 32064114

Gene Structure 3187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g32820.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGATCAAAGCCGACTCGACTGCGCGTGTGGTTCGATTCTCGACTTCTTCTCTCTTTCCCTCAGGTTTTTTGTTTCTATTTAAACCCTCCCACCCTGCCTTCTGTTTCATCATCTCCCAAACAACCCACAAACCTCCTCTGTTCTTCTCTTCCTCTGTTTTTTCTCTTCCTCAAATTCTTCGAAACCTTCGAGGCAGAAAAATGACCAACCAAAATGTGGTTGTTTCTGATGCCAAAGGCGTGGCTATTACAGTCACGGTTGCTGCAAAGCAGAATATGTTTTCACAATCGGTGCCAAAACCGATGACTGAGGCAGGAAGAGGAGGAGGATGCTTCACCATTCCCATGAACATCAAGGTTTTGAATGTTGACAAAGAAGGGGGAGCAGCCCGAGTCAATGCTTGGGTTGACTCCTTGAGAGCTTCTTCTCCGCCTCGTGTCAAATCCGCTGCCACTCCTCAGTCTCTTTCTGAAACAGTGGATAATAACTCTTGGAGTAGTCGCCATCCATCAGCTATGAGCATGTTCGAGCAGATAACAAATGCTTCAAAGGGCAAGCAGATTGTATTGTTTCTTGACTACGATGGCACCCTCTCCCCAATTGTGGAAGACCCAGATCGTGCTTTCATGTCCAATGAGATGAGAAAGGCAGTGAAGGCCGCTGCTAGATACTTTCCTACAGCAATTGTTAGCGGGAGGTGCAGAGACAAGGTTTACAGCTTTGTAAAATTAGGAGAGCTTTATTATGCAGGCAGCCATGGGATGGACATCAAGGGACCATCCAAAAGTAGCAAATATAAGAATGGTAATCAAGCAGTTCTCTTCCAACCGGCCAGTGAGTTTGTACCAATGATTGATGAGGTGTACAAAATTTTGTTGGAGAAAACCAGATCCATCTCAGGAGCTAGGGTGGAAAATAATAAGTTTTGCTTATCTGTACACTTCCGTTGTGTTGATGAGAAGAGTTGGGCAGCTTTGGCAGAGCAAGTTAGACTTGTTCTCAATGAGTATCCGAAGCTCAGGTTGACTCAAGGGAGGAAGGTATTAGAGATCCGCCCAACCATCAAATGGGACAAAGGCAAAGCTCTTGAATTCCTGCTAGAGTCATTAGGATATGCGAACTCAAACGAAGTACTACCAGTCTATATTGGAGATGATCGAACAGACGAGGACGCCTTCAAGGTGCTACGCGATAGAGGACAAGGATTTGGTATTCTAGTTTCTAAAGTTCCAAAAGAAACAAATGCGTCTTACACTTTACAAGAACCAGCGGAGGTTAAGGATTTTTTGCGGCGTTTGGTGAAATGGAAAACCAGCAAACTAACTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004805 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0015927 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016798 GO:0019203 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

444

Amino Acids

49.31

Weight (kDa)

9.7

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35910
fragaria_vesca	FvH4_3g04100 FvH4_3g04100 FvH4_3g04100 FvH4_3g04100 FvH4_5g37780 FvH4_5g37780 FvH4_5g37780 FvH4_5g37780
malus_domestica	MD08G1180400.v1.1 MD15G1365900.v1.1
prunus_persica	Prupe.1G513800_v2.0.a1
pyrus_communis	pycom08g15440 pycom15g32820
rosa_chinensis	RchiOBHm_Chr7g0239531
rosa_laevigata	RLG00000000747
rosa_multiflora	Rmu_sc0003379.1_g000024
rosa_roxburghii	Rroxscaffold_3G00220860
rosa_rugosa	Rorug07G0328400 Rorug07G0328400
rosa_samantha	Rh7AG482300 Rh7BG286700 Rh7BG455100 Rh7CG500000 Rh7DG468200
rosa_wichuraiana	Rw7G040390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	292, 587
AccB7I	CCANNNNNTGG	3 cut(s)	217, 763, 1068
AccII	CGCG	2 cut(s)	25, 1191
AciI	CCGC	7 cut(s)	431, 447, 660, 693, 1054, 1271, 1291
AclWI	GGATC	2 cut(s)	885, 1045
AcoI	YGGCCR	1 cut(s)	831
AcsI	RAATTY	3 cut(s)	174, 870, 1091
AcyI	GRCGYC	1 cut(s)	1173
AfaI	GTAC	4 cut(s)	846, 866, 939, 1134
AfiI	CCNNNNNNNGG	4 cut(s)	217, 604, 763, 1068
AgsI	TTSAA	4 cut(s)	364, 549, 1091, 1180
AluBI	AGCT	9 cut(s)	422, 515, 720, 739, 905, 974, 1018, 1085, 1329
AluI	AGCT	9 cut(s)	422, 515, 720, 739, 905, 974, 1018, 1085, 1329
Alw26I	GTCTC	2 cut(s)	468, 699
AlwI	GGATC	2 cut(s)	885, 1045
Ama87I	CYCGRG	1 cut(s)	390
AoxI	GGCC	2 cut(s)	657, 831
ApeKI	GCWGC	6 cut(s)	263, 386, 449, 662, 753, 971
ApoI	RAATTY	3 cut(s)	174, 870, 1091
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	776
AsuHPI	GGTGA	2 cut(s)	328, 1312
AsuII	TTCGAA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	390
AvaII	GGWCC	1 cut(s)	776
AxyI	CCTNAGG	1 cut(s)	61
BanI	GGYRCC	2 cut(s)	292, 587
BauI	CACGAG	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	615
BbvI	GCAGC	6 cut(s)	250, 398, 436, 649, 765, 983
BccI	CCATC	7 cut(s)	513, 517, 578, 757, 787, 902, 1070
BcgI	CGANNNNNNTGC	1 cut(s)	36
BciVI	GTATCC	1 cut(s)	1020
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	468, 699
BfaI	CTAG	6 cut(s)	666, 906, 1100, 1217, 1326, 1330
BfmI	CTRYAG	1 cut(s)	678
BfuI	GTATCC	1 cut(s)	1020
BisI	GCNGC	8 cut(s)	264, 387, 450, 660, 663, 754, 972, 1292
BlsI	GCNGC	8 cut(s)	265, 388, 451, 661, 664, 755, 973, 1293
BmcAI	AGTACT	1 cut(s)	1134
Bme18I	GGWCC	1 cut(s)	776
BmeT110I	CYCGRG	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	776
BmiI	GGNNCC	3 cut(s)	294, 589, 777
BmsI	GCATC	2 cut(s)	220, 320
BpiI	GAAGAC	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	1019
Bpu14I	TTCGAA	1 cut(s)	181
BpuEI	CTTGAG	2 cut(s)	436, 1014
BsaBI	GATNNNNATC	1 cut(s)	767
BsaHI	GRCGYC	1 cut(s)	1173
BsaJI	CCNNGG	1 cut(s)	757
BsaXI	ACNNNNNCTCC	2 cut(s)	894, 924
Bsc4I	CCNNNNNNNGG	4 cut(s)	217, 604, 763, 1068
Bse118I	RCCGGY	1 cut(s)	829
Bse1I	ACTGG	2 cut(s)	834, 1139
Bse21I	CCTNAGG	1 cut(s)	61
Bse8I	GATNNNNATC	1 cut(s)	767
BseDI	CCNNGG	1 cut(s)	757
BseGI	GGATG	4 cut(s)	335, 505, 768, 779
BseJI	GATNNNNATC	1 cut(s)	767
BseLI	CCNNNNNNNGG	4 cut(s)	217, 604, 763, 1068
BseMII	CTCAG	5 cut(s)	75, 300, 473, 912, 1033
BseNI	ACTGG	2 cut(s)	834, 1139
BseRI	GAGGAG	4 cut(s)	126, 336, 339, 447
BseXI	GCAGC	6 cut(s)	250, 398, 436, 649, 765, 983
BsgI	GTGCAG	1 cut(s)	721
Bsh1236I	CGCG	2 cut(s)	25, 1191
BshFI	GGCC	2 cut(s)	659, 833
BshNI	GGYRCC	2 cut(s)	292, 587
BsiHKCI	CYCGRG	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	830
BslFI	GGGAC	2 cut(s)	789, 1085
BslI	CCNNNNNNNGG	4 cut(s)	217, 604, 763, 1068
BsmAI	GTCTC	2 cut(s)	468, 699
BsmFI	GGGAC	2 cut(s)	789, 1085
BsnI	GGCC	2 cut(s)	659, 833
BsoBI	CYCGRG	1 cut(s)	390
Bsp119I	TTCGAA	1 cut(s)	181
Bsp1407I	TGTACA	2 cut(s)	864, 937
Bsp143I	GATC	5 cut(s)	3, 616, 890, 1050, 1156
Bsp19I	CCATGG	1 cut(s)	757
BspACI	CCGC	7 cut(s)	431, 447, 660, 693, 1054, 1271, 1291
BspANI	GGCC	2 cut(s)	659, 833
BspCNI	CTCAG	5 cut(s)	74, 301, 472, 911, 1032
BspFNI	CGCG	2 cut(s)	25, 1191
BspLI	GGNNCC	3 cut(s)	294, 589, 777
BspPI	GGATC	2 cut(s)	885, 1045
BspT104I	TTCGAA	1 cut(s)	181
BspT107I	GGYRCC	2 cut(s)	292, 587
BsrFI	RCCGGY	1 cut(s)	829
BsrGI	TGTACA	2 cut(s)	864, 937
BsrI	ACTGG	2 cut(s)	834, 1139
BssAI	RCCGGY	1 cut(s)	829
BssECI	CCNNGG	1 cut(s)	757
BssMI	GATC	5 cut(s)	3, 616, 890, 1050, 1156
BssNI	GRCGYC	1 cut(s)	1173
BssSI	CACGAG	1 cut(s)	435
BssT1I	CCWWGG	1 cut(s)	757
Bst2BI	CACGAG	1 cut(s)	435
Bst4CI	ACNGT	3 cut(s)	253, 259, 478
Bst6I	CTCTTC	5 cut(s)	154, 171, 313, 827, 956
BstACI	GRCGYC	1 cut(s)	1173
BstAUI	TGTACA	2 cut(s)	864, 937
BstBI	TTCGAA	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	557, 751
BstDEI	CTNAG	5 cut(s)	61, 309, 459, 898, 1019
BstDSI	CCRYGG	1 cut(s)	757
BstF5I	GGATG	4 cut(s)	335, 505, 768, 779
BstFNI	CGCG	2 cut(s)	25, 1191
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	5 cut(s)	6, 619, 893, 1053, 1159
BstMAI	GTCTC	2 cut(s)	468, 699
BstMBI	GATC	5 cut(s)	3, 616, 890, 1050, 1156
BstMWI	GCNNNNNNNGC	3 cut(s)	656, 699, 977
BstNSI	RCATGY	1 cut(s)	526
BstSFI	CTRYAG	1 cut(s)	678
BstUI	CGCG	2 cut(s)	25, 1191
BstV1I	GCAGC	6 cut(s)	250, 398, 436, 649, 765, 983
BstV2I	GAAGAC	1 cut(s)	615
BstX2I	RGATCY	2 cut(s)	890, 1050
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	2 cut(s)	890, 1050
Bsu36I	CCTNAGG	1 cut(s)	61
BsuI	GTATCC	1 cut(s)	1020
BsuRI	GGCC	2 cut(s)	659, 833
BtgI	CCRYGG	1 cut(s)	757
BtsCI	GGATG	4 cut(s)	335, 505, 768, 779
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	3 cut(s)	483, 657, 841
Cac8I	GCNNGC	2 cut(s)	557, 751
CfoI	GCGC	1 cut(s)	25
Cfr10I	RCCGGY	1 cut(s)	829
Cfr13I	GGNCC	1 cut(s)	776
CseI	GACGC	2 cut(s)	1181, 1236
Csp6I	GTAC	4 cut(s)	845, 865, 938, 1133
CviAII	CATG	4 cut(s)	346, 523, 628, 758
CviQI	GTAC	4 cut(s)	845, 865, 938, 1133
DdeI	CTNAG	5 cut(s)	61, 309, 459, 898, 1019
DpnI	GATC	5 cut(s)	5, 618, 892, 1052, 1158
DpnII	GATC	5 cut(s)	3, 616, 890, 1050, 1156
DraI	TTTAAA	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	831
Eam1104I	CTCTTC	5 cut(s)	154, 171, 313, 827, 956
EarI	CTCTTC	5 cut(s)	154, 171, 313, 827, 956
EciI	GGCGGA	2 cut(s)	420, 1043
Eco130I	CCWWGG	1 cut(s)	757
Eco47I	GGWCC	1 cut(s)	776
Eco81I	CCTNAGG	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	390
EcoRI	GAATTC	1 cut(s)	1091
EcoT14I	CCWWGG	1 cut(s)	757
ErhI	CCWWGG	1 cut(s)	757
FaeI	CATG	4 cut(s)	349, 526, 631, 761
FalI	AAGNNNNNCTT	4 cut(s)	914, 946, 978, 1010
FaqI	GGGAC	2 cut(s)	789, 1085
FatI	CATG	4 cut(s)	345, 522, 627, 757
FauI	CCCGC	1 cut(s)	686
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	8 cut(s)	264, 387, 450, 660, 663, 754, 972, 1292
FokI	GGATG	4 cut(s)	342, 492, 766, 775
Fsp4HI	GCNGC	8 cut(s)	264, 387, 450, 660, 663, 754, 972, 1292
FspBI	CTAG	6 cut(s)	666, 906, 1100, 1217, 1326, 1330
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	8 cut(s)	264, 387, 450, 660, 663, 754, 972, 1292
HaeIII	GGCC	2 cut(s)	659, 833
HapII	CCGG	1 cut(s)	830
HgaI	GACGC	2 cut(s)	1181, 1236
HhaI	GCGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	1173
Hin1II	CATG	4 cut(s)	349, 526, 631, 761
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	3 cut(s)	370, 409, 1026
HindII	GTYRAC	3 cut(s)	370, 409, 1026
HinfI	GANTC	6 cut(s)	14, 36, 393, 410, 1027, 1103
HpaII	CCGG	1 cut(s)	830
HphI	GGTGA	2 cut(s)	328, 1312
Hpy166II	GTNNAC	6 cut(s)	370, 409, 715, 865, 940, 1026
Hpy188I	TCNGA	3 cut(s)	229, 472, 1014
Hpy188III	TCNNGA	4 cut(s)	40, 575, 900, 1088
Hpy8I	GTNNAC	6 cut(s)	370, 409, 715, 865, 940, 1026
HpyAV	CCTTC	6 cut(s)	109, 197, 371, 649, 1033, 1186
HpyCH4III	ACNGT	3 cut(s)	253, 259, 478
HpyCH4V	TGCA	3 cut(s)	266, 702, 749
HpyF10VI	GCNNNNNNNGC	3 cut(s)	656, 699, 977
HpyF3I	CTNAG	5 cut(s)	61, 309, 459, 898, 1019
Hsp92I	GRCGYC	1 cut(s)	1173
Hsp92II	CATG	4 cut(s)	349, 526, 631, 761
HspAI	GCGC	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 616, 890, 1050, 1156
LmnI	GCTCC	2 cut(s)	383, 902
Lsp1109I	GCAGC	6 cut(s)	250, 398, 436, 649, 765, 983
LweI	GCATC	2 cut(s)	220, 320
MaeI	CTAG	6 cut(s)	666, 906, 1100, 1217, 1326, 1330
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	5 cut(s)	5, 618, 892, 1052, 1158
MboI	GATC	5 cut(s)	3, 616, 890, 1050, 1156
MfeI	CAATTG	2 cut(s)	600, 684
MflI	RGATCY	2 cut(s)	890, 1050
MluCI	AATT	6 cut(s)	174, 600, 684, 728, 870, 1091
MlyI	GAGTC	5 cut(s)	8, 402, 404, 1021, 1112
MmeI	TCCRAC	2 cut(s)	850, 858
MseI	TTAA	2 cut(s)	81, 1278
MslI	CAYNNNNRTG	1 cut(s)	344
MspA1I	CMGCKG	3 cut(s)	449, 662, 1271
MspI	CCGG	1 cut(s)	830
MunI	CAATTG	2 cut(s)	600, 684
MvnI	CGCG	2 cut(s)	25, 1191
MwoI	GCNNNNNNNGC	3 cut(s)	656, 699, 977
NcoI	CCATGG	1 cut(s)	757
NdeII	GATC	5 cut(s)	3, 616, 890, 1050, 1156
NlaIII	CATG	4 cut(s)	349, 526, 631, 761
NlaIV	GGNNCC	3 cut(s)	294, 589, 777
NmuCI	GTSAC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	526
NspV	TTCGAA	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	36
PflMI	CCANNNNNTGG	3 cut(s)	217, 763, 1068
PkrI	GCNGC	8 cut(s)	265, 388, 451, 661, 664, 755, 973, 1293
PleI	GAGTC	5 cut(s)	8, 401, 404, 1021, 1111
PpsI	GAGTC	5 cut(s)	8, 401, 404, 1021, 1111
PspN4I	GGNNCC	3 cut(s)	294, 589, 777
PspPI	GGNCC	1 cut(s)	776
PsuI	RGATCY	2 cut(s)	890, 1050
RsaI	GTAC	4 cut(s)	846, 866, 939, 1134
RsaNI	GTAC	4 cut(s)	845, 865, 938, 1133
RseI	CAYNNNNRTG	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	81, 1278
SatI	GCNGC	8 cut(s)	264, 387, 450, 660, 663, 754, 972, 1292
Sau3AI	GATC	5 cut(s)	3, 616, 890, 1050, 1156
Sau96I	GGNCC	1 cut(s)	776
ScaI	AGTACT	1 cut(s)	1134
SchI	GAGTC	5 cut(s)	8, 402, 404, 1021, 1112
SfaNI	GCATC	2 cut(s)	220, 320
SfcI	CTRYAG	1 cut(s)	678
SfuI	TTCGAA	1 cut(s)	181
SinI	GGWCC	1 cut(s)	776
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	2 cut(s)	415, 1029
SmoI	CTYRAG	2 cut(s)	415, 1029
Sse9I	AATT	6 cut(s)	174, 600, 684, 728, 870, 1091
SsiI	CCGC	7 cut(s)	431, 447, 660, 693, 1054, 1271, 1291
SspMI	CTAG	6 cut(s)	666, 906, 1100, 1217, 1326, 1330
StyI	CCWWGG	1 cut(s)	757
TaaI	ACNGT	3 cut(s)	253, 259, 478
TaqI	TCGA	7 cut(s)	17, 34, 41, 181, 190, 528, 1159
TasI	AATT	6 cut(s)	174, 600, 684, 728, 870, 1091
TatI	WGTACW	3 cut(s)	864, 937, 1132
TauI	GCSGC	2 cut(s)	662, 1294
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	2 cut(s)	81, 1278
Tru9I	TTAA	2 cut(s)	81, 1278
TscAI	CASTG	3 cut(s)	483, 657, 841
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	6 cut(s)	263, 386, 449, 662, 753, 971
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	3 cut(s)	97, 362, 616
TspGWI	ACGGA	1 cut(s)	935
TspRI	CASTG	3 cut(s)	483, 657, 841
Van91I	CCANNNNNTGG	3 cut(s)	217, 763, 1068
VpaK11BI	GGWCC	1 cut(s)	776
XapI	RAATTY	3 cut(s)	174, 870, 1091
XceI	RCATGY	1 cut(s)	526
XcmI	CCANNNNNNNNNTGG	2 cut(s)	214, 1065
XspI	CTAG	6 cut(s)	666, 906, 1100, 1217, 1326, 1330
ZrmI	AGTACT	1 cut(s)	1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.