Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006485

Physical Location & Seq

Genomic Coordinates Forward (+)

44446298 .. 44449117

Gene Structure 2820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1365900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTTTTCACAATCGGTGCCAAAACCGATAACTGAGGCAGGAAGAGGAGGAGGATGCTTCACCATTCCCATGAACATCAAGGTTTTGAATGTTGACACAGAAGGGGGAGCAGCCCGAGTCAATGCTTGGGTTGACTCCTTGAGAGCTTCTTCTCCGCCTCGTGTCAAATCCGCTGCCACTCCTCAGTCTCTTTCTGAAACCGTGGATAATAACTCTTGGAGTAGTCGCCATCCATCAGCTATGAGTATGTTCGAGCAGATAACAAATGCTTCGAAGGGCAAGCAGATTGTAATGTTTCTTGACTACGATGGCACCCTCTCCCCAATTGTGGAAGACCCAGATCGTGCTTTCATGTCCAATGAGATGAGAAGGGCAGTGAAGGCCGCTGCTGGATACTTTCCTACAGCAATAGTTAGCGGGAGGTGCAGGGACAAGGTTTACAGCTTTGTAAAATTAGGAGAGCTTTATTATGCAGGCAGCCATGGGATGGACATCAAGGGACCATCCAAAAGTAGCAAATATAAGAATGGTAATCAAGCAGTTCTCTTCCAACCGGCCAGTGAGTTTGTACCAATGATTGATGAGGTGTACAAAATTTTATTGGAGAAAACCAGATCCATCTCAGGAGCTAGGGTGGAAGATAATAAGTTTTGTTTATCTGTACACTTCCGTTGTGTTGATGAGAAGAGTTGGGCAGCTTTAGCAGAGCAAGTTAGACTTGTTCTCAATGAGTATCCGAAGCTCAGGTTGACTCAAGGGAGGAAGGTATTAGAGATCCGCCCAACCATCAAATGGGACAAAGGCAAAGCTCTAGAATTCCTGCTAGAGTCATTAGGATATGCGAACTCAAACGAAGTACTACCAGTCTATATTGGAGATGATCGAACAGACGAGGACGCCTTCAAGGTGCTACGCGATAGAGGACAAGGATTTGGTATTCTAGTTTCTAAAGTTCCAAAAGAAACAAATGCGTCTTACACTTTACAAGAACCAGCAGAGGTTAAGGATTTTTTGCGGCGTTTGGTGAAATGGAAAAGATTGTCAAACCAGCAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004805 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0015927 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016798 GO:0019203 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

353

Amino Acids

39.34

Weight (kDa)

9.29

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	99 - 331	1.5e-72	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35910
fragaria_vesca	FvH4_3g04100 FvH4_3g04100 FvH4_3g04100 FvH4_3g04100 FvH4_5g37780 FvH4_5g37780 FvH4_5g37780 FvH4_5g37780
malus_domestica	MD08G1180400.v1.1 MD15G1365900.v1.1
prunus_persica	Prupe.1G513800_v2.0.a1
pyrus_communis	pycom08g15440 pycom15g32820
rosa_chinensis	RchiOBHm_Chr7g0239531
rosa_laevigata	RLG00000000747
rosa_multiflora	Rmu_sc0003379.1_g000024
rosa_roxburghii	Rroxscaffold_3G00220860
rosa_rugosa	Rorug07G0328400 Rorug07G0328400
rosa_samantha	Rh7AG482300 Rh7BG286700 Rh7BG455100 Rh7CG500000 Rh7DG468200
rosa_wichuraiana	Rw7G040390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	16, 311
AccB7I	CCANNNNNTGG	2 cut(s)	487, 792
AccII	CGCG	1 cut(s)	915
AciI	CCGC	6 cut(s)	155, 171, 384, 417, 778, 1015
AclWI	GGATC	2 cut(s)	609, 769
AcoI	YGGCCR	1 cut(s)	555
AcsI	RAATTY	2 cut(s)	594, 815
AcyI	GRCGYC	1 cut(s)	897
AfaI	GTAC	4 cut(s)	570, 590, 663, 858
AfiI	CCNNNNNNNGG	3 cut(s)	328, 487, 792
AgsI	TTSAA	2 cut(s)	88, 904
AluBI	AGCT	8 cut(s)	146, 239, 444, 463, 629, 698, 742, 809
AluI	AGCT	8 cut(s)	146, 239, 444, 463, 629, 698, 742, 809
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	2 cut(s)	609, 769
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	2 cut(s)	381, 555
ApeKI	GCWGC	5 cut(s)	110, 173, 386, 477, 695
ApoI	RAATTY	2 cut(s)	594, 815
AspS9I	GGNCC	1 cut(s)	500
AsuHPI	GGTGA	2 cut(s)	52, 1036
AsuII	TTCGAA	1 cut(s)	272
AvaI	CYCGRG	1 cut(s)	114
AvaII	GGWCC	1 cut(s)	500
BanI	GGYRCC	2 cut(s)	16, 311
BauI	CACGAG	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	339
BbvI	GCAGC	5 cut(s)	122, 160, 373, 489, 707
BccI	CCATC	7 cut(s)	237, 241, 302, 481, 511, 626, 794
BciVI	GTATCC	2 cut(s)	386, 744
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	4 cut(s)	630, 812, 824, 941
BfmI	CTRYAG	1 cut(s)	402
BfuI	GTATCC	2 cut(s)	386, 744
BisI	GCNGC	7 cut(s)	111, 174, 384, 387, 478, 696, 1016
BlsI	GCNGC	7 cut(s)	112, 175, 385, 388, 479, 697, 1017
BmcAI	AGTACT	1 cut(s)	858
Bme18I	GGWCC	1 cut(s)	500
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	3 cut(s)	18, 313, 501
BmsI	GCATC	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	743
Bpu14I	TTCGAA	1 cut(s)	272
BpuEI	CTTGAG	2 cut(s)	160, 738
BsaBI	GATNNNNATC	1 cut(s)	491
BsaHI	GRCGYC	1 cut(s)	897
BsaJI	CCNNGG	2 cut(s)	201, 481
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bsc4I	CCNNNNNNNGG	3 cut(s)	328, 487, 792
Bse118I	RCCGGY	1 cut(s)	553
Bse1I	ACTGG	2 cut(s)	558, 863
Bse8I	GATNNNNATC	1 cut(s)	491
BseDI	CCNNGG	2 cut(s)	201, 481
BseGI	GGATG	4 cut(s)	59, 229, 492, 503
BseJI	GATNNNNATC	1 cut(s)	491
BseLI	CCNNNNNNNGG	3 cut(s)	328, 487, 792
BseMII	CTCAG	4 cut(s)	24, 197, 636, 757
BseNI	ACTGG	2 cut(s)	558, 863
BseRI	GAGGAG	3 cut(s)	60, 63, 171
BseXI	GCAGC	5 cut(s)	122, 160, 373, 489, 707
BsgI	GTGCAG	1 cut(s)	445
Bsh1236I	CGCG	1 cut(s)	915
BshFI	GGCC	2 cut(s)	383, 557
BshNI	GGYRCC	2 cut(s)	16, 311
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	554
BslFI	GGGAC	3 cut(s)	443, 513, 809
BslI	CCNNNNNNNGG	3 cut(s)	328, 487, 792
BsmAI	GTCTC	1 cut(s)	192
BsmFI	GGGAC	3 cut(s)	443, 513, 809
BsnI	GGCC	2 cut(s)	383, 557
BsoBI	CYCGRG	1 cut(s)	114
Bsp119I	TTCGAA	1 cut(s)	272
Bsp1407I	TGTACA	2 cut(s)	588, 661
Bsp143I	GATC	4 cut(s)	340, 614, 774, 880
Bsp19I	CCATGG	1 cut(s)	481
BspACI	CCGC	6 cut(s)	155, 171, 384, 417, 778, 1015
BspANI	GGCC	2 cut(s)	383, 557
BspCNI	CTCAG	4 cut(s)	25, 196, 635, 756
BspFNI	CGCG	1 cut(s)	915
BspLI	GGNNCC	3 cut(s)	18, 313, 501
BspPI	GGATC	2 cut(s)	609, 769
BspT104I	TTCGAA	1 cut(s)	272
BspT107I	GGYRCC	2 cut(s)	16, 311
BsrFI	RCCGGY	1 cut(s)	553
BsrGI	TGTACA	2 cut(s)	588, 661
BsrI	ACTGG	2 cut(s)	558, 863
BssAI	RCCGGY	1 cut(s)	553
BssECI	CCNNGG	2 cut(s)	201, 481
BssMI	GATC	4 cut(s)	340, 614, 774, 880
BssNI	GRCGYC	1 cut(s)	897
BssSI	CACGAG	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	481
Bst2BI	CACGAG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	3 cut(s)	37, 551, 680
BstACI	GRCGYC	1 cut(s)	897
BstAUI	TGTACA	2 cut(s)	588, 661
BstBI	TTCGAA	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	281, 475
BstDEI	CTNAG	4 cut(s)	33, 183, 622, 743
BstDSI	CCRYGG	2 cut(s)	201, 481
BstF5I	GGATG	4 cut(s)	59, 229, 492, 503
BstFNI	CGCG	1 cut(s)	915
BstKTI	GATC	4 cut(s)	343, 617, 777, 883
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	4 cut(s)	340, 614, 774, 880
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 423, 701
BstSFI	CTRYAG	1 cut(s)	402
BstUI	CGCG	1 cut(s)	915
BstV1I	GCAGC	5 cut(s)	122, 160, 373, 489, 707
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	2 cut(s)	614, 774
BstYI	RGATCY	2 cut(s)	614, 774
BsuI	GTATCC	2 cut(s)	386, 744
BsuRI	GGCC	2 cut(s)	383, 557
BtgI	CCRYGG	2 cut(s)	201, 481
BtsCI	GGATG	4 cut(s)	59, 229, 492, 503
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	381, 565
Cac8I	GCNNGC	2 cut(s)	281, 475
Cfr10I	RCCGGY	1 cut(s)	553
Cfr13I	GGNCC	1 cut(s)	500
CseI	GACGC	2 cut(s)	905, 960
Csp6I	GTAC	4 cut(s)	569, 589, 662, 857
CviAII	CATG	3 cut(s)	70, 352, 482
CviQI	GTAC	4 cut(s)	569, 589, 662, 857
DdeI	CTNAG	4 cut(s)	33, 183, 622, 743
DpnI	GATC	4 cut(s)	342, 616, 776, 882
DpnII	GATC	4 cut(s)	340, 614, 774, 880
EaeI	YGGCCR	1 cut(s)	555
Eam1104I	CTCTTC	3 cut(s)	37, 551, 680
EarI	CTCTTC	3 cut(s)	37, 551, 680
EciI	GGCGGA	2 cut(s)	144, 767
Eco130I	CCWWGG	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	500
Eco88I	CYCGRG	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	815
EcoT14I	CCWWGG	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	3 cut(s)	73, 355, 485
FaiI	YATR	9 cut(s)	71, 242, 248, 353, 471, 483, 522, 840, 870
FalI	AAGNNNNNCTT	2 cut(s)	702, 734
FaqI	GGGAC	3 cut(s)	443, 513, 809
FatI	CATG	3 cut(s)	69, 351, 481
FauI	CCCGC	1 cut(s)	410
Fnu4HI	GCNGC	7 cut(s)	111, 174, 384, 387, 478, 696, 1016
FokI	GGATG	4 cut(s)	66, 216, 490, 499
Fsp4HI	GCNGC	7 cut(s)	111, 174, 384, 387, 478, 696, 1016
FspBI	CTAG	4 cut(s)	630, 812, 824, 941
GluI	GCNGC	7 cut(s)	111, 174, 384, 387, 478, 696, 1016
HaeIII	GGCC	2 cut(s)	383, 557
HapII	CCGG	1 cut(s)	554
HgaI	GACGC	2 cut(s)	905, 960
Hin1I	GRCGYC	1 cut(s)	897
Hin1II	CATG	3 cut(s)	73, 355, 485
HincII	GTYRAC	3 cut(s)	94, 133, 750
HindII	GTYRAC	3 cut(s)	94, 133, 750
HinfI	GANTC	4 cut(s)	117, 134, 751, 827
HpaII	CCGG	1 cut(s)	554
HphI	GGTGA	2 cut(s)	52, 1036
Hpy166II	GTNNAC	6 cut(s)	94, 133, 439, 589, 664, 750
Hpy188I	TCNGA	2 cut(s)	196, 738
Hpy188III	TCNNGA	3 cut(s)	299, 624, 812
Hpy8I	GTNNAC	6 cut(s)	94, 133, 439, 589, 664, 750
HpyAV	CCTTC	6 cut(s)	95, 268, 363, 373, 757, 910
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	2 cut(s)	426, 473
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 423, 701
HpyF3I	CTNAG	4 cut(s)	33, 183, 622, 743
Hsp92I	GRCGYC	1 cut(s)	897
Hsp92II	CATG	3 cut(s)	73, 355, 485
Kzo9I	GATC	4 cut(s)	340, 614, 774, 880
LmnI	GCTCC	2 cut(s)	107, 626
Lsp1109I	GCAGC	5 cut(s)	122, 160, 373, 489, 707
LweI	GCATC	1 cut(s)	44
MaeI	CTAG	4 cut(s)	630, 812, 824, 941
MalI	GATC	4 cut(s)	342, 616, 776, 882
MboI	GATC	4 cut(s)	340, 614, 774, 880
MboII	GAAGA	6 cut(s)	54, 141, 344, 538, 650, 697
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	2 cut(s)	614, 774
MluCI	AATT	4 cut(s)	324, 452, 594, 815
MlyI	GAGTC	4 cut(s)	126, 128, 745, 836
MmeI	TCCRAC	1 cut(s)	574
MseI	TTAA	1 cut(s)	1002
MslI	CAYNNNNRTG	1 cut(s)	68
MspA1I	CMGCKG	2 cut(s)	173, 386
MspI	CCGG	1 cut(s)	554
MunI	CAATTG	1 cut(s)	324
MvnI	CGCG	1 cut(s)	915
MwoI	GCNNNNNNNGC	3 cut(s)	380, 423, 701
NcoI	CCATGG	1 cut(s)	481
NdeII	GATC	4 cut(s)	340, 614, 774, 880
NlaIII	CATG	3 cut(s)	73, 355, 485
NlaIV	GGNNCC	3 cut(s)	18, 313, 501
NspV	TTCGAA	1 cut(s)	272
PflMI	CCANNNNNTGG	2 cut(s)	487, 792
PkrI	GCNGC	7 cut(s)	112, 175, 385, 388, 479, 697, 1017
PleI	GAGTC	4 cut(s)	125, 128, 745, 835
PpsI	GAGTC	4 cut(s)	125, 128, 745, 835
PspN4I	GGNNCC	3 cut(s)	18, 313, 501
PspPI	GGNCC	1 cut(s)	500
PsuI	RGATCY	2 cut(s)	614, 774
RsaI	GTAC	4 cut(s)	570, 590, 663, 858
RsaNI	GTAC	4 cut(s)	569, 589, 662, 857
RseI	CAYNNNNRTG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	1002
SatI	GCNGC	7 cut(s)	111, 174, 384, 387, 478, 696, 1016
Sau3AI	GATC	4 cut(s)	340, 614, 774, 880
Sau96I	GGNCC	1 cut(s)	500
ScaI	AGTACT	1 cut(s)	858
SchI	GAGTC	4 cut(s)	126, 128, 745, 836
SfaNI	GCATC	1 cut(s)	44
SfcI	CTRYAG	1 cut(s)	402
SfuI	TTCGAA	1 cut(s)	272
SinI	GGWCC	1 cut(s)	500
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	2 cut(s)	139, 753
SmoI	CTYRAG	2 cut(s)	139, 753
Sse9I	AATT	4 cut(s)	324, 452, 594, 815
SsiI	CCGC	6 cut(s)	155, 171, 384, 417, 778, 1015
SspMI	CTAG	4 cut(s)	630, 812, 824, 941
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	1 cut(s)	202
TaqI	TCGA	3 cut(s)	252, 272, 883
TasI	AATT	4 cut(s)	324, 452, 594, 815
TatI	WGTACW	3 cut(s)	588, 661, 856
TauI	GCSGC	2 cut(s)	386, 1018
Tru1I	TTAA	1 cut(s)	1002
Tru9I	TTAA	1 cut(s)	1002
TscAI	CASTG	2 cut(s)	381, 565
TseI	GCWGC	5 cut(s)	110, 173, 386, 477, 695
TspDTI	ATGAA	2 cut(s)	86, 340
TspGWI	ACGGA	1 cut(s)	659
TspRI	CASTG	2 cut(s)	381, 565
Van91I	CCANNNNNTGG	2 cut(s)	487, 792
VpaK11BI	GGWCC	1 cut(s)	500
XapI	RAATTY	2 cut(s)	594, 815
XbaI	TCTAGA	1 cut(s)	811
XcmI	CCANNNNNNNNNTGG	1 cut(s)	789
XspI	CTAG	4 cut(s)	630, 812, 824, 941
ZrmI	AGTACT	1 cut(s)	858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.