Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002403

Physical Location & Seq

Genomic Coordinates Forward (+)

28094382 .. 28096030

Gene Structure 1649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g38040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCACCTACAACAACCGCCGTCGCCGACGAAACCAAAGTAGCAAGCATCAAGACACTTACCGACACCGGGGCTGAACTCAACTCCGTACCATCGGAGTACACCTACGTCAAGGACCCCAACGATCAAGCCGATGCCAGTGACCCAGAACACTCTATCCCCACCATCGATTTCGCCCATCTCACCTCCAGCAACCCAAAACTCCGTGCCGACGCCATTGAAAAGCTTGGGAAAGCTTGCGAGGAATGGGGATTCTTTCAGGTTATCAACCATGGTGTACCTGAGAGCCTGATGAAATCGATGATAGAGGCGTGCCACAAGTTTTTTCAGCTTCCTGAGGAGGAGAAGAAGGAGTTCCAATCAAGGAAGCTTTTGGAACCAATCAAGTGCGGGACAAGCTTTAACGTTGCGATCGACAAGGTTCGTCTGTGGAGGGATTACCTCAAGGTCATAGCACACCCGGAGTTCCACTCACTCCACAAGCCCGCTGAGTACAGCGACGTTTCATTCGAGTTCAGCAAACAAACTCGACAAGTTGCTACCGAATTGTTGAGCGGAATATCTGAGAGCTTGGGGTTGGAGGCTGAGTACATAGCCAAGGCCATGAACTGGGACCGTGGCATGCAAATCCTCGCCGCTAACTACTATCCGGCGTGTCCACAGCCCGACCTAGCCATCGGAATCCCCCCTCACACCGATCACGGACTTGTGACTCTTCTTATTCAGAATGATATGGGAGGCCTTGAAGTCCAGCACAACGGGAAGTGGGTGCTCGTTGATTGTGCTCCGGGTGCTTTTGTTGTTAACATTGGTGATCAAATGCAGATATTGACTAATGATAAGTACAAGAGCGTCTGGCATCGGGCTGTTGTGAACAACAGAGCTACAAGGATCTCCATAGCTGTACCACATGGACCTGCACTTGACACTGCTGCTCTTCCAATCCCGGAGTTGTTGGGCGGTGAAGCACCAAAATACATCGGAATGTCATATGAAGAGTTCATGGAACTTCAGGCCAGTCCGGCGGCGTACATGATGCCTTGTTTAGATCACCTGCGAGTCAAGGCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

358

Amino Acids

39.58

Weight (kDa)

5.26

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	53 - 162	2.9e-27	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	209 - 304	4.9e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38040 FvH4_5g38040 FvH4_5g38050
malus_domestica	MD05G1046000.v1.1 MD10G1052800.v1.1 MD10G1053000.v1.1 MD10G1053100.v1.1 MD10G1053200.v1.1
prunus_persica	Prupe.8G066500_v2.0.a1 Prupe.8G066600_v2.0.a1 Prupe.8G066600_v2.0.a1
pyrus_communis	pycom05g03830 pycom10g03780 pycom10g03830 pycom10g03910 pycom10g04020
rosa_chinensis	RchiOBHm_Chr6g0265671 RchiOBHm_Chr7g0239961 RchiOBHm_Chr7g0239991
rosa_laevigata	RLG00000000713 RLG00000000714 RLG00000014168
rosa_multiflora	Rmu_co8141760.1_g000001 Rmu_sc0000540.1_g000014 Rmu_sc0000540.1_g000017 Rmu_sc0006825.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220550 Rroxscaffold_3G00220590
rosa_rugosa	Rorug06G0018400 Rorug07G0331500
rosa_samantha	Rh6BG140400 Rh6CG137300 Rh6DG123800 Rh7AG485400 Rh7AG485500 Rh7BG458200 Rh7BG458300 Rh7CG502500 Rh7CG502700 Rh7DG470900 Rh7DG471000
rosa_wichuraiana	Rw7G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1062
Acc36I	ACCTGC	2 cut(s)	925, 1062
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	609
AccBSI	CCGCTC	1 cut(s)	555
AciI	CCGC	7 cut(s)	18, 390, 486, 555, 636, 960, 1025
AclI	AACGTT	1 cut(s)	405
AclWI	GGATC	1 cut(s)	899
AcuI	CTGAAG	1 cut(s)	995
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	8 cut(s)	90, 101, 279, 494, 590, 845, 906, 1031
AfiI	CCNNNNNNNGG	2 cut(s)	69, 609
AgsI	TTSAA	2 cut(s)	221, 746
AloI	GAACNNNNNNTCC	2 cut(s)	141, 173
AluBI	AGCT	8 cut(s)	226, 236, 331, 370, 399, 570, 884, 902
AluI	AGCT	8 cut(s)	226, 236, 331, 370, 399, 570, 884, 902
Alw21I	GWGCWC	2 cut(s)	774, 787
AlwI	GGATC	1 cut(s)	899
AoxI	GGCC	4 cut(s)	600, 739, 1014, 1065
ApeKI	GCWGC	1 cut(s)	932
ArsI	GACNNNNNNTTYG	2 cut(s)	491, 523
Asp700I	GAANNNNTTC	1 cut(s)	353
AspS9I	GGNCC	3 cut(s)	115, 613, 914
AsuC2I	CCSGG	4 cut(s)	70, 461, 789, 947
AsuHPI	GGTGA	4 cut(s)	175, 824, 974, 1043
AvaII	GGWCC	3 cut(s)	115, 613, 914
AxyI	CCTNAGG	1 cut(s)	336
BanI	GGYRCC	1 cut(s)	4
Bbv12I	GWGCWC	2 cut(s)	774, 787
BbvI	GCAGC	1 cut(s)	919
BccI	CCATC	4 cut(s)	100, 173, 186, 683
BceAI	ACGGC	1 cut(s)	5
BclI	TGATCA	1 cut(s)	814
BcnI	CCSGG	4 cut(s)	70, 461, 789, 947
BfaI	CTAG	1 cut(s)	671
BfuAI	ACCTGC	2 cut(s)	925, 1062
BglI	GCCNNNNNGGC	1 cut(s)	1022
BisI	GCNGC	3 cut(s)	636, 933, 1026
BlsI	GCNGC	3 cut(s)	637, 934, 1027
Bme1390I	CCNGG	4 cut(s)	70, 461, 789, 947
Bme18I	GGWCC	3 cut(s)	115, 613, 914
BmgT120I	GGNCC	3 cut(s)	115, 613, 914
BmiI	GGNNCC	4 cut(s)	6, 117, 378, 614
BmrFI	CCNGG	4 cut(s)	70, 461, 789, 947
BmrI	ACTGGG	1 cut(s)	619
BmsI	GCATC	4 cut(s)	57, 124, 868, 1026
BmuI	ACTGGG	1 cut(s)	619
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
BpmI	CTGGAG	1 cut(s)	172
BpuEI	CTTGAG	1 cut(s)	428
BpuMI	CCSGG	4 cut(s)	70, 461, 789, 947
Bsa29I	ATCGAT	2 cut(s)	168, 299
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	4 cut(s)	69, 271, 597, 616
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 609
Bse1I	ACTGG	3 cut(s)	138, 614, 1017
Bse21I	CCTNAGG	1 cut(s)	336
BseCI	ATCGAT	2 cut(s)	168, 299
BseDI	CCNNGG	4 cut(s)	69, 271, 597, 616
BseLI	CCNNNNNNNGG	2 cut(s)	69, 609
BseMII	CTCAG	5 cut(s)	273, 327, 480, 555, 576
BseNI	ACTGG	3 cut(s)	138, 614, 1017
BseRI	GAGGAG	2 cut(s)	353, 356
BseXI	GCAGC	1 cut(s)	919
BsgI	GTGCAG	1 cut(s)	903
Bsh1285I	CGRYCG	1 cut(s)	414
BshFI	GGCC	4 cut(s)	602, 741, 1016, 1067
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	2 cut(s)	168, 299
BsiEI	CGRYCG	1 cut(s)	414
BsiHKAI	GWGCWC	2 cut(s)	774, 787
BsiSI	CCGG	6 cut(s)	69, 461, 650, 788, 947, 1022
BslFI	GGGAC	2 cut(s)	406, 626
BslI	CCNNNNNNNGG	2 cut(s)	69, 609
BsmFI	GGGAC	2 cut(s)	406, 626
BsnI	GGCC	4 cut(s)	602, 741, 1016, 1067
Bsp1286I	GDGCHC	2 cut(s)	774, 787
Bsp143I	GATC	6 cut(s)	124, 411, 697, 814, 891, 1048
Bsp19I	CCATGG	1 cut(s)	271
BspACI	CCGC	7 cut(s)	18, 390, 486, 555, 636, 960, 1025
BspANI	GGCC	4 cut(s)	602, 741, 1016, 1067
BspCNI	CTCAG	5 cut(s)	274, 328, 481, 556, 577
BspDI	ATCGAT	2 cut(s)	168, 299
BspLI	GGNNCC	4 cut(s)	6, 117, 378, 614
BspMI	ACCTGC	2 cut(s)	925, 1062
BspPI	GGATC	1 cut(s)	899
BspQI	GCTCTTC	1 cut(s)	942
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	555
BsrI	ACTGG	3 cut(s)	138, 614, 1017
BssECI	CCNNGG	4 cut(s)	69, 271, 597, 616
BssMI	GATC	6 cut(s)	124, 411, 697, 814, 891, 1048
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	271, 597
Bst4CI	ACNGT	1 cut(s)	617
Bst6I	CTCTTC	3 cut(s)	720, 942, 990
BstACI	GRCGYC	1 cut(s)	213
BstC8I	GCNNGC	5 cut(s)	46, 238, 313, 486, 623
BstDEI	CTNAG	5 cut(s)	282, 336, 489, 564, 585
BstDSI	CCRYGG	2 cut(s)	271, 616
BstKTI	GATC	6 cut(s)	127, 414, 700, 817, 894, 1051
BstMBI	GATC	6 cut(s)	124, 411, 697, 814, 891, 1048
BstMCI	CGRYCG	1 cut(s)	414
BstMWI	GCNNNNNNNGC	3 cut(s)	396, 791, 1022
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	4 cut(s)	68, 459, 787, 945
BstV1I	GCAGC	1 cut(s)	919
BstX2I	RGATCY	1 cut(s)	891
BstYI	RGATCY	1 cut(s)	891
Bsu15I	ATCGAT	2 cut(s)	168, 299
Bsu36I	CCTNAGG	1 cut(s)	336
BsuRI	GGCC	4 cut(s)	602, 741, 1016, 1067
BsuTUI	ATCGAT	2 cut(s)	168, 299
BtgI	CCRYGG	2 cut(s)	271, 616
BtsI	GCAGTG	1 cut(s)	927
BtsIMutI	CAGTG	2 cut(s)	145, 927
BveI	ACCTGC	2 cut(s)	925, 1062
Cac8I	GCNNGC	5 cut(s)	46, 238, 313, 486, 623
Cfr13I	GGNCC	3 cut(s)	115, 613, 914
ClaI	ATCGAT	2 cut(s)	168, 299
CseI	GACGC	2 cut(s)	221, 841
Csp6I	GTAC	8 cut(s)	89, 100, 278, 493, 589, 844, 905, 1030
CviAII	CATG	6 cut(s)	272, 604, 622, 911, 1003, 1033
CviQI	GTAC	8 cut(s)	89, 100, 278, 493, 589, 844, 905, 1030
DdeI	CTNAG	5 cut(s)	282, 336, 489, 564, 585
DpnI	GATC	6 cut(s)	126, 413, 699, 816, 893, 1050
DpnII	GATC	6 cut(s)	124, 411, 697, 814, 891, 1048
Eam1104I	CTCTTC	3 cut(s)	720, 942, 990
EarI	CTCTTC	3 cut(s)	720, 942, 990
Eco130I	CCWWGG	2 cut(s)	271, 597
Eco147I	AGGCCT	1 cut(s)	741
Eco47I	GGWCC	3 cut(s)	115, 613, 914
Eco57I	CTGAAG	1 cut(s)	995
Eco81I	CCTNAGG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	115
EcoT14I	CCWWGG	2 cut(s)	271, 597
ErhI	CCWWGG	2 cut(s)	271, 597
FaeI	CATG	6 cut(s)	275, 607, 625, 914, 1006, 1036
FaqI	GGGAC	2 cut(s)	406, 626
FatI	CATG	6 cut(s)	271, 603, 621, 910, 1002, 1032
FauI	CCCGC	2 cut(s)	383, 493
FauNDI	CATATG	1 cut(s)	991
FbaI	TGATCA	1 cut(s)	814
Fnu4HI	GCNGC	3 cut(s)	636, 933, 1026
Fsp4HI	GCNGC	3 cut(s)	636, 933, 1026
FspBI	CTAG	1 cut(s)	671
GluI	GCNGC	3 cut(s)	636, 933, 1026
GsuI	CTGGAG	1 cut(s)	172
HaeIII	GGCC	4 cut(s)	602, 741, 1016, 1067
HapII	CCGG	6 cut(s)	69, 461, 650, 788, 947, 1022
HgaI	GACGC	2 cut(s)	221, 841
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	6 cut(s)	275, 607, 625, 914, 1006, 1036
HincII	GTYRAC	1 cut(s)	805
HindII	GTYRAC	1 cut(s)	805
HindIII	AAGCTT	4 cut(s)	224, 234, 368, 397
HinfI	GANTC	4 cut(s)	252, 681, 712, 1059
HpaI	GTTAAC	1 cut(s)	805
HpaII	CCGG	6 cut(s)	69, 461, 650, 788, 947, 1022
HphI	GGTGA	4 cut(s)	175, 824, 974, 1043
Hpy166II	GTNNAC	5 cut(s)	102, 278, 659, 805, 874
Hpy188I	TCNGA	5 cut(s)	97, 565, 680, 726, 983
Hpy188III	TCNNGA	2 cut(s)	52, 335
Hpy8I	GTNNAC	5 cut(s)	102, 278, 659, 805, 874
Hpy99I	CGWCG	4 cut(s)	26, 32, 215, 503
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	1 cut(s)	617
HpyCH4IV	ACGT	3 cut(s)	108, 405, 501
HpyCH4V	TGCA	3 cut(s)	625, 823, 920
HpyF10VI	GCNNNNNNNGC	3 cut(s)	396, 791, 1022
HpyF3I	CTNAG	5 cut(s)	282, 336, 489, 564, 585
HpySE526I	ACGT	3 cut(s)	108, 405, 501
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	6 cut(s)	275, 607, 625, 914, 1006, 1036
Ksp22I	TGATCA	1 cut(s)	814
KspAI	GTTAAC	1 cut(s)	805
Kzo9I	GATC	6 cut(s)	124, 411, 697, 814, 891, 1048
LguI	GCTCTTC	1 cut(s)	942
LmnI	GCTCC	1 cut(s)	790
Lsp1109I	GCAGC	1 cut(s)	919
LweI	GCATC	4 cut(s)	57, 124, 868, 1026
MaeI	CTAG	1 cut(s)	671
MaeII	ACGT	3 cut(s)	108, 405, 501
MaeIII	GTNAC	2 cut(s)	140, 709
MalI	GATC	6 cut(s)	126, 413, 699, 816, 893, 1050
MbiI	CCGCTC	1 cut(s)	555
MboI	GATC	6 cut(s)	124, 411, 697, 814, 891, 1048
MboII	GAAGA	4 cut(s)	358, 707, 929, 1007
MflI	RGATCY	1 cut(s)	891
MhlI	GDGCHC	2 cut(s)	774, 787
MluCI	AATT	1 cut(s)	545
MlyI	GAGTC	2 cut(s)	706, 1068
MmeI	TCCRAC	1 cut(s)	558
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	2 cut(s)	402, 804
MslI	CAYNNNNRTG	1 cut(s)	983
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	6 cut(s)	69, 461, 650, 788, 947, 1022
MspR9I	CCNGG	4 cut(s)	70, 461, 789, 947
MwoI	GCNNNNNNNGC	3 cut(s)	396, 791, 1022
NciI	CCSGG	4 cut(s)	70, 461, 789, 947
NcoI	CCATGG	1 cut(s)	271
NdeI	CATATG	1 cut(s)	991
NdeII	GATC	6 cut(s)	124, 411, 697, 814, 891, 1048
NlaIII	CATG	6 cut(s)	275, 607, 625, 914, 1006, 1036
NlaIV	GGNNCC	4 cut(s)	6, 117, 378, 614
NmuCI	GTSAC	2 cut(s)	140, 709
NspI	RCATGY	1 cut(s)	625
PaeI	GCATGC	1 cut(s)	625
PaqCI	CACCTGC	1 cut(s)	1062
PceI	AGGCCT	1 cut(s)	741
PciSI	GCTCTTC	1 cut(s)	942
PcsI	WCGNNNNNNNCGW	3 cut(s)	129, 411, 507
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	252, 681
PflMI	CCANNNNNTGG	1 cut(s)	609
PfoI	TCCNGGA	1 cut(s)	945
PkrI	GCNGC	3 cut(s)	637, 934, 1027
Ple19I	CGATCG	1 cut(s)	414
PleI	GAGTC	2 cut(s)	706, 1067
PpsI	GAGTC	2 cut(s)	706, 1067
PpuMI	RGGWCCY	1 cut(s)	115
Psp1406I	AACGTT	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	115
PspN4I	GGNNCC	4 cut(s)	6, 117, 378, 614
PspPI	GGNCC	3 cut(s)	115, 613, 914
PspPPI	RGGWCCY	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	891
PvuI	CGATCG	1 cut(s)	414
RsaI	GTAC	8 cut(s)	90, 101, 279, 494, 590, 845, 906, 1031
RsaNI	GTAC	8 cut(s)	89, 100, 278, 493, 589, 844, 905, 1030
RseI	CAYNNNNRTG	1 cut(s)	983
SapI	GCTCTTC	1 cut(s)	942
SaqAI	TTAA	2 cut(s)	402, 804
SatI	GCNGC	3 cut(s)	636, 933, 1026
Sau3AI	GATC	6 cut(s)	124, 411, 697, 814, 891, 1048
Sau96I	GGNCC	3 cut(s)	115, 613, 914
SchI	GAGTC	2 cut(s)	706, 1068
ScrFI	CCNGG	4 cut(s)	70, 461, 789, 947
SduI	GDGCHC	2 cut(s)	774, 787
SfaNI	GCATC	4 cut(s)	57, 124, 868, 1026
SinI	GGWCC	3 cut(s)	115, 613, 914
SmiMI	CAYNNNNRTG	1 cut(s)	983
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SphI	GCATGC	1 cut(s)	625
Sse9I	AATT	1 cut(s)	545
SseBI	AGGCCT	1 cut(s)	741
SsiI	CCGC	7 cut(s)	18, 390, 486, 555, 636, 960, 1025
SspMI	CTAG	1 cut(s)	671
StuI	AGGCCT	1 cut(s)	741
StyD4I	CCNGG	4 cut(s)	68, 459, 787, 945
StyI	CCWWGG	2 cut(s)	271, 597
TaaI	ACNGT	1 cut(s)	617
TaiI	ACGT	3 cut(s)	111, 408, 504
TaqI	TCGA	5 cut(s)	168, 299, 414, 510, 529
TasI	AATT	1 cut(s)	545
TatI	WGTACW	4 cut(s)	99, 492, 588, 843
TauI	GCSGC	2 cut(s)	638, 1028
TfiI	GAWTC	2 cut(s)	252, 681
Tru1I	TTAA	2 cut(s)	402, 804
Tru9I	TTAA	2 cut(s)	402, 804
TscAI	CASTG	2 cut(s)	145, 934
TseFI	GTSAC	2 cut(s)	140, 709
TseI	GCWGC	1 cut(s)	932
Tsp45I	GTSAC	2 cut(s)	140, 709
TspDTI	ATGAA	5 cut(s)	308, 495, 620, 991, 1008
TspGWI	ACGGA	3 cut(s)	76, 194, 717
TspRI	CASTG	2 cut(s)	145, 934
Van91I	CCANNNNNTGG	1 cut(s)	609
VpaK11BI	GGWCC	3 cut(s)	115, 613, 914
XceI	RCATGY	1 cut(s)	625
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.