Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8141760.1

Orthogroup ID

OG0002403

Physical Location & Seq

Genomic Coordinates Forward (+)

39 .. 641

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8141760.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgaaatccatgatcgaggtgtgccacaagttctttgatcttcctgaggaggagaagaaggagttccaatcaaggaagctattggaaccaatcaagtgcggaacaagctttaacgttgcgatcgacaaagttcgtctgtggagggatttcctcaaggtcatagcacatcccgagttccactcactccacaaacccgccaattacagtgaggtttcgttggagttcagcaaacaaactcgacaagttgcaaccgaattgttgagtggaatatcagagagcttggggttggaggccgagtacatagccaaggccatgaactgggaccgtggcctacaaatcctcgccgctaactattatccggcgtgtccacagcctgatcaagccatcggaatcccccctcacaccgatcacggacttgtgactctccttattcagaatgacatgggtggccttgaagtccagcacaacggcaagtgggtgctagttaattgtgctccgggtgcttttgttgttaacatcggggaccaaatgcagatcttgactaatgataagtacaagagcgtatggcatcgggcagttgtgaacaacagagctacaaggatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

201

Amino Acids

22.78

Weight (kDa)

6.7

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38040 FvH4_5g38040 FvH4_5g38050
malus_domestica	MD05G1046000.v1.1 MD10G1052800.v1.1 MD10G1053000.v1.1 MD10G1053100.v1.1 MD10G1053200.v1.1
prunus_persica	Prupe.8G066500_v2.0.a1 Prupe.8G066600_v2.0.a1 Prupe.8G066600_v2.0.a1
pyrus_communis	pycom05g03830 pycom10g03780 pycom10g03830 pycom10g03910 pycom10g04020
rosa_chinensis	RchiOBHm_Chr6g0265671 RchiOBHm_Chr7g0239961 RchiOBHm_Chr7g0239991
rosa_laevigata	RLG00000000713 RLG00000000714 RLG00000014168
rosa_multiflora	Rmu_co8141760.1_g000001 Rmu_sc0000540.1_g000014 Rmu_sc0000540.1_g000017 Rmu_sc0006825.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220550 Rroxscaffold_3G00220590
rosa_rugosa	Rorug06G0018400 Rorug07G0331500
rosa_samantha	Rh6BG140400 Rh6CG137300 Rh6DG123800 Rh7AG485400 Rh7AG485500 Rh7BG458200 Rh7BG458300 Rh7CG502500 Rh7CG502700 Rh7DG470900 Rh7DG471000
rosa_wichuraiana	Rw7G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	318
AciI	CCGC	3 cut(s)	99, 195, 345
AclI	AACGTT	1 cut(s)	114
AfaI	GTAC	2 cut(s)	299, 554
AfiI	CCNNNNNNNGG	1 cut(s)	318
AgsI	TTSAA	1 cut(s)	455
AluBI	AGCT	4 cut(s)	79, 108, 279, 593
AluI	AGCT	4 cut(s)	79, 108, 279, 593
Alw21I	GWGCWC	1 cut(s)	496
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	4 cut(s)	291, 309, 328, 448
Asp700I	GAANNNNTTC	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	322, 523
AsuC2I	CCSGG	1 cut(s)	498
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	2 cut(s)	322, 523
AxyI	CCTNAGG	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	496
BccI	CCATC	1 cut(s)	392
BceAI	ACGGC	1 cut(s)	484
BclI	TGATCA	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	498
BfaI	CTAG	1 cut(s)	482
BglII	AGATCT	1 cut(s)	534
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	498
Bme18I	GGWCC	2 cut(s)	322, 523
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	322, 523
BmiI	GGNNCC	3 cut(s)	87, 323, 524
BmrFI	CCNGG	1 cut(s)	498
BmrI	ACTGGG	1 cut(s)	328
BmsI	GCATC	1 cut(s)	577
BmuI	ACTGGG	1 cut(s)	328
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpuEI	CTTGAG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	498
BsaJI	CCNNGG	2 cut(s)	306, 325
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse1I	ACTGG	1 cut(s)	323
Bse21I	CCTNAGG	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	306, 325
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	323
BseRI	GAGGAG	2 cut(s)	62, 65
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	4 cut(s)	293, 311, 330, 450
BsiEI	CGRYCG	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	496
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	359, 497
BslFI	GGGAC	2 cut(s)	335, 536
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmFI	GGGAC	2 cut(s)	335, 536
BsnI	GGCC	4 cut(s)	293, 311, 330, 450
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp143I	GATC	6 cut(s)	12, 37, 120, 376, 406, 534
BspACI	CCGC	3 cut(s)	99, 195, 345
BspANI	GGCC	4 cut(s)	293, 311, 330, 450
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	3 cut(s)	87, 323, 524
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	2 cut(s)	306, 325
BssMI	GATC	6 cut(s)	12, 37, 120, 376, 406, 534
BssT1I	CCWWGG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	206, 326
BstDEI	CTNAG	1 cut(s)	45
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	7 cut(s)	15, 40, 123, 379, 409, 537, 603
BstMBI	GATC	6 cut(s)	12, 37, 120, 376, 406, 534
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 500
BstSCI	CCNGG	1 cut(s)	496
BstX2I	RGATCY	1 cut(s)	534
BstYI	RGATCY	1 cut(s)	534
Bsu36I	CCTNAGG	1 cut(s)	45
BsuRI	GGCC	4 cut(s)	293, 311, 330, 450
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	322, 523
Csp6I	GTAC	2 cut(s)	298, 553
CviAII	CATG	3 cut(s)	10, 313, 442
CviQI	GTAC	2 cut(s)	298, 553
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	7 cut(s)	14, 39, 122, 378, 408, 536, 602
DpnII	GATC	6 cut(s)	12, 37, 120, 376, 406, 534
Eco130I	CCWWGG	1 cut(s)	306
Eco47I	GGWCC	2 cut(s)	322, 523
Eco81I	CCTNAGG	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	3 cut(s)	13, 316, 445
FaiI	YATR	6 cut(s)	11, 161, 302, 314, 443, 565
FaqI	GGGAC	2 cut(s)	335, 536
FatI	CATG	3 cut(s)	9, 312, 441
FauI	CCCGC	1 cut(s)	202
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	1 cut(s)	482
GluI	GCNGC	1 cut(s)	345
HaeIII	GGCC	4 cut(s)	293, 311, 330, 450
HapII	CCGG	2 cut(s)	359, 497
Hin1II	CATG	3 cut(s)	13, 316, 445
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	1 cut(s)	106
HinfI	GANTC	2 cut(s)	390, 421
HpaI	GTTAAC	1 cut(s)	514
HpaII	CCGG	2 cut(s)	359, 497
Hpy166II	GTNNAC	3 cut(s)	368, 514, 583
Hpy188I	TCNGA	3 cut(s)	274, 389, 435
Hpy188III	TCNNGA	3 cut(s)	44, 170, 538
Hpy8I	GTNNAC	3 cut(s)	368, 514, 583
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	2 cut(s)	206, 326
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	2 cut(s)	248, 532
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 500
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	13, 316, 445
Ksp22I	TGATCA	1 cut(s)	376
KspAI	GTTAAC	1 cut(s)	514
Kzo9I	GATC	6 cut(s)	12, 37, 120, 376, 406, 534
LmnI	GCTCC	1 cut(s)	499
LpnPI	CCDG	6 cut(s)	57, 304, 372, 387, 473, 510
LweI	GCATC	1 cut(s)	577
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	7 cut(s)	14, 39, 122, 378, 408, 536, 602
MboI	GATC	6 cut(s)	12, 37, 120, 376, 406, 534
MboII	GAAGA	2 cut(s)	32, 67
MflI	RGATCY	1 cut(s)	534
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	3 cut(s)	199, 254, 487
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	2 cut(s)	198, 267
MnlI	CCTC	9 cut(s)	10, 40, 43, 135, 161, 202, 283, 350, 408
MroXI	GAANNNNTTC	1 cut(s)	62
MseI	TTAA	3 cut(s)	111, 486, 513
MspI	CCGG	2 cut(s)	359, 497
MspR9I	CCNGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	2 cut(s)	105, 500
NciI	CCSGG	1 cut(s)	498
NdeII	GATC	6 cut(s)	12, 37, 120, 376, 406, 534
NlaIII	CATG	3 cut(s)	13, 316, 445
NlaIV	GGNNCC	3 cut(s)	87, 323, 524
NmeAIII	GCCGAG	1 cut(s)	319
NmuCI	GTSAC	1 cut(s)	418
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	390
PflMI	CCANNNNNTGG	1 cut(s)	318
PkrI	GCNGC	1 cut(s)	346
Ple19I	CGATCG	1 cut(s)	123
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
Psp1406I	AACGTT	1 cut(s)	114
PspN4I	GGNNCC	3 cut(s)	87, 323, 524
PspPI	GGNCC	2 cut(s)	322, 523
PsuI	RGATCY	1 cut(s)	534
PvuI	CGATCG	1 cut(s)	123
RsaI	GTAC	2 cut(s)	299, 554
RsaNI	GTAC	2 cut(s)	298, 553
SaqAI	TTAA	3 cut(s)	111, 486, 513
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	6 cut(s)	12, 37, 120, 376, 406, 534
Sau96I	GGNCC	2 cut(s)	322, 523
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	1 cut(s)	496
SetI	ASST	8 cut(s)	21, 81, 110, 117, 159, 213, 281, 595
SfaNI	GCATC	1 cut(s)	577
SinI	GGWCC	2 cut(s)	322, 523
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	3 cut(s)	199, 254, 487
SsiI	CCGC	3 cut(s)	99, 195, 345
SspMI	CTAG	1 cut(s)	482
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	206, 326
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	3 cut(s)	15, 123, 238
TasI	AATT	3 cut(s)	199, 254, 487
TatI	WGTACW	2 cut(s)	297, 552
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	3 cut(s)	111, 486, 513
Tru9I	TTAA	3 cut(s)	111, 486, 513
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	418
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	2 cut(s)	17, 329
TspGWI	ACGGA	1 cut(s)	426
TspRI	CASTG	1 cut(s)	211
Van91I	CCANNNNNTGG	1 cut(s)	318
VpaK11BI	GGWCC	2 cut(s)	322, 523
XmnI	GAANNNNTTC	1 cut(s)	62
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.