Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002403

Physical Location & Seq

Genomic Coordinates Reverse (-)

9839014 .. 9842786

Gene Structure 3773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G066600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCACCTGCAGTAACTACTTCATTAACTGAGGCATCCAATGGTCATGAAACCGAAGTTGCAAGCATCAAAAGACTAGCTGGCTCAGCTGCTCTCAGTTCTGTACCTTCCGAGTACACTTACACCAAAAATCCTAATGAACAAGGAGATGCAAATGACCCCGAACACTCAATCCCCACCATTGATTTTGCTCTTCTCACCTCTGGTTCTCCTGATCAACGGGCAAAAGTGATCGAGGAGCTCGGAAGAGCTTGCGAGGAATGGGGCTTCTTCCAGGTGACCAACCACGGTGTACCAGAGAGCTTGATGAAATCAATGATCGACGCGTGTCATAGATTTTTTGATCTACCAGAGGAGGAGAAGAAGGAGTTTCAAACAAAGAACCTGTTGGACCCAATTAGGTGCGGTACCAGCGCCAACGTCGCCATTGAAAAAGTTCGTCTATGGAGGGATTTCCTCAAGGTCATAGCCCACCCTGAATTCAACTCACTCTACAAACCTGCTGGATACAGCGAGGTTTCACTGGAGTTCAGCAAAAGAACCCGAGAAGTAGCCACAGAAATATTGAAGGGAATATCAGAGAGCTTAGGGTTGGAGGCTGACTACATAGCAAAGGCCATGAACTGGGACCGTGGCTTACAAATTCTGGCCGCGAATTACTACCCTGCTTGCCCACAGCCCGATAAAGCGATCGGCATTCCTCCTCATACTGATCACGGACTGGTGACACTCCTCATCCAAAATGAGATGGGTGGCCTTGAAGTCAAGCACAAAGACCAATGGGTGTTGGTGAATGCTGCTCCGGGAGCTTTTATTGTTAACATTGGTGACCAAATGCAGATTTTGACAAACGACAAGTACAAAAGTATATGGCATAGGGCTGTTGTGAACAACAAAGCTACAAGGATATCAATAGCTGTACCACATGGACCTTCACTAGACACACCAGCTTTACCAATCCCAGAGTTGTTAGAGAGAGAAGGCCAAGCACCAAAATACATTGGAATGACATATGAGAAATTCATGGAGCTTCAAGCAAGCCCTGCTGCCTACGTGAAGCCTTGCTTAGATCATCTCCGAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

362

Amino Acids

39.99

Weight (kDa)

5.52

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38040 FvH4_5g38040 FvH4_5g38050
malus_domestica	MD05G1046000.v1.1 MD10G1052800.v1.1 MD10G1053000.v1.1 MD10G1053100.v1.1 MD10G1053200.v1.1
prunus_persica	Prupe.8G066500_v2.0.a1 Prupe.8G066600_v2.0.a1 Prupe.8G066600_v2.0.a1
pyrus_communis	pycom05g03830 pycom10g03780 pycom10g03830 pycom10g03910 pycom10g04020
rosa_chinensis	RchiOBHm_Chr6g0265671 RchiOBHm_Chr7g0239961 RchiOBHm_Chr7g0239991
rosa_laevigata	RLG00000000713 RLG00000000714 RLG00000014168
rosa_multiflora	Rmu_co8141760.1_g000001 Rmu_sc0000540.1_g000014 Rmu_sc0000540.1_g000017 Rmu_sc0006825.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220550 Rroxscaffold_3G00220590
rosa_rugosa	Rorug06G0018400 Rorug07G0331500
rosa_samantha	Rh6BG140400 Rh6CG137300 Rh6DG123800 Rh7AG485400 Rh7AG485500 Rh7BG458200 Rh7BG458300 Rh7CG502500 Rh7CG502700 Rh7DG470900 Rh7DG471000
rosa_wichuraiana	Rw7G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	2 cut(s)	16, 508
Acc65I	GGTACC	1 cut(s)	407
AccB1I	GGYRCC	2 cut(s)	4, 407
AccB7I	CCANNNNNTGG	1 cut(s)	624
AccII	CGCG	2 cut(s)	326, 653
AciI	CCGC	2 cut(s)	405, 651
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	3 cut(s)	479, 642, 1019
AfaI	GTAC	6 cut(s)	105, 116, 294, 409, 860, 921
AfiI	CCNNNNNNNGG	1 cut(s)	624
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	6 cut(s)	374, 431, 484, 568, 761, 1034
AjnI	CCWGG	1 cut(s)	273
AloI	GAACNNNNNNTCC	2 cut(s)	156, 188
Alw21I	GWGCWC	1 cut(s)	243
Ama87I	CYCGRG	1 cut(s)	543
AoxI	GGCC	4 cut(s)	615, 648, 754, 982
ApeKI	GCWGC	3 cut(s)	89, 797, 1046
ApoI	RAATTY	3 cut(s)	479, 642, 1019
Asp700I	GAANNNNTTC	1 cut(s)	435
Asp718I	GGTACC	1 cut(s)	407
AspLEI	GCGC	1 cut(s)	416
AspS9I	GGNCC	3 cut(s)	391, 628, 929
AsuC2I	CCSGG	1 cut(s)	804
AsuHPI	GGTGA	5 cut(s)	190, 289, 736, 802, 839
AvaI	CYCGRG	1 cut(s)	543
AvaII	GGWCC	3 cut(s)	391, 628, 929
BanI	GGYRCC	2 cut(s)	4, 407
BanII	GRGCYC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	3 cut(s)	76, 784, 1033
BccI	CCATC	1 cut(s)	742
BciT130I	CCWGG	1 cut(s)	275
BciVI	GTATCC	1 cut(s)	500
BclI	TGATCA	2 cut(s)	214, 712
BcnI	CCSGG	1 cut(s)	804
BfaI	CTAG	3 cut(s)	77, 938, 1084
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	417
BfuAI	ACCTGC	2 cut(s)	16, 508
BfuI	GTATCC	1 cut(s)	500
BisI	GCNGC	4 cut(s)	90, 651, 798, 1047
BlpI	GCTNAGC	1 cut(s)	85
BlsI	GCNGC	4 cut(s)	91, 652, 799, 1048
Bme1390I	CCNGG	2 cut(s)	275, 804
Bme18I	GGWCC	3 cut(s)	391, 628, 929
BmeT110I	CYCGRG	1 cut(s)	543
BmgT120I	GGNCC	3 cut(s)	391, 628, 929
BmiI	GGNNCC	4 cut(s)	6, 393, 409, 629
BmrFI	CCNGG	2 cut(s)	275, 804
BmrI	ACTGGG	1 cut(s)	634
BmsI	GCATC	3 cut(s)	44, 75, 139
BmuI	ACTGGG	1 cut(s)	634
BoxI	GACNNNNGTC	1 cut(s)	327
BpmI	CTGGAG	1 cut(s)	545
Bpu10I	CCTNAGC	1 cut(s)	586
Bpu1102I	GCTNAGC	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	804
BsaAI	YACGTR	1 cut(s)	1054
BsaJI	CCNNGG	2 cut(s)	286, 631
Bsc4I	CCNNNNNNNGG	1 cut(s)	624
Bse1I	ACTGG	3 cut(s)	528, 629, 726
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	2 cut(s)	286, 631
BseGI	GGATG	2 cut(s)	35, 735
BseLI	CCNNNNNNNGG	1 cut(s)	624
BseMII	CTCAG	3 cut(s)	21, 99, 109
BseNI	ACTGG	3 cut(s)	528, 629, 726
BseRI	GAGGAG	5 cut(s)	251, 368, 371, 693, 722
BseXI	GCAGC	3 cut(s)	76, 784, 1033
Bsh1236I	CGCG	2 cut(s)	326, 653
Bsh1285I	CGRYCG	1 cut(s)	693
BshFI	GGCC	4 cut(s)	617, 650, 756, 984
BshNI	GGYRCC	2 cut(s)	4, 407
BsiEI	CGRYCG	1 cut(s)	693
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	543
BsiSI	CCGG	1 cut(s)	803
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	624
BsmFI	GGGAC	1 cut(s)	641
BsmI	GAATGC	2 cut(s)	696, 799
BsnI	GGCC	4 cut(s)	617, 650, 756, 984
BsoBI	CYCGRG	1 cut(s)	543
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	7 cut(s)	214, 231, 318, 343, 690, 712, 1069
Bsp1720I	GCTNAGC	1 cut(s)	85
BspACI	CCGC	2 cut(s)	405, 651
BspANI	GGCC	4 cut(s)	617, 650, 756, 984
BspCNI	CTCAG	3 cut(s)	22, 98, 108
BspFNI	CGCG	2 cut(s)	326, 653
BspHI	TCATGA	1 cut(s)	46
BspLI	GGNNCC	4 cut(s)	6, 393, 409, 629
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	2 cut(s)	16, 508
BspQI	GCTCTTC	2 cut(s)	198, 241
BspT107I	GGYRCC	2 cut(s)	4, 407
BsrI	ACTGG	3 cut(s)	528, 629, 726
BssECI	CCNNGG	2 cut(s)	286, 631
BssMI	GATC	7 cut(s)	214, 231, 318, 343, 690, 712, 1069
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	2 cut(s)	290, 632
Bst6I	CTCTTC	2 cut(s)	198, 241
BstAPI	GCANNNNNTGC	1 cut(s)	1043
BstBAI	YACGTR	1 cut(s)	1054
BstC8I	GCNNGC	5 cut(s)	64, 82, 253, 670, 1039
BstDEI	CTNAG	5 cut(s)	30, 85, 95, 586, 1066
BstDSI	CCRYGG	2 cut(s)	286, 631
BstEII	GGTNACC	2 cut(s)	277, 827
BstF5I	GGATG	2 cut(s)	35, 735
BstFNI	CGCG	2 cut(s)	326, 653
BstH2I	RGCGCY	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	7 cut(s)	217, 234, 321, 346, 693, 715, 1072
BstMBI	GATC	7 cut(s)	214, 231, 318, 343, 690, 712, 1069
BstMCI	CGRYCG	1 cut(s)	693
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 411, 422, 806, 1043
BstNI	CCWGG	1 cut(s)	275
BstPAI	GACNNNNGTC	1 cut(s)	327
BstPI	GGTNACC	2 cut(s)	277, 827
BstSCI	CCNGG	2 cut(s)	273, 802
BstSFI	CTRYAG	1 cut(s)	9
BstUI	CGCG	2 cut(s)	326, 653
BstV1I	GCAGC	3 cut(s)	76, 784, 1033
BsuI	GTATCC	1 cut(s)	500
BsuRI	GGCC	4 cut(s)	617, 650, 756, 984
BtgI	CCRYGG	2 cut(s)	286, 631
BtsCI	GGATG	2 cut(s)	35, 735
BtsIMutI	CAGTG	1 cut(s)	521
BveI	ACCTGC	2 cut(s)	16, 508
Cac8I	GCNNGC	5 cut(s)	64, 82, 253, 670, 1039
CciI	TCATGA	1 cut(s)	46
CfoI	GCGC	1 cut(s)	416
Cfr13I	GGNCC	3 cut(s)	391, 628, 929
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	6 cut(s)	104, 115, 293, 408, 859, 920
CviAII	CATG	4 cut(s)	47, 619, 926, 1024
CviQI	GTAC	6 cut(s)	104, 115, 293, 408, 859, 920
DdeI	CTNAG	5 cut(s)	30, 85, 95, 586, 1066
DpnI	GATC	7 cut(s)	216, 233, 320, 345, 692, 714, 1071
DpnII	GATC	7 cut(s)	214, 231, 318, 343, 690, 712, 1069
EaeI	YGGCCR	1 cut(s)	648
Eam1104I	CTCTTC	2 cut(s)	198, 241
EarI	CTCTTC	2 cut(s)	198, 241
Ecl136II	GAGCTC	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	243
Eco32I	GATATC	1 cut(s)	909
Eco47I	GGWCC	3 cut(s)	391, 628, 929
Eco53kI	GAGCTC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	543
Eco91I	GGTNACC	2 cut(s)	277, 827
EcoICRI	GAGCTC	1 cut(s)	241
EcoO65I	GGTNACC	2 cut(s)	277, 827
EcoRI	GAATTC	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	273
EcoRV	GATATC	1 cut(s)	909
EcoT38I	GRGCYC	1 cut(s)	243
FaeI	CATG	4 cut(s)	50, 622, 929, 1027
FalI	AAGNNNNNCTT	2 cut(s)	1049, 1081
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	4 cut(s)	46, 618, 925, 1023
FauNDI	CATATG	1 cut(s)	1012
FbaI	TGATCA	2 cut(s)	214, 712
Fnu4HI	GCNGC	4 cut(s)	90, 651, 798, 1047
FokI	GGATG	2 cut(s)	22, 722
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	4 cut(s)	90, 651, 798, 1047
FspBI	CTAG	3 cut(s)	77, 938, 1084
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	4 cut(s)	90, 651, 798, 1047
GsuI	CTGGAG	1 cut(s)	545
HaeII	RGCGCY	1 cut(s)	417
HaeIII	GGCC	4 cut(s)	617, 650, 756, 984
HapII	CCGG	1 cut(s)	803
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	4 cut(s)	50, 622, 929, 1027
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HincII	GTYRAC	1 cut(s)	820
HindII	GTYRAC	1 cut(s)	820
HinfI	GANTC	1 cut(s)	1080
HpaI	GTTAAC	1 cut(s)	820
HpaII	CCGG	1 cut(s)	803
HphI	GGTGA	5 cut(s)	190, 289, 736, 802, 839
Hpy166II	GTNNAC	4 cut(s)	117, 293, 820, 889
Hpy188I	TCNGA	4 cut(s)	112, 245, 580, 1079
Hpy188III	TCNNGA	2 cut(s)	47, 212
Hpy8I	GTNNAC	4 cut(s)	117, 293, 820, 889
Hpy99I	CGWCG	2 cut(s)	326, 425
HpyAV	CCTTC	5 cut(s)	117, 358, 562, 942, 974
HpyCH4III	ACNGT	2 cut(s)	290, 632
HpyCH4IV	ACGT	2 cut(s)	420, 1053
HpyCH4V	TGCA	4 cut(s)	11, 62, 152, 838
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 411, 422, 806, 1043
HpyF3I	CTNAG	5 cut(s)	30, 85, 95, 586, 1066
HpySE526I	ACGT	2 cut(s)	420, 1053
Hsp92II	CATG	4 cut(s)	50, 622, 929, 1027
HspAI	GCGC	1 cut(s)	414
KpnI	GGTACC	1 cut(s)	411
Ksp22I	TGATCA	2 cut(s)	214, 712
KspAI	GTTAAC	1 cut(s)	820
Kzo9I	GATC	7 cut(s)	214, 231, 318, 343, 690, 712, 1069
LguI	GCTCTTC	2 cut(s)	198, 241
LmnI	GCTCC	4 cut(s)	238, 805, 806, 1027
Lsp1109I	GCAGC	3 cut(s)	76, 784, 1033
LweI	GCATC	3 cut(s)	44, 75, 139
MaeI	CTAG	3 cut(s)	77, 938, 1084
MaeII	ACGT	2 cut(s)	420, 1053
MaeIII	GTNAC	4 cut(s)	13, 277, 724, 827
MalI	GATC	7 cut(s)	216, 233, 320, 345, 692, 714, 1071
MboI	GATC	7 cut(s)	214, 231, 318, 343, 690, 712, 1069
MboII	GAAGA	4 cut(s)	185, 258, 262, 373
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	5 cut(s)	396, 479, 642, 655, 1019
MluI	ACGCGT	1 cut(s)	324
MmeI	TCCRAC	2 cut(s)	369, 573
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	2 cut(s)	26, 819
MslI	CAYNNNNRTG	1 cut(s)	1004
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	1 cut(s)	803
MspR9I	CCNGG	2 cut(s)	275, 804
Mva1269I	GAATGC	2 cut(s)	696, 799
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	2 cut(s)	326, 653
MwoI	GCNNNNNNNGC	5 cut(s)	86, 411, 422, 806, 1043
NciI	CCSGG	1 cut(s)	804
NdeI	CATATG	1 cut(s)	1012
NdeII	GATC	7 cut(s)	214, 231, 318, 343, 690, 712, 1069
NlaIII	CATG	4 cut(s)	50, 622, 929, 1027
NlaIV	GGNNCC	4 cut(s)	6, 393, 409, 629
NmuCI	GTSAC	3 cut(s)	277, 724, 827
PagI	TCATGA	1 cut(s)	46
PaqCI	CACCTGC	1 cut(s)	16
PciSI	GCTCTTC	2 cut(s)	198, 241
PctI	GAATGC	2 cut(s)	696, 799
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	1080
PflMI	CCANNNNNTGG	1 cut(s)	624
PfoI	TCCNGGA	1 cut(s)	802
PkrI	GCNGC	4 cut(s)	91, 652, 799, 1048
Ple19I	CGATCG	1 cut(s)	693
Ppu21I	YACGTR	1 cut(s)	1054
PshAI	GACNNNNGTC	1 cut(s)	327
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	273
PspEI	GGTNACC	2 cut(s)	277, 827
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	4 cut(s)	6, 393, 409, 629
PspPI	GGNCC	3 cut(s)	391, 628, 929
PstI	CTGCAG	1 cut(s)	13
PvuI	CGATCG	1 cut(s)	693
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	6 cut(s)	105, 116, 294, 409, 860, 921
RsaNI	GTAC	6 cut(s)	104, 115, 293, 408, 859, 920
RseI	CAYNNNNRTG	1 cut(s)	1004
SacI	GAGCTC	1 cut(s)	243
SapI	GCTCTTC	2 cut(s)	198, 241
SaqAI	TTAA	2 cut(s)	26, 819
SatI	GCNGC	4 cut(s)	90, 651, 798, 1047
Sau3AI	GATC	7 cut(s)	214, 231, 318, 343, 690, 712, 1069
Sau96I	GGNCC	3 cut(s)	391, 628, 929
ScrFI	CCNGG	2 cut(s)	275, 804
SduI	GDGCHC	1 cut(s)	243
SfaNI	GCATC	3 cut(s)	44, 75, 139
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	3 cut(s)	391, 628, 929
SmiMI	CAYNNNNRTG	1 cut(s)	1004
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	5 cut(s)	396, 479, 642, 655, 1019
SsiI	CCGC	2 cut(s)	405, 651
SspI	AATATT	1 cut(s)	564
SspMI	CTAG	3 cut(s)	77, 938, 1084
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	273, 802
TaaI	ACNGT	2 cut(s)	290, 632
TaiI	ACGT	2 cut(s)	423, 1056
TaqI	TCGA	2 cut(s)	234, 321
TasI	AATT	5 cut(s)	396, 479, 642, 655, 1019
TatI	WGTACW	2 cut(s)	114, 858
TauI	GCSGC	1 cut(s)	653
TfiI	GAWTC	1 cut(s)	1080
Tru1I	TTAA	2 cut(s)	26, 819
Tru9I	TTAA	2 cut(s)	26, 819
TscAI	CASTG	1 cut(s)	528
TseFI	GTSAC	3 cut(s)	277, 724, 827
TseI	GCWGC	3 cut(s)	89, 797, 1046
Tsp45I	GTSAC	3 cut(s)	277, 724, 827
TspDTI	ATGAA	6 cut(s)	12, 63, 153, 323, 635, 1012
TspGWI	ACGGA	1 cut(s)	732
TspRI	CASTG	1 cut(s)	528
Van91I	CCANNNNNTGG	1 cut(s)	624
VpaK11BI	GGWCC	3 cut(s)	391, 628, 929
XapI	RAATTY	3 cut(s)	479, 642, 1019
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	3 cut(s)	77, 938, 1084

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.