Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002403

Physical Location & Seq

Genomic Coordinates Forward (+)

54313283 .. 54314955

Gene Structure 1673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG458300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCACCCACAACAGCCAACGTTGCCGACGAAGCCAAAGTAGCAAACATCAAGACACTTACGGGCTCCGAACTCAACTCAGTACCGTCGGAGTACACCTACGTCAAGAACCCCAACGATCAAGCTGATGCAAGCGACCCAGAACACTCAATCCCCACCATCGATTTCGCCCAACTCACCTCCAGCTCCCCCGAACTCCGGTCCAAAGCCATTGAAGAGCTAGGCAGAGCTTGCCAGGAATGGGGCTTCTTTCAGGTGATCAACCACGGTGTGCCTGAGAGCCTGTTGAAATCGATGATCGAGGTATGCCACAAGTTCTTTGATCTTCCTGAGGAGGAGAAGAAGGAGTTCCAATCAAGGAAGCTGTTGGAGCCAATCAAGTGCGGGACAAGCTTTAACGTTGCGATCGACAAAGTTCGTCTGTGGAGGGATTTCCTCAAGGTCATAGCACACCCGGAGTTCCACTCACTCCACAAACCCGCTGATTACAGTGAGGTTTCATTGGAGTTCAGCAAACAAACTCGACAGGTTGCAACCGAATTGTTGAGCGGAATATCAGAGAGCTTGGGGTTGGAGGCCGAGTACATAGCCAAGGCCATGAACTGGGACCGGGGCCTACAAATCCTTGCCGCTAACTATTATCCGGCGTGTCCCCAGCCCGATCTAGCCATTGGAATTCCCCCTCACACCGATCACGGACTTGTCACTCTCCTTATTCAGAATGACATGGGTGGCCTTGAAGTGCAGCACAACGGCAAATGGGTCCTCGTTGATTGTGCTCCGGGTGCTTTTGTTGTTAACATTGGTGACCAAATGCAGATCTTGACTAATGATAAGTACAAGAGCGTATGGCATCGGGCAGTTGTGAACAACAGAGCTACAAGGATCTCCATAGCAGTACCACATGGACCTGCACTTGAGACTGCTGCTCTGCCAATCCCGGAGTTGTTGGGTGGCGAAGCACCAAAATACATCGGAATGTCATATGAAGAGTTCATGGAACTTCAGGCAAGCCCCGCGGCGTACATGATGCCTTGTTTAGATCACCTGCGAGTCAAGGCCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

355

Amino Acids

39.35

Weight (kDa)

5.21

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	51 - 160	1.3e-27	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	207 - 302	5.2e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38040 FvH4_5g38040 FvH4_5g38050
malus_domestica	MD05G1046000.v1.1 MD10G1052800.v1.1 MD10G1053000.v1.1 MD10G1053100.v1.1 MD10G1053200.v1.1
prunus_persica	Prupe.8G066500_v2.0.a1 Prupe.8G066600_v2.0.a1 Prupe.8G066600_v2.0.a1
pyrus_communis	pycom05g03830 pycom10g03780 pycom10g03830 pycom10g03910 pycom10g04020
rosa_chinensis	RchiOBHm_Chr6g0265671 RchiOBHm_Chr7g0239961 RchiOBHm_Chr7g0239991
rosa_laevigata	RLG00000000713 RLG00000000714 RLG00000014168
rosa_multiflora	Rmu_co8141760.1_g000001 Rmu_sc0000540.1_g000014 Rmu_sc0000540.1_g000017 Rmu_sc0006825.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220550 Rroxscaffold_3G00220590
rosa_rugosa	Rorug06G0018400 Rorug07G0331500
rosa_samantha	Rh6BG140400 Rh6CG137300 Rh6DG123800 Rh7AG485400 Rh7AG485500 Rh7BG458200 Rh7BG458300 Rh7CG502500 Rh7CG502700 Rh7DG470900 Rh7DG471000
rosa_wichuraiana	Rw7G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1056
Acc36I	ACCTGC	2 cut(s)	919, 1056
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	603
AccBSI	CCGCTC	1 cut(s)	549
AccII	CGCG	1 cut(s)	1019
AciI	CCGC	6 cut(s)	384, 480, 549, 630, 1017, 1019
AclI	AACGTT	2 cut(s)	21, 399
AclWI	GGATC	1 cut(s)	893
AcsI	RAATTY	1 cut(s)	675
AcuI	CTGAAG	1 cut(s)	989
AdeI	CACNNNGTG	1 cut(s)	271
AfaI	GTAC	6 cut(s)	84, 95, 584, 839, 900, 1025
AfiI	CCNNNNNNNGG	3 cut(s)	198, 241, 603
AgsI	TTSAA	3 cut(s)	215, 289, 740
AjnI	CCWGG	1 cut(s)	234
AloI	GAACNNNNNNTCC	2 cut(s)	135, 167
AluBI	AGCT	8 cut(s)	125, 186, 220, 230, 364, 393, 564, 878
AluI	AGCT	8 cut(s)	125, 186, 220, 230, 364, 393, 564, 878
Alw21I	GWGCWC	1 cut(s)	781
Alw26I	GTCTC	1 cut(s)	914
AlwI	GGATC	1 cut(s)	893
AoxI	GGCC	5 cut(s)	576, 594, 613, 733, 1059
ApeKI	GCWGC	2 cut(s)	745, 926
ApoI	RAATTY	1 cut(s)	675
Asp700I	GAANNNNTTC	1 cut(s)	347
AspS9I	GGNCC	5 cut(s)	201, 607, 613, 763, 908
AsuC2I	CCSGG	4 cut(s)	455, 611, 783, 941
AsuHPI	GGTGA	4 cut(s)	169, 268, 818, 1037
AvaII	GGWCC	4 cut(s)	201, 607, 763, 908
AxyI	CCTNAGG	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	781
BbvI	GCAGC	2 cut(s)	757, 913
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	769
BciT130I	CCWGG	1 cut(s)	236
BclI	TGATCA	1 cut(s)	258
BcnI	CCSGG	4 cut(s)	455, 611, 783, 941
BcoDI	GTCTC	1 cut(s)	914
BfaI	CTAG	2 cut(s)	221, 665
BfuAI	ACCTGC	2 cut(s)	919, 1056
BglII	AGATCT	1 cut(s)	819
BisI	GCNGC	4 cut(s)	630, 746, 927, 1020
BlsI	GCNGC	4 cut(s)	631, 747, 928, 1021
Bme1390I	CCNGG	5 cut(s)	236, 455, 611, 783, 941
Bme18I	GGWCC	4 cut(s)	201, 607, 763, 908
BmgT120I	GGNCC	5 cut(s)	201, 607, 613, 763, 908
BmiI	GGNNCC	6 cut(s)	6, 67, 372, 608, 614, 764
BmrFI	CCNGG	5 cut(s)	236, 455, 611, 783, 941
BmrI	ACTGGG	1 cut(s)	613
BmsI	GCATC	3 cut(s)	118, 862, 1020
BmuI	ACTGGG	1 cut(s)	613
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
BpmI	CTGGAG	1 cut(s)	166
BpuEI	CTTGAG	2 cut(s)	422, 938
BpuMI	CCSGG	4 cut(s)	455, 611, 783, 941
Bsa29I	ATCGAT	2 cut(s)	162, 293
BsaJI	CCNNGG	4 cut(s)	265, 591, 610, 1017
BsaWI	WCCGGW	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	566, 596
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 241, 603
Bse1I	ACTGG	1 cut(s)	608
Bse21I	CCTNAGG	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	236
BseCI	ATCGAT	2 cut(s)	162, 293
BseDI	CCNNGG	4 cut(s)	265, 591, 610, 1017
BseLI	CCNNNNNNNGG	3 cut(s)	198, 241, 603
BseMII	CTCAG	3 cut(s)	93, 267, 321
BseNI	ACTGG	1 cut(s)	608
BseRI	GAGGAG	2 cut(s)	347, 350
BseXI	GCAGC	2 cut(s)	757, 913
BseYI	CCCAGC	1 cut(s)	654
BsgI	GTGCAG	2 cut(s)	764, 897
Bsh1236I	CGCG	1 cut(s)	1019
Bsh1285I	CGRYCG	1 cut(s)	408
BshFI	GGCC	5 cut(s)	578, 596, 615, 735, 1061
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	2 cut(s)	162, 293
BsiEI	CGRYCG	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	781
BsiSI	CCGG	6 cut(s)	199, 455, 610, 644, 782, 941
BslFI	GGGAC	3 cut(s)	400, 620, 636
BslI	CCNNNNNNNGG	3 cut(s)	198, 241, 603
BsmAI	GTCTC	1 cut(s)	914
BsmFI	GGGAC	3 cut(s)	400, 620, 636
BsnI	GGCC	5 cut(s)	578, 596, 615, 735, 1061
Bsp1286I	GDGCHC	2 cut(s)	68, 781
BspACI	CCGC	6 cut(s)	384, 480, 549, 630, 1017, 1019
BspANI	GGCC	5 cut(s)	578, 596, 615, 735, 1061
BspCNI	CTCAG	3 cut(s)	92, 268, 322
BspDI	ATCGAT	2 cut(s)	162, 293
BspFNI	CGCG	1 cut(s)	1019
BspLI	GGNNCC	6 cut(s)	6, 67, 372, 608, 614, 764
BspMI	ACCTGC	2 cut(s)	919, 1056
BspPI	GGATC	1 cut(s)	893
BspQI	GCTCTTC	1 cut(s)	210
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	549
BsrI	ACTGG	1 cut(s)	608
BssECI	CCNNGG	4 cut(s)	265, 591, 610, 1017
BssT1I	CCWWGG	1 cut(s)	591
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	3 cut(s)	87, 269, 491
Bst6I	CTCTTC	2 cut(s)	210, 984
BstAPI	GCANNNNNTGC	1 cut(s)	231
BstC8I	GCNNGC	3 cut(s)	133, 232, 1012
BstDEI	CTNAG	3 cut(s)	79, 276, 330
BstDSI	CCRYGG	2 cut(s)	265, 1017
BstEII	GGTNACC	1 cut(s)	806
BstFNI	CGCG	1 cut(s)	1019
BstMAI	GTCTC	1 cut(s)	914
BstMCI	CGRYCG	1 cut(s)	408
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 32, 41, 231, 370, 390, 785, 1016
BstNI	CCWGG	1 cut(s)	236
BstPI	GGTNACC	1 cut(s)	806
BstSCI	CCNGG	5 cut(s)	234, 453, 609, 781, 939
BstUI	CGCG	1 cut(s)	1019
BstV1I	GCAGC	2 cut(s)	757, 913
BstX2I	RGATCY	2 cut(s)	819, 885
BstYI	RGATCY	2 cut(s)	819, 885
Bsu15I	ATCGAT	2 cut(s)	162, 293
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	5 cut(s)	578, 596, 615, 735, 1061
BsuTUI	ATCGAT	2 cut(s)	162, 293
BtgI	CCRYGG	2 cut(s)	265, 1017
BtsIMutI	CAGTG	1 cut(s)	496
BveI	ACCTGC	2 cut(s)	919, 1056
Cac8I	GCNNGC	3 cut(s)	133, 232, 1012
Cfr13I	GGNCC	5 cut(s)	201, 607, 613, 763, 908
Cfr42I	CCGCGG	1 cut(s)	1020
ClaI	ATCGAT	2 cut(s)	162, 293
Csp6I	GTAC	6 cut(s)	83, 94, 583, 838, 899, 1024
CviAII	CATG	5 cut(s)	598, 727, 905, 997, 1027
CviQI	GTAC	6 cut(s)	83, 94, 583, 838, 899, 1024
DdeI	CTNAG	3 cut(s)	79, 276, 330
DraIII	CACNNNGTG	1 cut(s)	271
Eam1104I	CTCTTC	2 cut(s)	210, 984
EarI	CTCTTC	2 cut(s)	210, 984
Eco130I	CCWWGG	1 cut(s)	591
Eco24I	GRGCYC	1 cut(s)	68
Eco47I	GGWCC	4 cut(s)	201, 607, 763, 908
Eco57I	CTGAAG	1 cut(s)	989
Eco81I	CCTNAGG	1 cut(s)	330
Eco91I	GGTNACC	1 cut(s)	806
EcoO109I	RGGNCCY	2 cut(s)	613, 763
EcoO65I	GGTNACC	1 cut(s)	806
EcoRI	GAATTC	1 cut(s)	675
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	591
EcoT38I	GRGCYC	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	5 cut(s)	601, 730, 908, 1000, 1030
FaqI	GGGAC	3 cut(s)	400, 620, 636
FatI	CATG	5 cut(s)	597, 726, 904, 996, 1026
FauI	CCCGC	3 cut(s)	377, 487, 1024
FauNDI	CATATG	1 cut(s)	985
FbaI	TGATCA	1 cut(s)	258
Fnu4HI	GCNGC	4 cut(s)	630, 746, 927, 1020
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	4 cut(s)	630, 746, 927, 1020
FspBI	CTAG	2 cut(s)	221, 665
GluI	GCNGC	4 cut(s)	630, 746, 927, 1020
GsaI	CCCAGC	1 cut(s)	658
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	5 cut(s)	578, 596, 615, 735, 1061
HapII	CCGG	6 cut(s)	199, 455, 610, 644, 782, 941
Hin1II	CATG	5 cut(s)	601, 730, 908, 1000, 1030
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	1 cut(s)	1053
HpaI	GTTAAC	1 cut(s)	799
HpaII	CCGG	6 cut(s)	199, 455, 610, 644, 782, 941
HphI	GGTGA	4 cut(s)	169, 268, 818, 1037
Hpy166II	GTNNAC	3 cut(s)	96, 799, 868
Hpy188I	TCNGA	5 cut(s)	70, 91, 559, 720, 977
Hpy188III	TCNNGA	4 cut(s)	52, 106, 329, 823
Hpy8I	GTNNAC	3 cut(s)	96, 799, 868
Hpy99I	CGWCG	2 cut(s)	32, 91
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	3 cut(s)	87, 269, 491
HpyCH4IV	ACGT	3 cut(s)	21, 102, 399
HpyCH4V	TGCA	5 cut(s)	131, 533, 745, 817, 914
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 32, 41, 231, 370, 390, 785, 1016
HpyF3I	CTNAG	3 cut(s)	79, 276, 330
HpySE526I	ACGT	3 cut(s)	21, 102, 399
Hsp92II	CATG	5 cut(s)	601, 730, 908, 1000, 1030
Ksp22I	TGATCA	1 cut(s)	258
KspAI	GTTAAC	1 cut(s)	799
KspI	CCGCGG	1 cut(s)	1020
LguI	GCTCTTC	1 cut(s)	210
LmnI	GCTCC	4 cut(s)	71, 191, 370, 784
Lsp1109I	GCAGC	2 cut(s)	757, 913
LweI	GCATC	3 cut(s)	118, 862, 1020
MaeI	CTAG	2 cut(s)	221, 665
MaeII	ACGT	3 cut(s)	21, 102, 399
MaeIII	GTNAC	2 cut(s)	703, 806
MbiI	CCGCTC	1 cut(s)	549
MboII	GAAGA	4 cut(s)	227, 317, 352, 1001
MflI	RGATCY	2 cut(s)	819, 885
MhlI	GDGCHC	2 cut(s)	68, 781
MluCI	AATT	2 cut(s)	539, 675
MlyI	GAGTC	1 cut(s)	1062
MmeI	TCCRAC	3 cut(s)	69, 348, 552
MroXI	GAANNNNTTC	1 cut(s)	347
MseI	TTAA	2 cut(s)	396, 798
MslI	CAYNNNNRTG	1 cut(s)	977
MspA1I	CMGCKG	2 cut(s)	482, 1019
MspI	CCGG	6 cut(s)	199, 455, 610, 644, 782, 941
MspR9I	CCNGG	5 cut(s)	236, 455, 611, 783, 941
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	1019
MwoI	GCNNNNNNNGC	8 cut(s)	23, 32, 41, 231, 370, 390, 785, 1016
NciI	CCSGG	4 cut(s)	455, 611, 783, 941
NdeI	CATATG	1 cut(s)	985
NlaIII	CATG	5 cut(s)	601, 730, 908, 1000, 1030
NlaIV	GGNNCC	6 cut(s)	6, 67, 372, 608, 614, 764
NmeAIII	GCCGAG	1 cut(s)	604
NmuCI	GTSAC	2 cut(s)	703, 806
PaqCI	CACCTGC	1 cut(s)	1056
PciSI	GCTCTTC	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 405
PdmI	GAANNNNTTC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	603
PfoI	TCCNGGA	1 cut(s)	939
PkrI	GCNGC	4 cut(s)	631, 747, 928, 1021
Ple19I	CGATCG	1 cut(s)	408
PleI	GAGTC	1 cut(s)	1061
PpsI	GAGTC	1 cut(s)	1061
PpuMI	RGGWCCY	1 cut(s)	763
Psp1406I	AACGTT	2 cut(s)	21, 399
Psp5II	RGGWCCY	1 cut(s)	763
Psp6I	CCWGG	1 cut(s)	234
PspEI	GGTNACC	1 cut(s)	806
PspFI	CCCAGC	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	6 cut(s)	6, 67, 372, 608, 614, 764
PspPI	GGNCC	5 cut(s)	201, 607, 613, 763, 908
PspPPI	RGGWCCY	1 cut(s)	763
PsuI	RGATCY	2 cut(s)	819, 885
PvuI	CGATCG	1 cut(s)	408
RsaI	GTAC	6 cut(s)	84, 95, 584, 839, 900, 1025
RsaNI	GTAC	6 cut(s)	83, 94, 583, 838, 899, 1024
RseI	CAYNNNNRTG	1 cut(s)	977
SacII	CCGCGG	1 cut(s)	1020
SapI	GCTCTTC	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	396, 798
SatI	GCNGC	4 cut(s)	630, 746, 927, 1020
Sau96I	GGNCC	5 cut(s)	201, 607, 613, 763, 908
SchI	GAGTC	1 cut(s)	1062
ScrFI	CCNGG	5 cut(s)	236, 455, 611, 783, 941
SduI	GDGCHC	2 cut(s)	68, 781
SfaNI	GCATC	3 cut(s)	118, 862, 1020
Sfr303I	CCGCGG	1 cut(s)	1020
SgrBI	CCGCGG	1 cut(s)	1020
SinI	GGWCC	4 cut(s)	201, 607, 763, 908
SmiMI	CAYNNNNRTG	1 cut(s)	977
SmlI	CTYRAG	2 cut(s)	437, 917
SmoI	CTYRAG	2 cut(s)	437, 917
Sse9I	AATT	2 cut(s)	539, 675
SsiI	CCGC	6 cut(s)	384, 480, 549, 630, 1017, 1019
SspMI	CTAG	2 cut(s)	221, 665
StyD4I	CCNGG	5 cut(s)	234, 453, 609, 781, 939
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	3 cut(s)	87, 269, 491
TaiI	ACGT	3 cut(s)	24, 105, 402
TaqI	TCGA	5 cut(s)	162, 293, 300, 408, 523
TasI	AATT	2 cut(s)	539, 675
TatI	WGTACW	3 cut(s)	93, 582, 837
TauI	GCSGC	2 cut(s)	632, 1022
Tru1I	TTAA	2 cut(s)	396, 798
Tru9I	TTAA	2 cut(s)	396, 798
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	2 cut(s)	703, 806
TseI	GCWGC	2 cut(s)	745, 926
Tsp45I	GTSAC	2 cut(s)	703, 806
TspDTI	ATGAA	4 cut(s)	489, 614, 985, 1002
TspGWI	ACGGA	1 cut(s)	711
TspRI	CASTG	1 cut(s)	496
Van91I	CCANNNNNTGG	1 cut(s)	603
VpaK11BI	GGWCC	4 cut(s)	201, 607, 763, 908
XapI	RAATTY	1 cut(s)	675
XmnI	GAANNNNTTC	1 cut(s)	347
XspI	CTAG	2 cut(s)	221, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.