Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002403

Physical Location & Seq

Genomic Coordinates Reverse (-)

4196255 .. 4197544

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g03910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCACCTACCGTGACTTCAGTGGATGCATCTGAACCCAAGGTAGCAAGCATCAAAACCTTAGCCGACTCAGATGCTCTCACTTCTGTACCTTCCGAGTACGCCTACATCATGAATCCCAACGATAAGGGAGATGCAAACGACCCTGAACACTCAATCCCCATCATTGATTTTGCTCTTCTCACCTCTGCCTCCCCAGATGAACGGGCACAAATGATCGATAAGCTAGGAAAAGCTTGCCAAGAATGGGGCTTCTTTCAGGTGATCAACCATGGTGTACCAGAGAGCCTAATGAAAGAAATGATCGATGCGTGCCGAAGATTTTTTGAGCTGCCGGAAGAGGAGAAGAAGGAGTTCCATACAAAGAACCTGTTGGACCCAATCAAGTGCGGCACCAGCTTCAACGTCGCAATTGACAAAGTTCGTCTCTGGAGGGATTATCTCAAGGTCATCGCACACCCCAAATTCAACTCACTCTACAAACCTGCTGGGTACAGTGAAGTTTCATTGGAGTTCAGCAAAAGAACCCGTGCAGTGGCAACCGAAATATTGAATGGAATATCGGAGAGTTTGGGACTGGAGGCCGATTACATTACCAAGGCCATGAACTGGGATCGGGGCTGCCAAATTCTGGCAGCGAACTACTACCCAGCTTGCCCACAGCCCGACCTGGCGATCGGTATTCCTCCTCATACAGATCATGGACTGGTGACGCTCCTGATTCAGAATGATATGTGTGGCCTTGAAGTCAAGCACAATGATCAGTGGGTCTTGGTGAATGCCGCTCCGGGCGCTTTTATTGTTAACGTTGGTGATCAAATGCAAATTCTAACAAACGGCAAGTACAAGAGCATATGGCATCGAGCAACTGTGAACAACACAGCTACTAGAATATCGATCGCCGTACCACATGGACCGGCACTCGACACGCCCGCTGTACCGATCCCGGAGTTGCTAGAAAAGGAAGGTGAAAAAGCGAAATACATCGGAATGACGTATGAGAAATTCATGGAACTTCAGGCAAGCCCCGCTGCCTACATGATGCCTTGCTTGGATCACCTGCGGGTCAAGGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

360

Amino Acids

39.88

Weight (kDa)

5.34

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38040 FvH4_5g38040 FvH4_5g38050
malus_domestica	MD05G1046000.v1.1 MD10G1052800.v1.1 MD10G1053000.v1.1 MD10G1053100.v1.1 MD10G1053200.v1.1
prunus_persica	Prupe.8G066500_v2.0.a1 Prupe.8G066600_v2.0.a1 Prupe.8G066600_v2.0.a1
pyrus_communis	pycom05g03830 pycom10g03780 pycom10g03830 pycom10g03910 pycom10g04020
rosa_chinensis	RchiOBHm_Chr6g0265671 RchiOBHm_Chr7g0239961 RchiOBHm_Chr7g0239991
rosa_laevigata	RLG00000000713 RLG00000000714 RLG00000014168
rosa_multiflora	Rmu_co8141760.1_g000001 Rmu_sc0000540.1_g000014 Rmu_sc0000540.1_g000017 Rmu_sc0006825.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220550 Rroxscaffold_3G00220590
rosa_rugosa	Rorug06G0018400 Rorug07G0331500
rosa_samantha	Rh6BG140400 Rh6CG137300 Rh6DG123800 Rh7AG485400 Rh7AG485500 Rh7BG458200 Rh7BG458300 Rh7CG502500 Rh7CG502700 Rh7DG470900 Rh7DG471000
rosa_wichuraiana	Rw7G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1068
Acc36I	ACCTGC	2 cut(s)	493, 1068
AccB1I	GGYRCC	2 cut(s)	4, 392
AccB7I	CCANNNNNTGG	2 cut(s)	609, 631
AccBSI	CCGCTC	1 cut(s)	785
AciI	CCGC	5 cut(s)	390, 783, 933, 1029, 1063
AclI	AACGTT	1 cut(s)	807
AclWI	GGATC	3 cut(s)	621, 937, 1062
AcsI	RAATTY	4 cut(s)	464, 627, 825, 1004
AcuI	CTGAAG	1 cut(s)	1001
AfaI	GTAC	7 cut(s)	90, 101, 279, 494, 845, 906, 939
AfiI	CCNNNNNNNGG	4 cut(s)	247, 535, 609, 631
AgsI	TTSAA	4 cut(s)	403, 469, 553, 746
AjnI	CCWGG	1 cut(s)	669
AloI	GAACNNNNNNTCC	2 cut(s)	141, 173
AluBI	AGCT	6 cut(s)	226, 236, 331, 399, 653, 884
AluI	AGCT	6 cut(s)	226, 236, 331, 399, 653, 884
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	3 cut(s)	621, 937, 1062
AoxI	GGCC	3 cut(s)	582, 600, 739
ApeKI	GCWGC	4 cut(s)	331, 621, 635, 1031
ApoI	RAATTY	4 cut(s)	464, 627, 825, 1004
Asp700I	GAANNNNTTC	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	794
AspS9I	GGNCC	2 cut(s)	376, 914
AsuC2I	CCSGG	2 cut(s)	789, 947
AsuHPI	GGTGA	7 cut(s)	175, 274, 721, 787, 824, 980, 1049
AvaII	GGWCC	2 cut(s)	376, 914
BaeGI	GKGCMC	1 cut(s)	211
BaeI	ACNNNNGTAYC	2 cut(s)	72, 105
BanI	GGYRCC	2 cut(s)	4, 392
BbvI	GCAGC	4 cut(s)	318, 608, 647, 1018
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	2 cut(s)	853, 887
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	1 cut(s)	671
BclI	TGATCA	3 cut(s)	264, 760, 814
BcnI	CCSGG	2 cut(s)	789, 947
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	3 cut(s)	227, 888, 956
BfoI	RGCGCY	1 cut(s)	795
BfuAI	ACCTGC	2 cut(s)	493, 1068
BisI	GCNGC	6 cut(s)	332, 391, 622, 636, 783, 1032
BlsI	GCNGC	6 cut(s)	333, 392, 623, 637, 784, 1033
Bme1390I	CCNGG	3 cut(s)	671, 789, 947
Bme18I	GGWCC	2 cut(s)	376, 914
BmgT120I	GGNCC	2 cut(s)	376, 914
BmiI	GGNNCC	3 cut(s)	6, 378, 394
BmrFI	CCNGG	3 cut(s)	671, 789, 947
BmrI	ACTGGG	1 cut(s)	619
BmsI	GCATC	8 cut(s)	16, 38, 60, 64, 124, 298, 868, 1032
BmuI	ACTGGG	1 cut(s)	619
BpmI	CTGGAG	2 cut(s)	451, 599
Bpu10I	CCTNAGC	1 cut(s)	61
BpuEI	CTTGAG	1 cut(s)	428
BpuMI	CCSGG	2 cut(s)	789, 947
Bsa29I	ATCGAT	3 cut(s)	219, 306, 896
BsaJI	CCNNGG	3 cut(s)	39, 271, 597
Bsc4I	CCNNNNNNNGG	4 cut(s)	247, 535, 609, 631
Bse118I	RCCGGY	1 cut(s)	916
Bse1I	ACTGG	3 cut(s)	582, 614, 711
BseBI	CCWGG	1 cut(s)	671
BseCI	ATCGAT	3 cut(s)	219, 306, 896
BseDI	CCNNGG	3 cut(s)	39, 271, 597
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	4 cut(s)	247, 535, 609, 631
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	3 cut(s)	582, 614, 711
BseRI	GAGGAG	2 cut(s)	356, 678
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	4 cut(s)	318, 608, 647, 1018
BseYI	CCCAGC	2 cut(s)	488, 649
BsgI	GTGCAG	1 cut(s)	552
Bsh1285I	CGRYCG	2 cut(s)	678, 900
BshFI	GGCC	3 cut(s)	584, 602, 741
BshNI	GGYRCC	2 cut(s)	4, 392
BshVI	ATCGAT	3 cut(s)	219, 306, 896
BsiEI	CGRYCG	2 cut(s)	678, 900
BsiSI	CCGG	4 cut(s)	335, 788, 917, 947
BslFI	GGGAC	1 cut(s)	588
BslI	CCNNNNNNNGG	4 cut(s)	247, 535, 609, 631
BsmAI	GTCTC	1 cut(s)	431
BsmBI	CGTCTC	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	588
BsmI	GAATGC	1 cut(s)	784
BsnI	GGCC	3 cut(s)	584, 602, 741
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp19I	CCATGG	1 cut(s)	271
BspACI	CCGC	5 cut(s)	390, 783, 933, 1029, 1063
BspANI	GGCC	3 cut(s)	584, 602, 741
BspCNI	CTCAG	1 cut(s)	83
BspDI	ATCGAT	3 cut(s)	219, 306, 896
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	6, 378, 394
BspMI	ACCTGC	2 cut(s)	493, 1068
BspPI	GGATC	3 cut(s)	621, 937, 1062
BspQI	GCTCTTC	1 cut(s)	183
BspT107I	GGYRCC	2 cut(s)	4, 392
BsrBI	CCGCTC	1 cut(s)	785
BsrFI	RCCGGY	1 cut(s)	916
BsrI	ACTGG	3 cut(s)	582, 614, 711
BssAI	RCCGGY	1 cut(s)	916
BssECI	CCNNGG	3 cut(s)	39, 271, 597
BssT1I	CCWWGG	3 cut(s)	39, 271, 597
Bst2UI	CCWGG	1 cut(s)	671
Bst4CI	ACNGT	3 cut(s)	13, 497, 871
Bst6I	CTCTTC	2 cut(s)	183, 333
BstC8I	GCNNGC	6 cut(s)	49, 238, 313, 655, 933, 1024
BstDEI	CTNAG	2 cut(s)	61, 70
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	31
BstH2I	RGCGCY	1 cut(s)	795
BstHHI	GCGC	1 cut(s)	794
BstMAI	GTCTC	1 cut(s)	431
BstMCI	CGRYCG	2 cut(s)	678, 900
BstMWI	GCNNNNNNNGC	3 cut(s)	396, 791, 1028
BstNI	CCWGG	1 cut(s)	671
BstSCI	CCNGG	3 cut(s)	669, 787, 945
BstSLI	GKGCMC	1 cut(s)	211
BstV1I	GCAGC	4 cut(s)	318, 608, 647, 1018
Bsu15I	ATCGAT	3 cut(s)	219, 306, 896
BsuRI	GGCC	3 cut(s)	584, 602, 741
BsuTUI	ATCGAT	3 cut(s)	219, 306, 896
BtgI	CCRYGG	1 cut(s)	271
BtgZI	GCGATG	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	4 cut(s)	27, 502, 540, 770
BveI	ACCTGC	2 cut(s)	493, 1068
Cac8I	GCNNGC	6 cut(s)	49, 238, 313, 655, 933, 1024
CciI	TCATGA	1 cut(s)	111
CfoI	GCGC	1 cut(s)	794
Cfr10I	RCCGGY	1 cut(s)	916
Cfr13I	GGNCC	2 cut(s)	376, 914
ClaI	ATCGAT	3 cut(s)	219, 306, 896
CseI	GACGC	1 cut(s)	721
Csp6I	GTAC	7 cut(s)	89, 100, 278, 493, 844, 905, 938
CviAII	CATG	7 cut(s)	112, 272, 604, 701, 911, 1009, 1039
CviQI	GTAC	7 cut(s)	89, 100, 278, 493, 844, 905, 938
DdeI	CTNAG	2 cut(s)	61, 70
Eam1104I	CTCTTC	2 cut(s)	183, 333
EarI	CTCTTC	2 cut(s)	183, 333
Eco130I	CCWWGG	3 cut(s)	39, 271, 597
Eco47I	GGWCC	2 cut(s)	376, 914
Eco57I	CTGAAG	1 cut(s)	1001
EcoRII	CCWGG	1 cut(s)	669
EcoT14I	CCWWGG	3 cut(s)	39, 271, 597
EcoT22I	ATGCAT	1 cut(s)	31
ErhI	CCWWGG	3 cut(s)	39, 271, 597
Esp3I	CGTCTC	1 cut(s)	431
FaeI	CATG	7 cut(s)	115, 275, 607, 704, 914, 1012, 1042
FaqI	GGGAC	1 cut(s)	588
FatI	CATG	7 cut(s)	111, 271, 603, 700, 910, 1008, 1038
FauI	CCCGC	3 cut(s)	940, 1036, 1056
FauNDI	CATATG	1 cut(s)	854
FbaI	TGATCA	3 cut(s)	264, 760, 814
Fnu4HI	GCNGC	6 cut(s)	332, 391, 622, 636, 783, 1032
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	6 cut(s)	332, 391, 622, 636, 783, 1032
FspBI	CTAG	3 cut(s)	227, 888, 956
GlaI	GCGC	1 cut(s)	793
GluI	GCNGC	6 cut(s)	332, 391, 622, 636, 783, 1032
GsaI	CCCAGC	2 cut(s)	492, 653
GsuI	CTGGAG	2 cut(s)	451, 599
HaeII	RGCGCY	1 cut(s)	795
HaeIII	GGCC	3 cut(s)	584, 602, 741
HapII	CCGG	4 cut(s)	335, 788, 917, 947
HgaI	GACGC	1 cut(s)	721
HhaI	GCGC	1 cut(s)	794
Hin1II	CATG	7 cut(s)	115, 275, 607, 704, 914, 1012, 1042
Hin6I	GCGC	1 cut(s)	792
HinP1I	GCGC	1 cut(s)	792
HincII	GTYRAC	1 cut(s)	805
HindII	GTYRAC	1 cut(s)	805
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	3 cut(s)	68, 115, 721
HpaI	GTTAAC	1 cut(s)	805
HpaII	CCGG	4 cut(s)	335, 788, 917, 947
HphI	GGTGA	7 cut(s)	175, 274, 721, 787, 824, 980, 1049
Hpy166II	GTNNAC	3 cut(s)	278, 805, 874
Hpy188I	TCNGA	6 cut(s)	34, 73, 97, 565, 726, 989
Hpy188III	TCNNGA	3 cut(s)	112, 430, 718
Hpy8I	GTNNAC	3 cut(s)	278, 805, 874
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	3 cut(s)	102, 343, 959
HpyCH4III	ACNGT	3 cut(s)	13, 497, 871
HpyCH4IV	ACGT	3 cut(s)	405, 807, 995
HpyCH4V	TGCA	4 cut(s)	29, 137, 533, 823
HpyF10VI	GCNNNNNNNGC	3 cut(s)	396, 791, 1028
HpyF3I	CTNAG	2 cut(s)	61, 70
HpySE526I	ACGT	3 cut(s)	405, 807, 995
Hsp92II	CATG	7 cut(s)	115, 275, 607, 704, 914, 1012, 1042
HspAI	GCGC	1 cut(s)	792
Ksp22I	TGATCA	3 cut(s)	264, 760, 814
KspAI	GTTAAC	1 cut(s)	805
LguI	GCTCTTC	1 cut(s)	183
LmnI	GCTCC	2 cut(s)	720, 790
Lsp1109I	GCAGC	4 cut(s)	318, 608, 647, 1018
LweI	GCATC	8 cut(s)	16, 38, 60, 64, 124, 298, 868, 1032
MaeI	CTAG	3 cut(s)	227, 888, 956
MaeII	ACGT	3 cut(s)	405, 807, 995
MaeIII	GTNAC	2 cut(s)	13, 709
MbiI	CCGCTC	1 cut(s)	785
MboII	GAAGA	4 cut(s)	170, 330, 350, 358
MfeI	CAATTG	2 cut(s)	411, 1075
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	6 cut(s)	411, 464, 627, 825, 1004, 1075
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	7 cut(s)	196, 202, 334, 426, 574, 696, 699
Mph1103I	ATGCAT	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	1 cut(s)	804
MslI	CAYNNNNRTG	1 cut(s)	989
MspA1I	CMGCKG	2 cut(s)	935, 1031
MspI	CCGG	4 cut(s)	335, 788, 917, 947
MspR9I	CCNGG	3 cut(s)	671, 789, 947
MunI	CAATTG	2 cut(s)	411, 1075
Mva1269I	GAATGC	1 cut(s)	784
MvaI	CCWGG	1 cut(s)	671
MwoI	GCNNNNNNNGC	3 cut(s)	396, 791, 1028
NciI	CCSGG	2 cut(s)	789, 947
NcoI	CCATGG	1 cut(s)	271
NdeI	CATATG	1 cut(s)	854
NlaIII	CATG	7 cut(s)	115, 275, 607, 704, 914, 1012, 1042
NlaIV	GGNNCC	3 cut(s)	6, 378, 394
NmuCI	GTSAC	2 cut(s)	13, 709
NsiI	ATGCAT	1 cut(s)	31
PagI	TCATGA	1 cut(s)	111
PaqCI	CACCTGC	1 cut(s)	1068
PciSI	GCTCTTC	1 cut(s)	183
PctI	GAATGC	1 cut(s)	784
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	115, 721
PflMI	CCANNNNNTGG	2 cut(s)	609, 631
PfoI	TCCNGGA	1 cut(s)	945
PkrI	GCNGC	6 cut(s)	333, 392, 623, 637, 784, 1033
Ple19I	CGATCG	2 cut(s)	678, 900
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp1406I	AACGTT	1 cut(s)	807
Psp6I	CCWGG	1 cut(s)	669
PspFI	CCCAGC	2 cut(s)	488, 649
PspGI	CCWGG	1 cut(s)	669
PspN4I	GGNNCC	3 cut(s)	6, 378, 394
PspPI	GGNCC	2 cut(s)	376, 914
PvuI	CGATCG	2 cut(s)	678, 900
RsaI	GTAC	7 cut(s)	90, 101, 279, 494, 845, 906, 939
RsaNI	GTAC	7 cut(s)	89, 100, 278, 493, 844, 905, 938
RseI	CAYNNNNRTG	1 cut(s)	989
SapI	GCTCTTC	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	804
SatI	GCNGC	6 cut(s)	332, 391, 622, 636, 783, 1032
Sau96I	GGNCC	2 cut(s)	376, 914
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	3 cut(s)	671, 789, 947
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	8 cut(s)	16, 38, 60, 64, 124, 298, 868, 1032
SinI	GGWCC	2 cut(s)	376, 914
SmiMI	CAYNNNNRTG	1 cut(s)	989
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	6 cut(s)	411, 464, 627, 825, 1004, 1075
SsiI	CCGC	5 cut(s)	390, 783, 933, 1029, 1063
SspI	AATATT	1 cut(s)	549
SspMI	CTAG	3 cut(s)	227, 888, 956
StyD4I	CCNGG	3 cut(s)	669, 787, 945
StyI	CCWWGG	3 cut(s)	39, 271, 597
TaaI	ACNGT	3 cut(s)	13, 497, 871
TaiI	ACGT	3 cut(s)	408, 810, 998
TaqI	TCGA	5 cut(s)	219, 306, 862, 896, 924
TasI	AATT	6 cut(s)	411, 464, 627, 825, 1004, 1075
TatI	WGTACW	1 cut(s)	843
TauI	GCSGC	2 cut(s)	393, 785
TfiI	GAWTC	2 cut(s)	115, 721
Tru1I	TTAA	1 cut(s)	804
Tru9I	TTAA	1 cut(s)	804
TscAI	CASTG	4 cut(s)	27, 502, 540, 770
TseFI	GTSAC	2 cut(s)	13, 709
TseI	GCWGC	4 cut(s)	331, 621, 635, 1031
Tsp45I	GTSAC	2 cut(s)	13, 709
TspDTI	ATGAA	6 cut(s)	128, 216, 308, 495, 620, 997
TspRI	CASTG	4 cut(s)	27, 502, 540, 770
Van91I	CCANNNNNTGG	2 cut(s)	609, 631
VpaK11BI	GGWCC	2 cut(s)	376, 914
XapI	RAATTY	4 cut(s)	464, 627, 825, 1004
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	3 cut(s)	227, 888, 956
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.