Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002403

Physical Location & Seq

Genomic Coordinates Forward (+)

67985333 .. 67987355

Gene Structure 2023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG502500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCACCTACAACAACCACCGTTGCCGACGAAGCCAAAGTAGCAAGCATCAAGACACTTACCGACGCCGGTGCTGAACTCAACTCCGTACCATCGGAGTACACTTATGTCAAGGACCCCAACGATCAAGCTGATGCCAGTGACCCAGAGCACTCTATCCCCACCATCGATTTCGCTCATCTCACCTCCAGCTCCCCCGATCTCCGGTCCAAGGCCATTGAAAAGCTTGGCAAAGCTTGCGAGGAATGGGGCTTCTTTCAGGTTATCAACCATGGTGTACCTGAGAGCCTGATGAAATCGATGATAGAGGCGTGCCACAAGTTTTTTCAGCTTCCTGAGGAGGAGAAGAAGGAGTTCCAATCAAGGAAACTATTGGAACCAATCAAGTGTGGGACAAGCTTTAACGTTGCGATCGACAAAGTTCGTCTGTGGAGGGATTACCTCAAGGTCATAGCACATCCCGAGTTCCACTCACTCCACAAACCCGCTGAGTACAGCCACGTTTCATTGGAGTTCAGCAAACAAACTCGACAAGTCGCAACCGAATTGTTGAGCGGAATATCAGAGAGCTTGGGGTTGGAGGCCGAGTACATAGCCAAGGCCATGAACTGGGACCGGGGCCTACAAATCCTCGCCGCTAACTATTATCCGGCGTGTCCACAGCCCGATCTAGCCATTGGAATTCCCCCTCACACCGATCACGGACTTGTCACTCTCCTTATTCAGAATGACATGGGTGGCCTTGAAGTCCAGCACAATGGTAAGTGGGTGCTCGTTGATTGTGCTCCGGGTGCTTTTGTTGTTAACATCGGTGACCAAATGCAGATCTTGACTAATGATAAGTACAAGAGCGTCTGGCATCGAGCAGTTGTGAACAACAGAGCTACAAGGATCTCCATAGCCGTACCACATGGACCTGCACTTGAGACTGCTGCTCTGCCAATCCCGGAGTTGTTGGGTGGCGAAGCACCAAAATACATCGGAATGTCCTATGAAGCATTCATGGAACTTCAGGCTAGCCCTGCGGCTTACATGATGCCTTGCTTAGATCACCTGAGAGTCAAAGCCGATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

358

Amino Acids

39.56

Weight (kDa)

5.45

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	53 - 163	1.4e-27	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	209 - 304	5.3e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38040 FvH4_5g38040 FvH4_5g38050
malus_domestica	MD05G1046000.v1.1 MD10G1052800.v1.1 MD10G1053000.v1.1 MD10G1053100.v1.1 MD10G1053200.v1.1
prunus_persica	Prupe.8G066500_v2.0.a1 Prupe.8G066600_v2.0.a1 Prupe.8G066600_v2.0.a1
pyrus_communis	pycom05g03830 pycom10g03780 pycom10g03830 pycom10g03910 pycom10g04020
rosa_chinensis	RchiOBHm_Chr6g0265671 RchiOBHm_Chr7g0239961 RchiOBHm_Chr7g0239991
rosa_laevigata	RLG00000000713 RLG00000000714 RLG00000014168
rosa_multiflora	Rmu_co8141760.1_g000001 Rmu_sc0000540.1_g000014 Rmu_sc0000540.1_g000017 Rmu_sc0006825.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220550 Rroxscaffold_3G00220590
rosa_rugosa	Rorug06G0018400 Rorug07G0331500
rosa_samantha	Rh6BG140400 Rh6CG137300 Rh6DG123800 Rh7AG485400 Rh7AG485500 Rh7BG458200 Rh7BG458300 Rh7CG502500 Rh7CG502700 Rh7DG470900 Rh7DG471000
rosa_wichuraiana	Rw7G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	925
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	609
AccBSI	CCGCTC	1 cut(s)	555
AciI	CCGC	4 cut(s)	486, 555, 636, 1025
AclI	AACGTT	1 cut(s)	405
AclWI	GGATC	1 cut(s)	899
AcsI	RAATTY	1 cut(s)	681
AcuI	CTGAAG	1 cut(s)	995
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	7 cut(s)	90, 101, 279, 494, 590, 845, 906
AfiI	CCNNNNNNNGG	3 cut(s)	204, 211, 609
AgsI	TTSAA	2 cut(s)	221, 746
AluBI	AGCT	8 cut(s)	131, 192, 226, 236, 331, 399, 570, 884
AluI	AGCT	8 cut(s)	131, 192, 226, 236, 331, 399, 570, 884
Alw21I	GWGCWC	3 cut(s)	153, 774, 787
Alw26I	GTCTC	1 cut(s)	920
AlwI	GGATC	1 cut(s)	899
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	5 cut(s)	213, 582, 600, 619, 739
ApeKI	GCWGC	1 cut(s)	932
ApoI	RAATTY	1 cut(s)	681
Asp700I	GAANNNNTTC	1 cut(s)	353
AspS9I	GGNCC	5 cut(s)	115, 207, 613, 619, 914
AsuC2I	CCSGG	3 cut(s)	617, 789, 947
AsuHPI	GGTGA	3 cut(s)	175, 824, 1043
AsuNHI	GCTAGC	1 cut(s)	1016
AvaI	CYCGRG	1 cut(s)	461
AvaII	GGWCC	4 cut(s)	115, 207, 613, 914
AxyI	CCTNAGG	1 cut(s)	336
BanI	GGYRCC	1 cut(s)	4
Bbv12I	GWGCWC	3 cut(s)	153, 774, 787
BbvI	GCAGC	1 cut(s)	919
BccI	CCATC	2 cut(s)	100, 173
BceAI	ACGGC	1 cut(s)	887
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BcnI	CCSGG	3 cut(s)	617, 789, 947
BcoDI	GTCTC	1 cut(s)	920
BfaI	CTAG	2 cut(s)	671, 1017
BfuAI	ACCTGC	1 cut(s)	925
BglII	AGATCT	1 cut(s)	825
BisI	GCNGC	3 cut(s)	636, 933, 1026
BlsI	GCNGC	3 cut(s)	637, 934, 1027
Bme1390I	CCNGG	3 cut(s)	617, 789, 947
Bme18I	GGWCC	4 cut(s)	115, 207, 613, 914
BmeT110I	CYCGRG	1 cut(s)	461
BmgT120I	GGNCC	5 cut(s)	115, 207, 613, 619, 914
BmiI	GGNNCC	5 cut(s)	6, 117, 378, 614, 620
BmrFI	CCNGG	3 cut(s)	617, 789, 947
BmrI	ACTGGG	1 cut(s)	619
BmsI	GCATC	4 cut(s)	57, 124, 868, 1026
BmtI	GCTAGC	1 cut(s)	1020
BmuI	ACTGGG	1 cut(s)	619
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
BpmI	CTGGAG	1 cut(s)	172
BpuEI	CTTGAG	2 cut(s)	428, 944
BpuMI	CCSGG	3 cut(s)	617, 789, 947
Bsa29I	ATCGAT	2 cut(s)	168, 299
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	4 cut(s)	210, 271, 597, 616
BsaWI	WCCGGW	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 211, 609
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	2 cut(s)	138, 614
Bse21I	CCTNAGG	1 cut(s)	336
BseCI	ATCGAT	2 cut(s)	168, 299
BseDI	CCNNGG	4 cut(s)	210, 271, 597, 616
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	3 cut(s)	204, 211, 609
BseMII	CTCAG	4 cut(s)	273, 327, 480, 1046
BseNI	ACTGG	2 cut(s)	138, 614
BseRI	GAGGAG	2 cut(s)	353, 356
BseXI	GCAGC	1 cut(s)	919
BsgI	GTGCAG	1 cut(s)	903
Bsh1285I	CGRYCG	1 cut(s)	414
BshFI	GGCC	5 cut(s)	215, 584, 602, 621, 741
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	2 cut(s)	168, 299
BsiEI	CGRYCG	1 cut(s)	414
BsiHKAI	GWGCWC	3 cut(s)	153, 774, 787
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	6 cut(s)	69, 205, 616, 650, 788, 947
BslFI	GGGAC	2 cut(s)	406, 626
BslI	CCNNNNNNNGG	3 cut(s)	204, 211, 609
BsmAI	GTCTC	1 cut(s)	920
BsmFI	GGGAC	2 cut(s)	406, 626
BsmI	GAATGC	1 cut(s)	998
BsnI	GGCC	5 cut(s)	215, 584, 602, 621, 741
BsoBI	CYCGRG	1 cut(s)	461
Bsp1286I	GDGCHC	3 cut(s)	153, 774, 787
Bsp143I	GATC	8 cut(s)	124, 199, 411, 667, 697, 825, 891, 1048
Bsp19I	CCATGG	1 cut(s)	271
BspACI	CCGC	4 cut(s)	486, 555, 636, 1025
BspANI	GGCC	5 cut(s)	215, 584, 602, 621, 741
BspCNI	CTCAG	4 cut(s)	274, 328, 481, 1047
BspDI	ATCGAT	2 cut(s)	168, 299
BspLI	GGNNCC	5 cut(s)	6, 117, 378, 614, 620
BspMI	ACCTGC	1 cut(s)	925
BspOI	GCTAGC	1 cut(s)	1020
BspPI	GGATC	1 cut(s)	899
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	555
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	138, 614
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	4 cut(s)	210, 271, 597, 616
BssMI	GATC	8 cut(s)	124, 199, 411, 667, 697, 825, 891, 1048
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	3 cut(s)	210, 271, 597
Bst4CI	ACNGT	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	237
BstC8I	GCNNGC	4 cut(s)	46, 238, 313, 1018
BstDEI	CTNAG	5 cut(s)	282, 336, 489, 1045, 1055
BstDSI	CCRYGG	1 cut(s)	271
BstEII	GGTNACC	1 cut(s)	812
BstF5I	GGATG	1 cut(s)	457
BstKTI	GATC	8 cut(s)	127, 202, 414, 670, 700, 828, 894, 1051
BstMAI	GTCTC	1 cut(s)	920
BstMBI	GATC	8 cut(s)	124, 199, 411, 667, 697, 825, 891, 1048
BstMCI	CGRYCG	1 cut(s)	414
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 41, 237, 791, 1022
BstPI	GGTNACC	1 cut(s)	812
BstSCI	CCNGG	3 cut(s)	615, 787, 945
BstV1I	GCAGC	1 cut(s)	919
BstX2I	RGATCY	2 cut(s)	825, 891
BstXI	CCANNNNNNTGG	1 cut(s)	758
BstYI	RGATCY	2 cut(s)	825, 891
Bsu15I	ATCGAT	2 cut(s)	168, 299
Bsu36I	CCTNAGG	1 cut(s)	336
BsuRI	GGCC	5 cut(s)	215, 584, 602, 621, 741
BsuTUI	ATCGAT	2 cut(s)	168, 299
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	145
BveI	ACCTGC	1 cut(s)	925
Cac8I	GCNNGC	4 cut(s)	46, 238, 313, 1018
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	5 cut(s)	115, 207, 613, 619, 914
ClaI	ATCGAT	2 cut(s)	168, 299
CseI	GACGC	2 cut(s)	74, 841
Csp6I	GTAC	7 cut(s)	89, 100, 278, 493, 589, 844, 905
CviAII	CATG	6 cut(s)	272, 604, 733, 911, 1003, 1033
CviQI	GTAC	7 cut(s)	89, 100, 278, 493, 589, 844, 905
DdeI	CTNAG	5 cut(s)	282, 336, 489, 1045, 1055
DpnI	GATC	8 cut(s)	126, 201, 413, 669, 699, 827, 893, 1050
DpnII	GATC	8 cut(s)	124, 199, 411, 667, 697, 825, 891, 1048
Eco130I	CCWWGG	3 cut(s)	210, 271, 597
Eco47I	GGWCC	4 cut(s)	115, 207, 613, 914
Eco57I	CTGAAG	1 cut(s)	995
Eco81I	CCTNAGG	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	461
Eco91I	GGTNACC	1 cut(s)	812
EcoO109I	RGGNCCY	2 cut(s)	115, 619
EcoO65I	GGTNACC	1 cut(s)	812
EcoRI	GAATTC	1 cut(s)	681
EcoT14I	CCWWGG	3 cut(s)	210, 271, 597
ErhI	CCWWGG	3 cut(s)	210, 271, 597
FaeI	CATG	6 cut(s)	275, 607, 736, 914, 1006, 1036
FaqI	GGGAC	2 cut(s)	406, 626
FatI	CATG	6 cut(s)	271, 603, 732, 910, 1002, 1032
FauI	CCCGC	1 cut(s)	493
Fnu4HI	GCNGC	3 cut(s)	636, 933, 1026
FokI	GGATG	1 cut(s)	444
Fsp4HI	GCNGC	3 cut(s)	636, 933, 1026
FspBI	CTAG	2 cut(s)	671, 1017
GluI	GCNGC	3 cut(s)	636, 933, 1026
GsuI	CTGGAG	1 cut(s)	172
HaeIII	GGCC	5 cut(s)	215, 584, 602, 621, 741
HapII	CCGG	6 cut(s)	69, 205, 616, 650, 788, 947
HgaI	GACGC	2 cut(s)	74, 841
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	6 cut(s)	275, 607, 736, 914, 1006, 1036
HincII	GTYRAC	1 cut(s)	805
HindII	GTYRAC	1 cut(s)	805
HindIII	AAGCTT	3 cut(s)	224, 234, 397
HinfI	GANTC	1 cut(s)	1059
HpaI	GTTAAC	1 cut(s)	805
HpaII	CCGG	6 cut(s)	69, 205, 616, 650, 788, 947
HphI	GGTGA	3 cut(s)	175, 824, 1043
Hpy166II	GTNNAC	5 cut(s)	102, 278, 659, 805, 874
Hpy188I	TCNGA	4 cut(s)	97, 565, 726, 983
Hpy188III	TCNNGA	4 cut(s)	52, 335, 461, 829
Hpy8I	GTNNAC	5 cut(s)	102, 278, 659, 805, 874
Hpy99I	CGWCG	2 cut(s)	32, 68
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	2 cut(s)	405, 501
HpyCH4V	TGCA	2 cut(s)	823, 920
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 41, 237, 791, 1022
HpyF3I	CTNAG	5 cut(s)	282, 336, 489, 1045, 1055
HpySE526I	ACGT	2 cut(s)	405, 501
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	6 cut(s)	275, 607, 736, 914, 1006, 1036
KspAI	GTTAAC	1 cut(s)	805
Kzo9I	GATC	8 cut(s)	124, 199, 411, 667, 697, 825, 891, 1048
LmnI	GCTCC	2 cut(s)	197, 790
Lsp1109I	GCAGC	1 cut(s)	919
LweI	GCATC	4 cut(s)	57, 124, 868, 1026
MaeI	CTAG	2 cut(s)	671, 1017
MaeII	ACGT	2 cut(s)	405, 501
MaeIII	GTNAC	3 cut(s)	140, 709, 812
MalI	GATC	8 cut(s)	126, 201, 413, 669, 699, 827, 893, 1050
MbiI	CCGCTC	1 cut(s)	555
MboI	GATC	8 cut(s)	124, 199, 411, 667, 697, 825, 891, 1048
MboII	GAAGA	1 cut(s)	358
MflI	RGATCY	2 cut(s)	825, 891
MhlI	GDGCHC	3 cut(s)	153, 774, 787
MluCI	AATT	2 cut(s)	545, 681
MlyI	GAGTC	1 cut(s)	1068
MmeI	TCCRAC	1 cut(s)	558
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	2 cut(s)	402, 804
MslI	CAYNNNNRTG	1 cut(s)	983
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	6 cut(s)	69, 205, 616, 650, 788, 947
MspR9I	CCNGG	3 cut(s)	617, 789, 947
Mva1269I	GAATGC	1 cut(s)	998
MwoI	GCNNNNNNNGC	5 cut(s)	32, 41, 237, 791, 1022
NciI	CCSGG	3 cut(s)	617, 789, 947
NcoI	CCATGG	1 cut(s)	271
NdeII	GATC	8 cut(s)	124, 199, 411, 667, 697, 825, 891, 1048
NheI	GCTAGC	1 cut(s)	1016
NlaIII	CATG	6 cut(s)	275, 607, 736, 914, 1006, 1036
NlaIV	GGNNCC	5 cut(s)	6, 117, 378, 614, 620
NmeAIII	GCCGAG	1 cut(s)	610
NmuCI	GTSAC	3 cut(s)	140, 709, 812
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PctI	GAATGC	1 cut(s)	998
PdmI	GAANNNNTTC	1 cut(s)	353
PflMI	CCANNNNNTGG	1 cut(s)	609
PfoI	TCCNGGA	1 cut(s)	945
PkrI	GCNGC	3 cut(s)	637, 934, 1027
Ple19I	CGATCG	1 cut(s)	414
PleI	GAGTC	1 cut(s)	1067
PpsI	GAGTC	1 cut(s)	1067
PpuMI	RGGWCCY	1 cut(s)	115
Psp1406I	AACGTT	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	115
PspEI	GGTNACC	1 cut(s)	812
PspN4I	GGNNCC	5 cut(s)	6, 117, 378, 614, 620
PspPI	GGNCC	5 cut(s)	115, 207, 613, 619, 914
PspPPI	RGGWCCY	1 cut(s)	115
PsuI	RGATCY	2 cut(s)	825, 891
PvuI	CGATCG	1 cut(s)	414
RsaI	GTAC	7 cut(s)	90, 101, 279, 494, 590, 845, 906
RsaNI	GTAC	7 cut(s)	89, 100, 278, 493, 589, 844, 905
RseI	CAYNNNNRTG	1 cut(s)	983
SaqAI	TTAA	2 cut(s)	402, 804
SatI	GCNGC	3 cut(s)	636, 933, 1026
Sau3AI	GATC	8 cut(s)	124, 199, 411, 667, 697, 825, 891, 1048
Sau96I	GGNCC	5 cut(s)	115, 207, 613, 619, 914
SchI	GAGTC	1 cut(s)	1068
ScrFI	CCNGG	3 cut(s)	617, 789, 947
SduI	GDGCHC	3 cut(s)	153, 774, 787
SfaNI	GCATC	4 cut(s)	57, 124, 868, 1026
SgrAI	CRCCGGYG	1 cut(s)	68
SinI	GGWCC	4 cut(s)	115, 207, 613, 914
SmiMI	CAYNNNNRTG	1 cut(s)	983
SmlI	CTYRAG	2 cut(s)	443, 923
SmoI	CTYRAG	2 cut(s)	443, 923
Sse9I	AATT	2 cut(s)	545, 681
SsiI	CCGC	4 cut(s)	486, 555, 636, 1025
SspMI	CTAG	2 cut(s)	671, 1017
StyD4I	CCNGG	3 cut(s)	615, 787, 945
StyI	CCWWGG	3 cut(s)	210, 271, 597
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	2 cut(s)	408, 504
TaqI	TCGA	5 cut(s)	168, 299, 414, 529, 862
TasI	AATT	2 cut(s)	545, 681
TatI	WGTACW	4 cut(s)	99, 492, 588, 843
TauI	GCSGC	2 cut(s)	638, 1028
Tru1I	TTAA	2 cut(s)	402, 804
Tru9I	TTAA	2 cut(s)	402, 804
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	3 cut(s)	140, 709, 812
TseI	GCWGC	1 cut(s)	932
Tsp45I	GTSAC	3 cut(s)	140, 709, 812
TspDTI	ATGAA	5 cut(s)	308, 495, 620, 991, 1008
TspGWI	ACGGA	2 cut(s)	76, 717
TspRI	CASTG	1 cut(s)	145
Van91I	CCANNNNNTGG	1 cut(s)	609
VpaK11BI	GGWCC	4 cut(s)	115, 207, 613, 914
XapI	RAATTY	1 cut(s)	681
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	2 cut(s)	671, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.