Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002403

Physical Location & Seq

Genomic Coordinates Reverse (-)

2875763 .. 2876950

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00220550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCACCCACAACAGCCAACGTTGCCGACGAAGCCAAAGTAGCAAACATCAAGACACTTACGGGCTCCGAACTCAACTCAGTACCGTCGGAGTACACCTACGTCAAGAACCCCAACGATCAAGCTGATGCAAGCGACCCAGAACACTCAATCCCCACCATCGATTTCGCCCAACTCACCTCCAGCTCCCCCGAACTCCGGTCCAAAGCCATTGAAGAGCTAGGCAGAGCTTGCCAGGAATGGGGCTTCTTTCAGGTGATCAACCACGGTGTGCCTGAGAGCCTGTTGAAGTCGATGATCGAGGCATGCCACAAGTTCTTTGATCTTCCTGAGGAGGAGAAGAAGGAGTTCCAATCAAGGAAGCTGTTGGAGCCAATCAAGTGCGGGACAAGCTTTAACGTTGCGATCGACAAAGTTCGTCTGTGGAGGGATTACCTCAAGGTCATAGCACATCCCGAGTTCCACTCACTCCACAAACCCGCTGAGTACAGCGACGTTTCATTGGAGTTCAGCAAACAAACTCGACAAGTCGCAACCGAATTGTTGAGCGGAATATCAGAGAGCTTGGGGTTGGAGGCTGAGTACATAGCCAAGGCCATGAACTGGGACCGTGGCCTACAAATCCTCGCCGCTAACTATTATCCCGCGTTGCAGCACAACGGCAAATGGGTCCTCGTTGATTGTGCTCCGGGTGCTTTTGTTGTTAACATCGGTGACCAAATGCAGATATTGACTAATGATAAGTACAAGAGCGTATGGCATCGGGCAGTTGTGAACAACAGAGCTACAAGGATCTCCATAGCAGTACCACATGGACCTGCACTTGACACTGCTGCTCTGCCAATCCCGGAGTTGTTGGGTGGCGAAGCACCAAAATACATCGGAATGTCCTATGAAGAGTTCATGGAACTTCAGGCAAGCCCCGCGGCGTACATGATGCCTTGTTTAGATCACCTGCGAGTCAAGGCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

324

Amino Acids

36.09

Weight (kDa)

5.36

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	51 - 160	1.5e-27	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	218 - 271	9.7e-15	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38040 FvH4_5g38040 FvH4_5g38050
malus_domestica	MD05G1046000.v1.1 MD10G1052800.v1.1 MD10G1053000.v1.1 MD10G1053100.v1.1 MD10G1053200.v1.1
prunus_persica	Prupe.8G066500_v2.0.a1 Prupe.8G066600_v2.0.a1 Prupe.8G066600_v2.0.a1
pyrus_communis	pycom05g03830 pycom10g03780 pycom10g03830 pycom10g03910 pycom10g04020
rosa_chinensis	RchiOBHm_Chr6g0265671 RchiOBHm_Chr7g0239961 RchiOBHm_Chr7g0239991
rosa_laevigata	RLG00000000713 RLG00000000714 RLG00000014168
rosa_multiflora	Rmu_co8141760.1_g000001 Rmu_sc0000540.1_g000014 Rmu_sc0000540.1_g000017 Rmu_sc0006825.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220550 Rroxscaffold_3G00220590
rosa_rugosa	Rorug06G0018400 Rorug07G0331500
rosa_samantha	Rh6BG140400 Rh6CG137300 Rh6DG123800 Rh7AG485400 Rh7AG485500 Rh7BG458200 Rh7BG458300 Rh7CG502500 Rh7CG502700 Rh7DG470900 Rh7DG471000
rosa_wichuraiana	Rw7G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	963
Acc36I	ACCTGC	2 cut(s)	826, 963
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	603
AccBSI	CCGCTC	1 cut(s)	549
AccII	CGCG	2 cut(s)	647, 926
AciI	CCGC	7 cut(s)	384, 480, 549, 630, 645, 924, 926
AclI	AACGTT	2 cut(s)	21, 399
AclWI	GGATC	1 cut(s)	800
AcuI	CTGAAG	1 cut(s)	896
AdeI	CACNNNGTG	1 cut(s)	271
AfaI	GTAC	7 cut(s)	84, 95, 488, 584, 746, 807, 932
AfiI	CCNNNNNNNGG	3 cut(s)	198, 241, 603
AgsI	TTSAA	2 cut(s)	215, 289
AjnI	CCWGG	1 cut(s)	234
AloI	GAACNNNNNNTCC	2 cut(s)	135, 167
AluBI	AGCT	8 cut(s)	125, 186, 220, 230, 364, 393, 564, 785
AluI	AGCT	8 cut(s)	125, 186, 220, 230, 364, 393, 564, 785
Alw21I	GWGCWC	1 cut(s)	688
AlwI	GGATC	1 cut(s)	800
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	3 cut(s)	594, 613, 966
ApeKI	GCWGC	2 cut(s)	652, 833
Asp700I	GAANNNNTTC	1 cut(s)	347
AspS9I	GGNCC	4 cut(s)	201, 607, 670, 815
AsuC2I	CCSGG	2 cut(s)	690, 848
AsuHPI	GGTGA	4 cut(s)	169, 268, 725, 944
AvaI	CYCGRG	1 cut(s)	455
AvaII	GGWCC	4 cut(s)	201, 607, 670, 815
AxyI	CCTNAGG	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	688
BbvI	GCAGC	2 cut(s)	664, 820
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	676
BciT130I	CCWGG	1 cut(s)	236
BclI	TGATCA	1 cut(s)	258
BcnI	CCSGG	2 cut(s)	690, 848
BfaI	CTAG	1 cut(s)	221
BfuAI	ACCTGC	2 cut(s)	826, 963
BisI	GCNGC	4 cut(s)	630, 653, 834, 927
BlsI	GCNGC	4 cut(s)	631, 654, 835, 928
Bme1390I	CCNGG	3 cut(s)	236, 690, 848
Bme18I	GGWCC	4 cut(s)	201, 607, 670, 815
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	4 cut(s)	201, 607, 670, 815
BmiI	GGNNCC	5 cut(s)	6, 67, 372, 608, 671
BmrFI	CCNGG	3 cut(s)	236, 690, 848
BmrI	ACTGGG	1 cut(s)	613
BmsI	GCATC	3 cut(s)	118, 769, 927
BmuI	ACTGGG	1 cut(s)	613
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
BpmI	CTGGAG	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	2 cut(s)	690, 848
Bsa29I	ATCGAT	1 cut(s)	162
BsaJI	CCNNGG	4 cut(s)	265, 591, 610, 924
BsaWI	WCCGGW	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	566, 596
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 241, 603
Bse1I	ACTGG	1 cut(s)	608
Bse21I	CCTNAGG	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	236
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	4 cut(s)	265, 591, 610, 924
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	3 cut(s)	198, 241, 603
BseMII	CTCAG	5 cut(s)	93, 267, 321, 474, 570
BseNI	ACTGG	1 cut(s)	608
BseRI	GAGGAG	2 cut(s)	347, 350
BseXI	GCAGC	2 cut(s)	664, 820
BsgI	GTGCAG	1 cut(s)	804
Bsh1236I	CGCG	2 cut(s)	647, 926
Bsh1285I	CGRYCG	1 cut(s)	408
BshFI	GGCC	3 cut(s)	596, 615, 968
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	162
BsiEI	CGRYCG	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	688
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	3 cut(s)	199, 689, 848
BslFI	GGGAC	2 cut(s)	400, 620
BslI	CCNNNNNNNGG	3 cut(s)	198, 241, 603
BsmFI	GGGAC	2 cut(s)	400, 620
BsnI	GGCC	3 cut(s)	596, 615, 968
BsoBI	CYCGRG	1 cut(s)	455
Bsp1286I	GDGCHC	2 cut(s)	68, 688
Bsp143I	GATC	7 cut(s)	118, 258, 297, 322, 405, 792, 949
BspACI	CCGC	7 cut(s)	384, 480, 549, 630, 645, 924, 926
BspANI	GGCC	3 cut(s)	596, 615, 968
BspCNI	CTCAG	5 cut(s)	92, 268, 322, 475, 571
BspDI	ATCGAT	1 cut(s)	162
BspFNI	CGCG	2 cut(s)	647, 926
BspLI	GGNNCC	5 cut(s)	6, 67, 372, 608, 671
BspMI	ACCTGC	2 cut(s)	826, 963
BspPI	GGATC	1 cut(s)	800
BspQI	GCTCTTC	1 cut(s)	210
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	549
BsrI	ACTGG	1 cut(s)	608
BssECI	CCNNGG	4 cut(s)	265, 591, 610, 924
BssMI	GATC	7 cut(s)	118, 258, 297, 322, 405, 792, 949
BssT1I	CCWWGG	1 cut(s)	591
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	3 cut(s)	87, 269, 611
Bst6I	CTCTTC	2 cut(s)	210, 891
BstAPI	GCANNNNNTGC	1 cut(s)	231
BstC8I	GCNNGC	4 cut(s)	133, 232, 307, 919
BstDEI	CTNAG	5 cut(s)	79, 276, 330, 483, 579
BstDSI	CCRYGG	3 cut(s)	265, 610, 924
BstEII	GGTNACC	1 cut(s)	713
BstF5I	GGATG	1 cut(s)	451
BstFNI	CGCG	2 cut(s)	647, 926
BstKTI	GATC	7 cut(s)	121, 261, 300, 325, 408, 795, 952
BstMBI	GATC	7 cut(s)	118, 258, 297, 322, 405, 792, 949
BstMCI	CGRYCG	1 cut(s)	408
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 32, 41, 231, 370, 390, 692, 923
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	309
BstPI	GGTNACC	1 cut(s)	713
BstSCI	CCNGG	3 cut(s)	234, 688, 846
BstUI	CGCG	2 cut(s)	647, 926
BstV1I	GCAGC	2 cut(s)	664, 820
BstX2I	RGATCY	1 cut(s)	792
BstYI	RGATCY	1 cut(s)	792
Bsu15I	ATCGAT	1 cut(s)	162
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	3 cut(s)	596, 615, 968
BsuTUI	ATCGAT	1 cut(s)	162
BtgI	CCRYGG	3 cut(s)	265, 610, 924
BtsCI	GGATG	1 cut(s)	451
BtsI	GCAGTG	1 cut(s)	828
BtsIMutI	CAGTG	1 cut(s)	828
BveI	ACCTGC	2 cut(s)	826, 963
Cac8I	GCNNGC	4 cut(s)	133, 232, 307, 919
Cfr13I	GGNCC	4 cut(s)	201, 607, 670, 815
Cfr42I	CCGCGG	1 cut(s)	927
ClaI	ATCGAT	1 cut(s)	162
Csp6I	GTAC	7 cut(s)	83, 94, 487, 583, 745, 806, 931
CviAII	CATG	5 cut(s)	306, 598, 812, 904, 934
CviQI	GTAC	7 cut(s)	83, 94, 487, 583, 745, 806, 931
DdeI	CTNAG	5 cut(s)	79, 276, 330, 483, 579
DpnI	GATC	7 cut(s)	120, 260, 299, 324, 407, 794, 951
DpnII	GATC	7 cut(s)	118, 258, 297, 322, 405, 792, 949
DraIII	CACNNNGTG	1 cut(s)	271
Eam1104I	CTCTTC	2 cut(s)	210, 891
EarI	CTCTTC	2 cut(s)	210, 891
Eco130I	CCWWGG	1 cut(s)	591
Eco24I	GRGCYC	1 cut(s)	68
Eco47I	GGWCC	4 cut(s)	201, 607, 670, 815
Eco57I	CTGAAG	1 cut(s)	896
Eco81I	CCTNAGG	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	455
Eco91I	GGTNACC	1 cut(s)	713
EcoO109I	RGGNCCY	1 cut(s)	670
EcoO65I	GGTNACC	1 cut(s)	713
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	591
EcoT38I	GRGCYC	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	5 cut(s)	309, 601, 815, 907, 937
FaqI	GGGAC	2 cut(s)	400, 620
FatI	CATG	5 cut(s)	305, 597, 811, 903, 933
FauI	CCCGC	4 cut(s)	377, 487, 652, 931
FbaI	TGATCA	1 cut(s)	258
Fnu4HI	GCNGC	4 cut(s)	630, 653, 834, 927
FokI	GGATG	1 cut(s)	438
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	4 cut(s)	630, 653, 834, 927
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	4 cut(s)	630, 653, 834, 927
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	3 cut(s)	596, 615, 968
HapII	CCGG	3 cut(s)	199, 689, 848
Hin1II	CATG	5 cut(s)	309, 601, 815, 907, 937
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	1 cut(s)	960
HpaI	GTTAAC	1 cut(s)	706
HpaII	CCGG	3 cut(s)	199, 689, 848
HphI	GGTGA	4 cut(s)	169, 268, 725, 944
Hpy166II	GTNNAC	3 cut(s)	96, 706, 775
Hpy188I	TCNGA	4 cut(s)	70, 91, 559, 884
Hpy188III	TCNNGA	4 cut(s)	52, 106, 329, 455
Hpy8I	GTNNAC	3 cut(s)	96, 706, 775
Hpy99I	CGWCG	3 cut(s)	32, 91, 497
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	3 cut(s)	87, 269, 611
HpyCH4IV	ACGT	4 cut(s)	21, 102, 399, 495
HpyCH4V	TGCA	4 cut(s)	131, 652, 724, 821
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 32, 41, 231, 370, 390, 692, 923
HpyF3I	CTNAG	5 cut(s)	79, 276, 330, 483, 579
HpySE526I	ACGT	4 cut(s)	21, 102, 399, 495
Hsp92II	CATG	5 cut(s)	309, 601, 815, 907, 937
Ksp22I	TGATCA	1 cut(s)	258
KspAI	GTTAAC	1 cut(s)	706
KspI	CCGCGG	1 cut(s)	927
Kzo9I	GATC	7 cut(s)	118, 258, 297, 322, 405, 792, 949
LguI	GCTCTTC	1 cut(s)	210
LmnI	GCTCC	4 cut(s)	71, 191, 370, 691
Lsp1109I	GCAGC	2 cut(s)	664, 820
LweI	GCATC	3 cut(s)	118, 769, 927
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	4 cut(s)	21, 102, 399, 495
MaeIII	GTNAC	1 cut(s)	713
MalI	GATC	7 cut(s)	120, 260, 299, 324, 407, 794, 951
MbiI	CCGCTC	1 cut(s)	549
MboI	GATC	7 cut(s)	118, 258, 297, 322, 405, 792, 949
MboII	GAAGA	4 cut(s)	227, 317, 352, 908
MflI	RGATCY	1 cut(s)	792
MhlI	GDGCHC	2 cut(s)	68, 688
MluCI	AATT	1 cut(s)	539
MlyI	GAGTC	1 cut(s)	969
MmeI	TCCRAC	3 cut(s)	69, 348, 552
MnlI	CCTC	9 cut(s)	190, 295, 325, 328, 420, 446, 568, 635, 683
MroXI	GAANNNNTTC	1 cut(s)	347
MseI	TTAA	2 cut(s)	396, 705
MslI	CAYNNNNRTG	1 cut(s)	884
MspA1I	CMGCKG	2 cut(s)	482, 926
MspI	CCGG	3 cut(s)	199, 689, 848
MspR9I	CCNGG	3 cut(s)	236, 690, 848
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	2 cut(s)	647, 926
MwoI	GCNNNNNNNGC	8 cut(s)	23, 32, 41, 231, 370, 390, 692, 923
NciI	CCSGG	2 cut(s)	690, 848
NdeII	GATC	7 cut(s)	118, 258, 297, 322, 405, 792, 949
NlaIII	CATG	5 cut(s)	309, 601, 815, 907, 937
NlaIV	GGNNCC	5 cut(s)	6, 67, 372, 608, 671
NmuCI	GTSAC	1 cut(s)	713
NspI	RCATGY	1 cut(s)	309
PaeI	GCATGC	1 cut(s)	309
PaqCI	CACCTGC	1 cut(s)	963
PciSI	GCTCTTC	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 405
PdmI	GAANNNNTTC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	603
PfoI	TCCNGGA	1 cut(s)	846
PkrI	GCNGC	4 cut(s)	631, 654, 835, 928
Ple19I	CGATCG	1 cut(s)	408
PleI	GAGTC	1 cut(s)	968
PpsI	GAGTC	1 cut(s)	968
PpuMI	RGGWCCY	1 cut(s)	670
Psp1406I	AACGTT	2 cut(s)	21, 399
Psp5II	RGGWCCY	1 cut(s)	670
Psp6I	CCWGG	1 cut(s)	234
PspEI	GGTNACC	1 cut(s)	713
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	5 cut(s)	6, 67, 372, 608, 671
PspPI	GGNCC	4 cut(s)	201, 607, 670, 815
PspPPI	RGGWCCY	1 cut(s)	670
PsuI	RGATCY	1 cut(s)	792
PvuI	CGATCG	1 cut(s)	408
RsaI	GTAC	7 cut(s)	84, 95, 488, 584, 746, 807, 932
RsaNI	GTAC	7 cut(s)	83, 94, 487, 583, 745, 806, 931
RseI	CAYNNNNRTG	1 cut(s)	884
SacII	CCGCGG	1 cut(s)	927
SapI	GCTCTTC	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	396, 705
SatI	GCNGC	4 cut(s)	630, 653, 834, 927
Sau3AI	GATC	7 cut(s)	118, 258, 297, 322, 405, 792, 949
Sau96I	GGNCC	4 cut(s)	201, 607, 670, 815
SchI	GAGTC	1 cut(s)	969
ScrFI	CCNGG	3 cut(s)	236, 690, 848
SduI	GDGCHC	2 cut(s)	68, 688
SfaNI	GCATC	3 cut(s)	118, 769, 927
Sfr303I	CCGCGG	1 cut(s)	927
SgrBI	CCGCGG	1 cut(s)	927
SinI	GGWCC	4 cut(s)	201, 607, 670, 815
SmiMI	CAYNNNNRTG	1 cut(s)	884
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
SphI	GCATGC	1 cut(s)	309
Sse9I	AATT	1 cut(s)	539
SsiI	CCGC	7 cut(s)	384, 480, 549, 630, 645, 924, 926
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	3 cut(s)	234, 688, 846
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	3 cut(s)	87, 269, 611
TaiI	ACGT	4 cut(s)	24, 105, 402, 498
TaqI	TCGA	5 cut(s)	162, 293, 300, 408, 523
TasI	AATT	1 cut(s)	539
TatI	WGTACW	4 cut(s)	93, 486, 582, 744
TauI	GCSGC	2 cut(s)	632, 929
Tru1I	TTAA	2 cut(s)	396, 705
Tru9I	TTAA	2 cut(s)	396, 705
TscAI	CASTG	1 cut(s)	835
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	2 cut(s)	652, 833
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	4 cut(s)	489, 614, 892, 909
TspRI	CASTG	1 cut(s)	835
Van91I	CCANNNNNTGG	1 cut(s)	603
VpaK11BI	GGWCC	4 cut(s)	201, 607, 670, 815
XceI	RCATGY	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	347
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.