Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002403

Physical Location & Seq

Genomic Coordinates Reverse (-)

22359157 .. 22360923

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG140400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCACCTACAACAGCCAACGTTGCCGAGGAAACCAAAGTAGCAAGCATCAAGACACTTACGGGCTCCGAACTCAATTCCGTACCGTCGGAGTACACGTACGTCAAGAACCCGAACGATCAAGCTGATGCCAGCGACCCAGAGCACTCAATCCCCACCATCGATTTCGCCCAACTCACCTCCTGCTCCCCCGAACTCCGGTCCAAAGCCATCGAAGAGCTAGGCAGAGCTTGCCGGGAATGGGGCTTCTTTCAGGTGATCAACCACGGCGTACCTGAGAACTTGATGAAATCCATGATCGAGGTGTGCCACAAGTTCTTTGATCTTCCTGAGGAGGAGAAGAAGGAGTTCCAATCAAGGAAGCTATTGGAACCAATCAAGTGCGGAACAAGCTTTAACGTTGCGATCGACAAAGTTCGTCTGTGGAGGGATTTCCTCAAGGTCATAGCACATCCCGAGTTCCACTCACTCCACAAACCCGCCGATTACAGTGAGGTTTCGTTGGAGTTCAGCAAACAAACTCGACAAGTTGCAACCGAATTGTTGAGTGGAATATCAGAGAGCTTGGGGTTGGAGGCCGAGTACATAGCCAAGGCCATGAACTGGGACCGTGGCCTACAAATCCTCGCCGCTAACTATTATCCGGCGTGTCCACAGCCCGATCAAGCCATCGGAATCCCCCCTCACACCGATCACGGACTTGTGACTCTCCTTATTCAGAATGACATGGGTGGCCTTGAAGTCCAGCACAACGGAAAGTGGGTGCTGGTTAATTGTGCTCCGGGTGCTTTTGTTGTTAACATCGGGGACCAAATGCAGATCTTGACTAATGATAAGTACAAAAGCGTATGGCATCGGGCAGTTGTGAACAACAGAGCTACAAGGATCTCCATAGCAGTACCACATGGACCTGCACTTGACACGGCTGCTCTACCAATTCAGGAGTTGTTGGGTGGCGAAGCTCCAAAATACATCGGAATGTCATATGAAGAGTTCATGGAACTTCAGGCAAGCCCCGCGGCGTACATGATGCCTTGTTTAGATCACCTGCGAGTTAAGGCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

355

Amino Acids

39.49

Weight (kDa)

5.35

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	51 - 160	1.4e-27	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	207 - 302	6.2e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38040 FvH4_5g38040 FvH4_5g38050
malus_domestica	MD05G1046000.v1.1 MD10G1052800.v1.1 MD10G1053000.v1.1 MD10G1053100.v1.1 MD10G1053200.v1.1
prunus_persica	Prupe.8G066500_v2.0.a1 Prupe.8G066600_v2.0.a1 Prupe.8G066600_v2.0.a1
pyrus_communis	pycom05g03830 pycom10g03780 pycom10g03830 pycom10g03910 pycom10g04020
rosa_chinensis	RchiOBHm_Chr6g0265671 RchiOBHm_Chr7g0239961 RchiOBHm_Chr7g0239991
rosa_laevigata	RLG00000000713 RLG00000000714 RLG00000014168
rosa_multiflora	Rmu_co8141760.1_g000001 Rmu_sc0000540.1_g000014 Rmu_sc0000540.1_g000017 Rmu_sc0006825.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220550 Rroxscaffold_3G00220590
rosa_rugosa	Rorug06G0018400 Rorug07G0331500
rosa_samantha	Rh6BG140400 Rh6CG137300 Rh6DG123800 Rh7AG485400 Rh7AG485500 Rh7BG458200 Rh7BG458300 Rh7CG502500 Rh7CG502700 Rh7DG470900 Rh7DG471000
rosa_wichuraiana	Rw7G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1056
Acc36I	ACCTGC	2 cut(s)	919, 1056
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	603
AccII	CGCG	1 cut(s)	1019
AciI	CCGC	5 cut(s)	384, 480, 630, 1017, 1019
AclI	AACGTT	2 cut(s)	21, 399
AclWI	GGATC	1 cut(s)	893
AcuI	CTGAAG	1 cut(s)	989
AfaI	GTAC	8 cut(s)	84, 95, 101, 273, 584, 839, 900, 1025
AfiI	CCNNNNNNNGG	3 cut(s)	198, 241, 603
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	740
AluBI	AGCT	8 cut(s)	125, 220, 230, 364, 393, 564, 878, 962
AluI	AGCT	8 cut(s)	125, 220, 230, 364, 393, 564, 878, 962
Alw21I	GWGCWC	2 cut(s)	147, 781
AlwI	GGATC	1 cut(s)	893
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	4 cut(s)	576, 594, 613, 733
ApeKI	GCWGC	1 cut(s)	926
Asp700I	GAANNNNTTC	1 cut(s)	347
AspS9I	GGNCC	4 cut(s)	201, 607, 808, 908
AsuC2I	CCSGG	2 cut(s)	236, 783
AsuHPI	GGTGA	3 cut(s)	169, 268, 1037
AvaI	CYCGRG	1 cut(s)	455
AvaII	GGWCC	4 cut(s)	201, 607, 808, 908
AxyI	CCTNAGG	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	68
Bbv12I	GWGCWC	2 cut(s)	147, 781
BbvI	GCAGC	1 cut(s)	913
BccI	CCATC	3 cut(s)	167, 218, 677
BceAI	ACGGC	2 cut(s)	283, 939
BclI	TGATCA	1 cut(s)	258
BcnI	CCSGG	2 cut(s)	236, 783
BfaI	CTAG	1 cut(s)	221
BfuAI	ACCTGC	2 cut(s)	919, 1056
BglII	AGATCT	1 cut(s)	819
BisI	GCNGC	3 cut(s)	630, 927, 1020
BlsI	GCNGC	3 cut(s)	631, 928, 1021
Bme1390I	CCNGG	2 cut(s)	236, 783
Bme18I	GGWCC	4 cut(s)	201, 607, 808, 908
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	4 cut(s)	201, 607, 808, 908
BmiI	GGNNCC	5 cut(s)	6, 67, 372, 608, 809
BmrFI	CCNGG	2 cut(s)	236, 783
BmrI	ACTGGG	1 cut(s)	613
BmsI	GCATC	4 cut(s)	57, 118, 862, 1020
BmuI	ACTGGG	1 cut(s)	613
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	2 cut(s)	236, 783
Bsa29I	ATCGAT	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	99
BsaJI	CCNNGG	5 cut(s)	27, 265, 591, 610, 1017
BsaWI	WCCGGW	1 cut(s)	198
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 566, 596
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 241, 603
Bse1I	ACTGG	1 cut(s)	608
Bse21I	CCTNAGG	1 cut(s)	330
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	5 cut(s)	27, 265, 591, 610, 1017
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	3 cut(s)	198, 241, 603
BseMII	CTCAG	3 cut(s)	267, 321, 1053
BseNI	ACTGG	1 cut(s)	608
BseRI	GAGGAG	2 cut(s)	347, 350
BseXI	GCAGC	1 cut(s)	913
BsgI	GTGCAG	1 cut(s)	897
Bsh1236I	CGCG	1 cut(s)	1019
Bsh1285I	CGRYCG	1 cut(s)	408
BshFI	GGCC	4 cut(s)	578, 596, 615, 735
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	162
BsiEI	CGRYCG	1 cut(s)	408
BsiHKAI	GWGCWC	2 cut(s)	147, 781
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	4 cut(s)	199, 235, 644, 782
BsiWI	CGTACG	1 cut(s)	99
BslFI	GGGAC	2 cut(s)	620, 821
BslI	CCNNNNNNNGG	3 cut(s)	198, 241, 603
BsmFI	GGGAC	2 cut(s)	620, 821
BsnI	GGCC	4 cut(s)	578, 596, 615, 735
BsoBI	CYCGRG	1 cut(s)	455
Bsp1286I	GDGCHC	3 cut(s)	68, 147, 781
BspACI	CCGC	5 cut(s)	384, 480, 630, 1017, 1019
BspANI	GGCC	4 cut(s)	578, 596, 615, 735
BspCNI	CTCAG	3 cut(s)	268, 322, 1054
BspDI	ATCGAT	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	1019
BspLI	GGNNCC	5 cut(s)	6, 67, 372, 608, 809
BspMI	ACCTGC	2 cut(s)	919, 1056
BspPI	GGATC	1 cut(s)	893
BspQI	GCTCTTC	1 cut(s)	210
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	608
BssECI	CCNNGG	5 cut(s)	27, 265, 591, 610, 1017
BssT1I	CCWWGG	1 cut(s)	591
Bst4CI	ACNGT	3 cut(s)	87, 491, 611
Bst6I	CTCTTC	2 cut(s)	210, 984
BstAPI	GCANNNNNTGC	1 cut(s)	231
BstBAI	YACGTR	1 cut(s)	99
BstC8I	GCNNGC	4 cut(s)	46, 133, 232, 1012
BstDEI	CTNAG	3 cut(s)	276, 330, 1062
BstDSI	CCRYGG	3 cut(s)	265, 610, 1017
BstF5I	GGATG	1 cut(s)	451
BstFNI	CGCG	1 cut(s)	1019
BstMCI	CGRYCG	1 cut(s)	408
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 231, 390, 785, 1016
BstSCI	CCNGG	2 cut(s)	234, 781
BstUI	CGCG	1 cut(s)	1019
BstV1I	GCAGC	1 cut(s)	913
BstX2I	RGATCY	2 cut(s)	819, 885
BstYI	RGATCY	2 cut(s)	819, 885
Bsu15I	ATCGAT	1 cut(s)	162
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	4 cut(s)	578, 596, 615, 735
BsuTUI	ATCGAT	1 cut(s)	162
BtgI	CCRYGG	3 cut(s)	265, 610, 1017
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	1 cut(s)	496
BveI	ACCTGC	2 cut(s)	919, 1056
Cac8I	GCNNGC	4 cut(s)	46, 133, 232, 1012
Cfr13I	GGNCC	4 cut(s)	201, 607, 808, 908
Cfr42I	CCGCGG	1 cut(s)	1020
ClaI	ATCGAT	1 cut(s)	162
Csp6I	GTAC	8 cut(s)	83, 94, 100, 272, 583, 838, 899, 1024
CviAII	CATG	6 cut(s)	295, 598, 727, 905, 997, 1027
CviQI	GTAC	8 cut(s)	83, 94, 100, 272, 583, 838, 899, 1024
DdeI	CTNAG	3 cut(s)	276, 330, 1062
Eam1104I	CTCTTC	2 cut(s)	210, 984
EarI	CTCTTC	2 cut(s)	210, 984
Eco130I	CCWWGG	1 cut(s)	591
Eco24I	GRGCYC	1 cut(s)	68
Eco47I	GGWCC	4 cut(s)	201, 607, 808, 908
Eco57I	CTGAAG	1 cut(s)	989
Eco81I	CCTNAGG	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	455
EcoT14I	CCWWGG	1 cut(s)	591
EcoT38I	GRGCYC	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	6 cut(s)	298, 601, 730, 908, 1000, 1030
FaqI	GGGAC	2 cut(s)	620, 821
FatI	CATG	6 cut(s)	294, 597, 726, 904, 996, 1026
FauI	CCCGC	2 cut(s)	487, 1024
FauNDI	CATATG	1 cut(s)	985
FbaI	TGATCA	1 cut(s)	258
Fnu4HI	GCNGC	3 cut(s)	630, 927, 1020
FokI	GGATG	1 cut(s)	438
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	3 cut(s)	630, 927, 1020
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	3 cut(s)	630, 927, 1020
HaeIII	GGCC	4 cut(s)	578, 596, 615, 735
HapII	CCGG	4 cut(s)	199, 235, 644, 782
Hin1II	CATG	6 cut(s)	298, 601, 730, 908, 1000, 1030
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	2 cut(s)	675, 706
HpaI	GTTAAC	1 cut(s)	799
HpaII	CCGG	4 cut(s)	199, 235, 644, 782
HphI	GGTGA	3 cut(s)	169, 268, 1037
Hpy166II	GTNNAC	4 cut(s)	96, 653, 799, 868
Hpy188I	TCNGA	6 cut(s)	70, 91, 559, 674, 720, 977
Hpy188III	TCNNGA	6 cut(s)	52, 106, 329, 455, 823, 941
Hpy8I	GTNNAC	4 cut(s)	96, 653, 799, 868
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	3 cut(s)	87, 491, 611
HpyCH4IV	ACGT	4 cut(s)	21, 98, 102, 399
HpyCH4V	TGCA	3 cut(s)	533, 817, 914
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 231, 390, 785, 1016
HpyF3I	CTNAG	3 cut(s)	276, 330, 1062
HpySE526I	ACGT	4 cut(s)	21, 98, 102, 399
Hsp92II	CATG	6 cut(s)	298, 601, 730, 908, 1000, 1030
Ksp22I	TGATCA	1 cut(s)	258
KspAI	GTTAAC	1 cut(s)	799
KspI	CCGCGG	1 cut(s)	1020
LguI	GCTCTTC	1 cut(s)	210
LmnI	GCTCC	4 cut(s)	71, 191, 784, 967
Lsp1109I	GCAGC	1 cut(s)	913
LweI	GCATC	4 cut(s)	57, 118, 862, 1020
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	4 cut(s)	21, 98, 102, 399
MaeIII	GTNAC	1 cut(s)	703
MboII	GAAGA	4 cut(s)	227, 317, 352, 1001
MflI	RGATCY	2 cut(s)	819, 885
MhlI	GDGCHC	3 cut(s)	68, 147, 781
MluCI	AATT	4 cut(s)	76, 539, 772, 936
MlyI	GAGTC	1 cut(s)	700
MmeI	TCCRAC	3 cut(s)	69, 483, 552
MroXI	GAANNNNTTC	1 cut(s)	347
MseI	TTAA	4 cut(s)	396, 771, 798, 1056
MslI	CAYNNNNRTG	1 cut(s)	977
MspA1I	CMGCKG	1 cut(s)	1019
MspI	CCGG	4 cut(s)	199, 235, 644, 782
MspR9I	CCNGG	2 cut(s)	236, 783
MvnI	CGCG	1 cut(s)	1019
MwoI	GCNNNNNNNGC	5 cut(s)	23, 231, 390, 785, 1016
NciI	CCSGG	2 cut(s)	236, 783
NdeI	CATATG	1 cut(s)	985
NlaIII	CATG	6 cut(s)	298, 601, 730, 908, 1000, 1030
NlaIV	GGNNCC	5 cut(s)	6, 67, 372, 608, 809
NmeAIII	GCCGAG	2 cut(s)	52, 604
NmuCI	GTSAC	1 cut(s)	703
PaqCI	CACCTGC	1 cut(s)	1056
PciSI	GCTCTTC	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	2 cut(s)	95, 405
PdmI	GAANNNNTTC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	675
Pfl23II	CGTACG	1 cut(s)	99
PflMI	CCANNNNNTGG	1 cut(s)	603
PkrI	GCNGC	3 cut(s)	631, 928, 1021
Ple19I	CGATCG	1 cut(s)	408
PleI	GAGTC	1 cut(s)	700
PpsI	GAGTC	1 cut(s)	700
Ppu21I	YACGTR	1 cut(s)	99
Psp1406I	AACGTT	2 cut(s)	21, 399
PspLI	CGTACG	1 cut(s)	99
PspN4I	GGNNCC	5 cut(s)	6, 67, 372, 608, 809
PspPI	GGNCC	4 cut(s)	201, 607, 808, 908
PsuI	RGATCY	2 cut(s)	819, 885
PvuI	CGATCG	1 cut(s)	408
RsaI	GTAC	8 cut(s)	84, 95, 101, 273, 584, 839, 900, 1025
RsaNI	GTAC	8 cut(s)	83, 94, 100, 272, 583, 838, 899, 1024
RseI	CAYNNNNRTG	1 cut(s)	977
SacII	CCGCGG	1 cut(s)	1020
SapI	GCTCTTC	1 cut(s)	210
SaqAI	TTAA	4 cut(s)	396, 771, 798, 1056
SatI	GCNGC	3 cut(s)	630, 927, 1020
Sau96I	GGNCC	4 cut(s)	201, 607, 808, 908
SchI	GAGTC	1 cut(s)	700
ScrFI	CCNGG	2 cut(s)	236, 783
SduI	GDGCHC	3 cut(s)	68, 147, 781
SfaNI	GCATC	4 cut(s)	57, 118, 862, 1020
Sfr303I	CCGCGG	1 cut(s)	1020
SgrBI	CCGCGG	1 cut(s)	1020
SinI	GGWCC	4 cut(s)	201, 607, 808, 908
SmiMI	CAYNNNNRTG	1 cut(s)	977
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	4 cut(s)	76, 539, 772, 936
SsiI	CCGC	5 cut(s)	384, 480, 630, 1017, 1019
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	234, 781
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	3 cut(s)	87, 491, 611
TaiI	ACGT	4 cut(s)	24, 101, 105, 402
TaqI	TCGA	5 cut(s)	162, 213, 300, 408, 523
TasI	AATT	4 cut(s)	76, 539, 772, 936
TatI	WGTACW	3 cut(s)	93, 582, 837
TauI	GCSGC	2 cut(s)	632, 1022
TfiI	GAWTC	1 cut(s)	675
Tru1I	TTAA	4 cut(s)	396, 771, 798, 1056
Tru9I	TTAA	4 cut(s)	396, 771, 798, 1056
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	1 cut(s)	703
TseI	GCWGC	1 cut(s)	926
Tsp45I	GTSAC	1 cut(s)	703
TspDTI	ATGAA	4 cut(s)	302, 614, 985, 1002
TspGWI	ACGGA	3 cut(s)	70, 711, 768
TspRI	CASTG	1 cut(s)	496
Van91I	CCANNNNNTGG	1 cut(s)	603
VpaK11BI	GGWCC	4 cut(s)	201, 607, 808, 908
XmnI	GAANNNNTTC	1 cut(s)	347
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.