pycom05g03830

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
4371072 .. 4373260
2189 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g03830.1

Sequence Viewer

Length: 1080 bp
ATGGCACCTACAGTGACTTCAGTGGACGCATCTGAACCCAAGGTAGCAAGCATCAAAACCGTGGCCGACTCAGATGCTCTCACTTATGTACCTTCCGAGTACACCTACACCATGGATCCCAACGACAAGGGAGATGAAAACGACCCAGAACACTCAATCCCCATCATTGATTTTGCTCTTCTCACCTCTGCCTCCCCTGATGAACGGGCACAAATGATCCAAAAAATAGGCAAAGCTTGCGAAGAATGGGGCTTCTTTCAGGTGATTAATCACGGTGTACCCGAAAGCCTGATGAAAGAAATGATCGACGCGTGTCGAAGATTTTTTGAGCTGCCGGAGGAGGAGAAGAAGGAGTTCCAAACAAGGAACCTGCTGGACCCTATTAAGTGCGGCACCAGTTTCAACGTCGCAATTGACAAAGTTCGTCTCTGGAGGGATTATCTCAAGGTCATAGCACACCCTGAGTTCAACTCACTCTACAAACCTGCTGGATACAGCGAGGTGTCATTGGAGTTCAGTAAAAGAACCCATGCAGTGGCAACCGAAATTTTGAATGGAATATCGGAGAGCTTGGGATTGGAGGCCGATTACATTGCGAAGGCCATGAACTGGGATCGCGGCTTGCAAATTCTGGCCGCGAACTACTACCCGGCTTGCCCACAGCCCGACCTGGCTATCGGTATTCCTCCTCATACCGATCACGGACTGGTGACACTCTTGATTCAGAATGATATGTGTGGCCTCGAAGTCAAGCACAATGATCAATGGGTCTTGGTGAAAGCTGCTCCCGGCGCTTTTGTTGTTAACGTTGGCGATCAAATGCAGATTCTGACAAACGACAAGTACAAGAGCGTATGGCATCGAGCAACTGTGAACAACACAGCTACGAGGATATCGATCGCAGTACCACATGGACCGGCACTGGACACACCTGCTCTACCGATCTCGGAGTTGCTAGAAAAGGAAGGCGAAAAAGCAAAGTACATTGGAATGACATATGAGAAATTCATGGAACTTCAGGCAAGCCCCGCTGCCTACATGATGCCTTGCTTGGATCACCTGCGCGTCAAGGACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

360

Amino Acids

40.06

Weight (kDa)

5.02

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 53 - 159 1.1e-28 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 209 - 304 6.7e-31 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 940, 1068
Acc36I ACCTGC 4 cut(s) 378, 493, 940, 1068
AccB1I GGYRCC 2 cut(s) 4, 392
AccB7I CCANNNNNTGG 2 cut(s) 535, 609
AccII CGCG 4 cut(s) 311, 618, 638, 1065
AciI CCGC 4 cut(s) 390, 618, 636, 1029
AclI AACGTT 1 cut(s) 807
AclWI GGATC 5 cut(s) 110, 123, 211, 621, 1062
AcoI YGGCCR 2 cut(s) 63, 633
AcsI RAATTY 3 cut(s) 546, 627, 1004
AcuI CTGAAG 1 cut(s) 1001
AfaI GTAC 6 cut(s) 90, 101, 279, 845, 906, 983
AfiI CCNNNNNNNGG 2 cut(s) 535, 609
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 3 cut(s) 403, 469, 553
AjnI CCWGG 1 cut(s) 669
AloI GAACNNNNNNTCC 2 cut(s) 141, 173
AluBI AGCT 5 cut(s) 236, 331, 570, 782, 884
AluI AGCT 5 cut(s) 236, 331, 570, 782, 884
Alw26I GTCTC 1 cut(s) 431
AlwI GGATC 5 cut(s) 110, 123, 211, 621, 1062
AlwNI CAGNNNCTG 1 cut(s) 829
AoxI GGCC 5 cut(s) 63, 582, 600, 633, 739
ApeKI GCWGC 3 cut(s) 331, 782, 1031
ApoI RAATTY 3 cut(s) 546, 627, 1004
AseI ATTAAT 1 cut(s) 267
Asp700I GAANNNNTTC 1 cut(s) 353
AspLEI GCGC 2 cut(s) 794, 1065
AspS9I GGNCC 2 cut(s) 376, 914
AsuC2I CCSGG 2 cut(s) 650, 789
AsuHPI GGTGA 5 cut(s) 175, 274, 721, 787, 1049
AvaII GGWCC 2 cut(s) 376, 914
BaeGI GKGCMC 1 cut(s) 211
BaeI ACNNNNGTAYC 2 cut(s) 72, 105
BamHI GGATCC 1 cut(s) 115
BanI GGYRCC 2 cut(s) 4, 392
BbvI GCAGC 3 cut(s) 318, 769, 1018
BccI CCATC 1 cut(s) 170
BcgI CGANNNNNNTGC 4 cut(s) 56, 90, 575, 609
BciT130I CCWGG 1 cut(s) 671
BciVI GTATCC 1 cut(s) 485
BclI TGATCA 1 cut(s) 760
BcnI CCSGG 2 cut(s) 650, 789
BcoDI GTCTC 1 cut(s) 431
BfaI CTAG 1 cut(s) 956
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 795
BfuAI ACCTGC 4 cut(s) 378, 493, 940, 1068
BfuI GTATCC 1 cut(s) 485
BisI GCNGC 6 cut(s) 332, 391, 619, 636, 783, 1032
BlsI GCNGC 6 cut(s) 333, 392, 620, 637, 784, 1033
Bme1390I CCNGG 3 cut(s) 650, 671, 789
Bme18I GGWCC 2 cut(s) 376, 914
BmgT120I GGNCC 2 cut(s) 376, 914
BmiI GGNNCC 5 cut(s) 6, 117, 368, 378, 394
BmrFI CCNGG 3 cut(s) 650, 671, 789
BmrI ACTGGG 1 cut(s) 619
BmsI GCATC 5 cut(s) 38, 60, 64, 868, 1032
BmuI ACTGGG 1 cut(s) 619
BoxI GACNNNNGTC 1 cut(s) 312
BplI GAGNNNNNCTC 2 cut(s) 455, 487
BpmI CTGGAG 1 cut(s) 451
BpuEI CTTGAG 1 cut(s) 428
BpuMI CCSGG 2 cut(s) 650, 789
Bsa29I ATCGAT 1 cut(s) 896
BsaBI GATNNNNATC 1 cut(s) 896
BsaJI CCNNGG 3 cut(s) 39, 60, 111
Bsc4I CCNNNNNNNGG 2 cut(s) 535, 609
Bse118I RCCGGY 1 cut(s) 916
Bse1I ACTGG 4 cut(s) 396, 614, 711, 927
Bse3DI GCAATG 1 cut(s) 591
Bse8I GATNNNNATC 1 cut(s) 896
BseBI CCWGG 1 cut(s) 671
BseCI ATCGAT 1 cut(s) 896
BseDI CCNNGG 3 cut(s) 39, 60, 111
BseJI GATNNNNATC 1 cut(s) 896
BseLI CCNNNNNNNGG 2 cut(s) 535, 609
BseMI GCAATG 1 cut(s) 591
BseMII CTCAG 2 cut(s) 84, 453
BseNI ACTGG 4 cut(s) 396, 614, 711, 927
BseRI GAGGAG 3 cut(s) 353, 356, 678
BseSI GKGCMC 1 cut(s) 211
BseXI GCAGC 3 cut(s) 318, 769, 1018
Bsh1236I CGCG 4 cut(s) 311, 618, 638, 1065
Bsh1285I CGRYCG 1 cut(s) 900
BshFI GGCC 5 cut(s) 65, 584, 602, 635, 741
BshNI GGYRCC 2 cut(s) 4, 392
BshVI ATCGAT 1 cut(s) 896
BsiEI CGRYCG 1 cut(s) 900
BsiSI CCGG 4 cut(s) 335, 650, 789, 917
BslI CCNNNNNNNGG 2 cut(s) 535, 609
BsmAI GTCTC 1 cut(s) 431
BsmBI CGTCTC 1 cut(s) 431
BsnI GGCC 5 cut(s) 65, 584, 602, 635, 741
Bsp1286I GDGCHC 1 cut(s) 211
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 4 cut(s) 390, 618, 636, 1029
BspANI GGCC 5 cut(s) 65, 584, 602, 635, 741
BspCNI CTCAG 2 cut(s) 83, 454
BspDI ATCGAT 1 cut(s) 896
BspFNI CGCG 4 cut(s) 311, 618, 638, 1065
BspLI GGNNCC 5 cut(s) 6, 117, 368, 378, 394
BspMI ACCTGC 4 cut(s) 378, 493, 940, 1068
BspPI GGATC 5 cut(s) 110, 123, 211, 621, 1062
BspQI GCTCTTC 1 cut(s) 183
BspT107I GGYRCC 2 cut(s) 4, 392
BsrDI GCAATG 1 cut(s) 591
BsrFI RCCGGY 1 cut(s) 916
BsrI ACTGG 4 cut(s) 396, 614, 711, 927
BssAI RCCGGY 1 cut(s) 916
BssECI CCNNGG 3 cut(s) 39, 60, 111
BssT1I CCWWGG 2 cut(s) 39, 111
Bst2UI CCWGG 1 cut(s) 671
Bst4CI ACNGT 4 cut(s) 13, 61, 275, 871
Bst6I CTCTTC 1 cut(s) 183
BstAPI GCANNNNNTGC 1 cut(s) 237
BstC8I GCNNGC 5 cut(s) 49, 238, 623, 655, 1024
BstDEI CTNAG 2 cut(s) 70, 462
BstDSI CCRYGG 2 cut(s) 60, 111
BstFNI CGCG 4 cut(s) 311, 618, 638, 1065
BstH2I RGCGCY 1 cut(s) 795
BstHHI GCGC 2 cut(s) 794, 1065
BstMAI GTCTC 1 cut(s) 431
BstMCI CGRYCG 1 cut(s) 900
BstMWI GCNNNNNNNGC 3 cut(s) 237, 791, 1028
BstNI CCWGG 1 cut(s) 671
BstPAI GACNNNNGTC 1 cut(s) 312
BstSCI CCNGG 3 cut(s) 648, 669, 787
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 211
BstUI CGCG 4 cut(s) 311, 618, 638, 1065
BstV1I GCAGC 3 cut(s) 318, 769, 1018
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
Bsu15I ATCGAT 1 cut(s) 896
BsuI GTATCC 1 cut(s) 485
BsuRI GGCC 5 cut(s) 65, 584, 602, 635, 741
BsuTUI ATCGAT 1 cut(s) 896
BtgI CCRYGG 2 cut(s) 60, 111
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 4 cut(s) 18, 27, 540, 920
BveI ACCTGC 4 cut(s) 378, 493, 940, 1068
Cac8I GCNNGC 5 cut(s) 49, 238, 623, 655, 1024
CaiI CAGNNNCTG 1 cut(s) 829
CfoI GCGC 2 cut(s) 794, 1065
Cfr10I RCCGGY 1 cut(s) 916
Cfr13I GGNCC 2 cut(s) 376, 914
ClaI ATCGAT 1 cut(s) 896
CseI GACGC 3 cut(s) 35, 317, 1054
Csp6I GTAC 6 cut(s) 89, 100, 278, 844, 905, 982
CviAII CATG 6 cut(s) 112, 530, 604, 911, 1009, 1039
CviQI GTAC 6 cut(s) 89, 100, 278, 844, 905, 982
DdeI CTNAG 2 cut(s) 70, 462
EaeI YGGCCR 2 cut(s) 63, 633
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco130I CCWWGG 2 cut(s) 39, 111
Eco32I GATATC 1 cut(s) 894
Eco47I GGWCC 2 cut(s) 376, 914
Eco57I CTGAAG 1 cut(s) 1001
EcoRII CCWGG 1 cut(s) 669
EcoRV GATATC 1 cut(s) 894
EcoT14I CCWWGG 2 cut(s) 39, 111
ErhI CCWWGG 2 cut(s) 39, 111
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 6 cut(s) 115, 533, 607, 914, 1012, 1042
FatI CATG 6 cut(s) 111, 529, 603, 910, 1008, 1038
FauI CCCGC 1 cut(s) 1036
FauNDI CATATG 1 cut(s) 997
FbaI TGATCA 1 cut(s) 760
Fnu4HI GCNGC 6 cut(s) 332, 391, 619, 636, 783, 1032
Fsp4HI GCNGC 6 cut(s) 332, 391, 619, 636, 783, 1032
FspBI CTAG 1 cut(s) 956
GlaI GCGC 2 cut(s) 793, 1064
GluI GCNGC 6 cut(s) 332, 391, 619, 636, 783, 1032
GsuI CTGGAG 1 cut(s) 451
HaeII RGCGCY 1 cut(s) 795
HaeIII GGCC 5 cut(s) 65, 584, 602, 635, 741
HapII CCGG 4 cut(s) 335, 650, 789, 917
HgaI GACGC 3 cut(s) 35, 317, 1054
HhaI GCGC 2 cut(s) 794, 1065
Hin1II CATG 6 cut(s) 115, 533, 607, 914, 1012, 1042
Hin6I GCGC 2 cut(s) 792, 1063
HinP1I GCGC 2 cut(s) 792, 1063
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 3 cut(s) 68, 721, 826
HpaI GTTAAC 1 cut(s) 805
HpaII CCGG 4 cut(s) 335, 650, 789, 917
HphI GGTGA 5 cut(s) 175, 274, 721, 787, 1049
Hpy166II GTNNAC 5 cut(s) 25, 102, 278, 805, 874
Hpy188I TCNGA 7 cut(s) 34, 73, 97, 565, 726, 831, 949
Hpy188III TCNNGA 2 cut(s) 430, 718
Hpy8I GTNNAC 5 cut(s) 25, 102, 278, 805, 874
Hpy99I CGWCG 2 cut(s) 311, 410
HpyAV CCTTC 4 cut(s) 102, 343, 592, 959
HpyCH4III ACNGT 4 cut(s) 13, 61, 275, 871
HpyCH4IV ACGT 2 cut(s) 405, 807
HpyCH4V TGCA 3 cut(s) 533, 625, 823
HpyF10VI GCNNNNNNNGC 3 cut(s) 237, 791, 1028
HpyF3I CTNAG 2 cut(s) 70, 462
HpySE526I ACGT 2 cut(s) 405, 807
Hsp92II CATG 6 cut(s) 115, 533, 607, 914, 1012, 1042
HspAI GCGC 2 cut(s) 792, 1063
Ksp22I TGATCA 1 cut(s) 760
KspAI GTTAAC 1 cut(s) 805
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 1 cut(s) 790
Lsp1109I GCAGC 3 cut(s) 318, 769, 1018
LweI GCATC 5 cut(s) 38, 60, 64, 868, 1032
MaeI CTAG 1 cut(s) 956
MaeII ACGT 2 cut(s) 405, 807
MaeIII GTNAC 2 cut(s) 13, 709
MboII GAAGA 4 cut(s) 170, 254, 330, 358
MfeI CAATTG 2 cut(s) 411, 1075
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 5 cut(s) 411, 546, 627, 1004, 1075
MluI ACGCGT 1 cut(s) 309
MlyI GAGTC 1 cut(s) 62
MroXI GAANNNNTTC 1 cut(s) 353
MseI TTAA 3 cut(s) 267, 384, 804
MslI CAYNNNNRTG 1 cut(s) 989
MspA1I CMGCKG 1 cut(s) 1031
MspI CCGG 4 cut(s) 335, 650, 789, 917
MspR9I CCNGG 3 cut(s) 650, 671, 789
MunI CAATTG 2 cut(s) 411, 1075
MvaI CCWGG 1 cut(s) 671
MvnI CGCG 4 cut(s) 311, 618, 638, 1065
MwoI GCNNNNNNNGC 3 cut(s) 237, 791, 1028
NciI CCSGG 2 cut(s) 650, 789
NcoI CCATGG 1 cut(s) 111
NdeI CATATG 1 cut(s) 997
NlaIII CATG 6 cut(s) 115, 533, 607, 914, 1012, 1042
NlaIV GGNNCC 5 cut(s) 6, 117, 368, 378, 394
NmuCI GTSAC 2 cut(s) 13, 709
PaqCI CACCTGC 2 cut(s) 940, 1068
PciSI GCTCTTC 1 cut(s) 183
PcsI WCGNNNNNNNCGW 2 cut(s) 279, 893
PdmI GAANNNNTTC 1 cut(s) 353
PfeI GAWTC 2 cut(s) 721, 826
PflMI CCANNNNNTGG 2 cut(s) 535, 609
PkrI GCNGC 6 cut(s) 333, 392, 620, 637, 784, 1033
Ple19I CGATCG 1 cut(s) 900
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PshAI GACNNNNGTC 1 cut(s) 312
PshBI ATTAAT 1 cut(s) 267
Psp1406I AACGTT 1 cut(s) 807
Psp6I CCWGG 1 cut(s) 669
PspGI CCWGG 1 cut(s) 669
PspN4I GGNNCC 5 cut(s) 6, 117, 368, 378, 394
PspPI GGNCC 2 cut(s) 376, 914
PstNI CAGNNNCTG 1 cut(s) 829
PsuI RGATCY 1 cut(s) 115
PvuI CGATCG 1 cut(s) 900
RsaI GTAC 6 cut(s) 90, 101, 279, 845, 906, 983
RsaNI GTAC 6 cut(s) 89, 100, 278, 844, 905, 982
RseI CAYNNNNRTG 1 cut(s) 989
SapI GCTCTTC 1 cut(s) 183
SaqAI TTAA 3 cut(s) 267, 384, 804
SatI GCNGC 6 cut(s) 332, 391, 619, 636, 783, 1032
Sau96I GGNCC 2 cut(s) 376, 914
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 3 cut(s) 650, 671, 789
SduI GDGCHC 1 cut(s) 211
SfaNI GCATC 5 cut(s) 38, 60, 64, 868, 1032
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 2 cut(s) 376, 914
SmiMI CAYNNNNRTG 1 cut(s) 989
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 5 cut(s) 411, 546, 627, 1004, 1075
SsiI CCGC 4 cut(s) 390, 618, 636, 1029
SspMI CTAG 1 cut(s) 956
StyD4I CCNGG 3 cut(s) 648, 669, 787
StyI CCWWGG 2 cut(s) 39, 111
TaaI ACNGT 4 cut(s) 13, 61, 275, 871
TaiI ACGT 2 cut(s) 408, 810
TaqI TCGA 5 cut(s) 306, 316, 744, 862, 896
TasI AATT 5 cut(s) 411, 546, 627, 1004, 1075
TatI WGTACW 3 cut(s) 99, 843, 981
TauI GCSGC 3 cut(s) 393, 621, 638
TfiI GAWTC 2 cut(s) 721, 826
Tru1I TTAA 3 cut(s) 267, 384, 804
Tru9I TTAA 3 cut(s) 267, 384, 804
TscAI CASTG 4 cut(s) 18, 27, 540, 927
TseFI GTSAC 2 cut(s) 13, 709
TseI GCWGC 3 cut(s) 331, 782, 1031
Tsp45I GTSAC 2 cut(s) 13, 709
TspDTI ATGAA 5 cut(s) 150, 216, 308, 620, 997
TspGWI ACGGA 1 cut(s) 717
TspRI CASTG 4 cut(s) 18, 27, 540, 927
Van91I CCANNNNNTGG 2 cut(s) 535, 609
VpaK11BI GGWCC 2 cut(s) 376, 914
VspI ATTAAT 1 cut(s) 267
XapI RAATTY 3 cut(s) 546, 627, 1004
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 1 cut(s) 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.