Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002403

Physical Location & Seq

Genomic Coordinates Forward (+)

36322697 .. 36324242

Gene Structure 1546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0331500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGATAGAACATGGCTGTCAGCGGATAGGAGATCTCGTGAATATAAGTTAGAGGTGATTCAATTCTGTAAGTTTGCCTTGGATAATGCTAGAGACCCCAATCACATTAGCTGTCCTTGCACGAAGTGTGGAAATGTAGAATATTTTTCGAGTTCGGTAATTAGGGACCATTTATTTGTAAATGGAATTTATGAGAGTTATGGTAAATGGACTGATCATGGGGAGGCTGTCGTGGATTCAGGAACAGATGAAGATACCAATAGCATGGAAACAAATTCAGATCAATCTGATTCTGTGCAGTGTAATGAGGGGGCAGAATATGAAGTAGAGTTAGGTAGTGACGTGGAGTTGGAAGATGATGAGGATGAAGGGCTTTCAAATGAGTGTAACGAGTTTAGACAGTTTGTTGATGATGCCAATAAACCGTTATACCCGGGTTGTGATGGGCACACAAAGTTGAATGTCCTTGTAAGACTTTACAACTTGAAAGCCAAGCACGGTATGAGTGATAATGCTTACTCTGATTGGTTGATTGCCTTTGCAGAGTTTCTTCCAGTAGGCAATGAGATACCTGCCTCTGTGTATGACGCAAAGAAGACGTTGAGTGCTCTAGGAATGGATTACACTAAAATTCATGCTTGCCCAAATGATTGTATTATGTATAGAAAAGAGTATGTTGATGAAACTGAATGCCCTAGATGCGGTTTTTCAAGGTGGAAAATAGGTAAAAACTCCAAAGAGAGGGACGGTGTGCCTGCAAAGGTATTATGGTACTTTCCCCCTATTCCTAGGTTCAAAAAAATGTTTCAATCAACTGAAACATGTAAGAGTTTGACTTGGCATGCTATTGATAGAAAACATGATGGCTTGATGCGTCATCCGACAGATGCTGCTTCGTGGAAGTTAGTAGATGAAAAATGGCCGGAGTTTGGTTCTGACCCTAGAAACCTTAGACTTGCATTGTCATCAGATGAGTTCAATCCCCATAGTTCATTAAGTAGCAAGTACGCTTATGGTAACCTTTCTGGGAGTATTGTTAAGGGGTATAATGCATGCCTTATTTGCCTTGAAAAAACAGAACCTACAAGGCTAGTTAATAGAGGGAAAATGACCTACATTGGGCATCGAAGATTTTTACGAATAAATCAACCGTATCGAAAGCAAAAAGATGCCTTCAACAACTTCCCTGAGCATTTACCTCTTCCTGTGCCTTTGACTGGTGAAGAAGTATTGTGTAGGGTAGAGAATGAAATTTTGAAGTGGGCATTTTGGGAAGAAATATCTTCAACCTCCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

432

Amino Acids

49.51

Weight (kDa)

5.37

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transpos_assoc	PF13963	3 - 75	1.4e-19	Transposase-associated domain
Transposase_21	PF02992	288 - 337	6e-15	Transposase family tnp2
Transposase_21	PF02992	337 - 415	1.6e-18	Transposase family tnp2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38040 FvH4_5g38040 FvH4_5g38050
malus_domestica	MD05G1046000.v1.1 MD10G1052800.v1.1 MD10G1053000.v1.1 MD10G1053100.v1.1 MD10G1053200.v1.1
prunus_persica	Prupe.8G066500_v2.0.a1 Prupe.8G066600_v2.0.a1 Prupe.8G066600_v2.0.a1
pyrus_communis	pycom05g03830 pycom10g03780 pycom10g03830 pycom10g03910 pycom10g04020
rosa_chinensis	RchiOBHm_Chr6g0265671 RchiOBHm_Chr7g0239961 RchiOBHm_Chr7g0239991
rosa_laevigata	RLG00000000713 RLG00000000714 RLG00000014168
rosa_multiflora	Rmu_co8141760.1_g000001 Rmu_sc0000540.1_g000014 Rmu_sc0000540.1_g000017 Rmu_sc0006825.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220550 Rroxscaffold_3G00220590
rosa_rugosa	Rorug06G0018400 Rorug07G0331500
rosa_samantha	Rh6BG140400 Rh6CG137300 Rh6DG123800 Rh7AG485400 Rh7AG485500 Rh7BG458200 Rh7BG458300 Rh7CG502500 Rh7CG502700 Rh7DG470900 Rh7DG471000
rosa_wichuraiana	Rw7G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	580
AciI	CCGC	2 cut(s)	23, 702
AcoI	YGGCCR	1 cut(s)	920
AcsI	RAATTY	4 cut(s)	186, 274, 630, 1251
AdeI	CACNNNGTG	1 cut(s)	126
AfaI	GTAC	2 cut(s)	773, 1007
AfiI	CCNNNNNNNGG	5 cut(s)	701, 741, 929, 1119, 1217
AflIII	ACRYGT	1 cut(s)	821
AjiI	CACGTC	1 cut(s)	343
AluBI	AGCT	1 cut(s)	111
AluI	AGCT	1 cut(s)	111
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	1 cut(s)	87
AlwNI	CAGNNNCTG	1 cut(s)	890
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	1 cut(s)	920
ApeKI	GCWGC	1 cut(s)	890
ApoI	RAATTY	4 cut(s)	186, 274, 630, 1251
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AspA2I	CCTAGG	1 cut(s)	788
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	2 cut(s)	434, 435
AsuHPI	GGTGA	2 cut(s)	67, 1232
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	166
AvrII	CCTAGG	1 cut(s)	788
BaeGI	GKGCMC	1 cut(s)	450
BauI	CACGAG	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	602
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	1 cut(s)	877
BccI	CCATC	2 cut(s)	437, 857
BclI	TGATCA	1 cut(s)	214
BcnI	CCSGG	2 cut(s)	434, 435
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	6 cut(s)	90, 611, 696, 789, 942, 1091
BfuAI	ACCTGC	1 cut(s)	580
BglII	AGATCT	1 cut(s)	32
BisI	GCNGC	1 cut(s)	891
BlnI	CCTAGG	1 cut(s)	788
BlsI	GCNGC	1 cut(s)	892
Bme1390I	CCNGG	2 cut(s)	434, 435
Bme18I	GGWCC	1 cut(s)	166
BmeT110I	CYCGRG	1 cut(s)	433
BmgBI	CACGTC	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	2 cut(s)	434, 435
BmsI	GCATC	6 cut(s)	403, 689, 861, 877, 1132, 1159
BpiI	GAAGAC	1 cut(s)	602
Bpu10I	CCTNAGC	1 cut(s)	1188
BpuMI	CCSGG	2 cut(s)	434, 435
BsaI	GGTCTC	1 cut(s)	87
BsaJI	CCNNGG	3 cut(s)	78, 433, 788
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	5 cut(s)	701, 741, 929, 1119, 1217
Bse1I	ACTGG	2 cut(s)	554, 1222
Bse3DI	GCAATG	1 cut(s)	568
BseDI	CCNNGG	3 cut(s)	78, 433, 788
BseGI	GGATG	2 cut(s)	370, 877
BseLI	CCNNNNNNNGG	5 cut(s)	701, 741, 929, 1119, 1217
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	1 cut(s)	1179
BseNI	ACTGG	2 cut(s)	554, 1222
BseSI	GKGCMC	1 cut(s)	450
BseXI	GCAGC	1 cut(s)	877
BsgI	GTGCAG	1 cut(s)	317
BshFI	GGCC	1 cut(s)	922
BsiHKAI	GWGCWC	1 cut(s)	610
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	2 cut(s)	434, 923
BslFI	GGGAC	2 cut(s)	179, 758
BslI	CCNNNNNNNGG	5 cut(s)	701, 741, 929, 1119, 1217
BsmAI	GTCTC	1 cut(s)	87
BsmFI	GGGAC	2 cut(s)	179, 758
BsmI	GAATGC	1 cut(s)	695
BsnI	GGCC	1 cut(s)	922
Bso31I	GGTCTC	1 cut(s)	87
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	2 cut(s)	450, 610
Bsp143I	GATC	3 cut(s)	32, 214, 280
BspACI	CCGC	2 cut(s)	23, 702
BspANI	GGCC	1 cut(s)	922
BspCNI	CTCAG	1 cut(s)	1180
BspLI	GGNNCC	1 cut(s)	167
BspMI	ACCTGC	1 cut(s)	580
BspTNI	GGTCTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	568
BsrI	ACTGG	2 cut(s)	554, 1222
BssECI	CCNNGG	3 cut(s)	78, 433, 788
BssMI	GATC	3 cut(s)	32, 214, 280
BssSI	CACGAG	1 cut(s)	36
BssT1I	CCWWGG	2 cut(s)	78, 788
Bst2BI	CACGAG	1 cut(s)	36
Bst4CI	ACNGT	5 cut(s)	402, 426, 500, 749, 1152
Bst6I	CTCTTC	1 cut(s)	1206
BstC8I	GCNNGC	4 cut(s)	640, 756, 843, 1054
BstDEI	CTNAG	2 cut(s)	950, 1188
BstEII	GGTNACC	1 cut(s)	1016
BstF5I	GGATG	2 cut(s)	370, 877
BstKTI	GATC	3 cut(s)	35, 217, 283
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	3 cut(s)	32, 214, 280
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 699, 1062
BstNSI	RCATGY	3 cut(s)	825, 845, 1056
BstPI	GGTNACC	1 cut(s)	1016
BstSCI	CCNGG	2 cut(s)	432, 433
BstSLI	GKGCMC	1 cut(s)	450
BstV1I	GCAGC	1 cut(s)	877
BstV2I	GAAGAC	1 cut(s)	602
BstX2I	RGATCY	1 cut(s)	32
BstXI	CCANNNNNNTGG	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	922
BtrI	CACGTC	1 cut(s)	343
BtsCI	GGATG	2 cut(s)	370, 877
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	305
BveI	ACCTGC	1 cut(s)	580
Cac8I	GCNNGC	4 cut(s)	640, 756, 843, 1054
CaiI	CAGNNNCTG	1 cut(s)	890
Cfr13I	GGNCC	1 cut(s)	166
Cfr9I	CCCGGG	1 cut(s)	433
CseI	GACGC	2 cut(s)	596, 863
Csp6I	GTAC	2 cut(s)	772, 1006
CviAII	CATG	8 cut(s)	12, 218, 265, 635, 822, 842, 860, 1053
CviJI	RGCY	8 cut(s)	16, 111, 227, 373, 491, 867, 922, 1090
CviKI_1	RGCY	8 cut(s)	16, 111, 227, 373, 491, 867, 922, 1090
CviQI	GTAC	2 cut(s)	772, 1006
DdeI	CTNAG	2 cut(s)	950, 1188
DpnI	GATC	3 cut(s)	34, 216, 282
DpnII	GATC	3 cut(s)	32, 214, 280
DraIII	CACNNNGTG	1 cut(s)	126
EaeI	YGGCCR	1 cut(s)	920
Eam1104I	CTCTTC	1 cut(s)	1206
EarI	CTCTTC	1 cut(s)	1206
Eco130I	CCWWGG	2 cut(s)	78, 788
Eco31I	GGTCTC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	166
Eco88I	CYCGRG	1 cut(s)	433
Eco91I	GGTNACC	1 cut(s)	1016
EcoO65I	GGTNACC	1 cut(s)	1016
EcoT14I	CCWWGG	2 cut(s)	78, 788
EcoT22I	ATGCAT	1 cut(s)	1054
ErhI	CCWWGG	2 cut(s)	78, 788
FaeI	CATG	8 cut(s)	15, 221, 268, 638, 825, 845, 863, 1056
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	2 cut(s)	179, 758
FatI	CATG	8 cut(s)	11, 217, 264, 634, 821, 841, 859, 1052
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	891
FokI	GGATG	2 cut(s)	377, 864
Fsp4HI	GCNGC	1 cut(s)	891
FspBI	CTAG	6 cut(s)	90, 611, 696, 789, 942, 1091
GluI	GCNGC	1 cut(s)	891
HaeIII	GGCC	1 cut(s)	922
HapII	CCGG	2 cut(s)	434, 923
HgaI	GACGC	2 cut(s)	596, 863
Hin1II	CATG	8 cut(s)	15, 221, 268, 638, 825, 845, 863, 1056
HinfI	GANTC	3 cut(s)	58, 236, 290
HpaII	CCGG	2 cut(s)	434, 923
HphI	GGTGA	2 cut(s)	67, 1232
Hpy188I	TCNGA	6 cut(s)	280, 289, 523, 882, 937, 970
Hpy188III	TCNNGA	2 cut(s)	38, 240
HpyAV	CCTTC	2 cut(s)	362, 1183
HpyCH4III	ACNGT	5 cut(s)	402, 426, 500, 749, 1152
HpyCH4IV	ACGT	2 cut(s)	342, 599
HpyCH4V	TGCA	6 cut(s)	120, 298, 542, 758, 959, 1052
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 699, 1062
HpyF3I	CTNAG	2 cut(s)	950, 1188
HpySE526I	ACGT	2 cut(s)	342, 599
Hsp92II	CATG	8 cut(s)	15, 221, 268, 638, 825, 845, 863, 1056
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	3 cut(s)	32, 214, 280
Lsp1109I	GCAGC	1 cut(s)	877
LweI	GCATC	6 cut(s)	403, 689, 861, 877, 1132, 1159
MaeI	CTAG	6 cut(s)	90, 611, 696, 789, 942, 1091
MaeII	ACGT	2 cut(s)	342, 599
MaeIII	GTNAC	3 cut(s)	338, 386, 1016
MalI	GATC	3 cut(s)	34, 216, 282
MboI	GATC	3 cut(s)	32, 214, 280
MboII	GAAGA	9 cut(s)	263, 365, 542, 607, 1140, 1193, 1235, 1275, 1286
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	2 cut(s)	450, 610
MluCI	AATT	6 cut(s)	62, 159, 186, 274, 630, 1251
MmeI	TCCRAC	2 cut(s)	330, 905
MnlI	CCTC	8 cut(s)	46, 217, 301, 355, 586, 735, 1094, 1209
Mph1103I	ATGCAT	1 cut(s)	1054
MseI	TTAA	3 cut(s)	995, 1038, 1095
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	2 cut(s)	434, 923
MspR9I	CCNGG	2 cut(s)	434, 435
Mva1269I	GAATGC	1 cut(s)	695
MwoI	GCNNNNNNNGC	3 cut(s)	117, 699, 1062
NciI	CCSGG	2 cut(s)	434, 435
NdeII	GATC	3 cut(s)	32, 214, 280
NlaIII	CATG	8 cut(s)	15, 221, 268, 638, 825, 845, 863, 1056
NlaIV	GGNNCC	1 cut(s)	167
NmuCI	GTSAC	1 cut(s)	338
NsiI	ATGCAT	1 cut(s)	1054
NspI	RCATGY	3 cut(s)	825, 845, 1056
PaeI	GCATGC	2 cut(s)	845, 1056
PciI	ACATGT	1 cut(s)	821
PctI	GAATGC	1 cut(s)	695
PfeI	GAWTC	3 cut(s)	58, 236, 290
PkrI	GCNGC	1 cut(s)	892
PscI	ACATGT	1 cut(s)	821
PspEI	GGTNACC	1 cut(s)	1016
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	890
PsuI	RGATCY	1 cut(s)	32
RsaI	GTAC	2 cut(s)	773, 1007
RsaNI	GTAC	2 cut(s)	772, 1006
SaqAI	TTAA	3 cut(s)	995, 1038, 1095
SatI	GCNGC	1 cut(s)	891
Sau3AI	GATC	3 cut(s)	32, 214, 280
Sau96I	GGNCC	1 cut(s)	166
ScrFI	CCNGG	2 cut(s)	434, 435
SduI	GDGCHC	2 cut(s)	450, 610
SfaNI	GCATC	6 cut(s)	403, 689, 861, 877, 1132, 1159
SinI	GGWCC	1 cut(s)	166
SmaI	CCCGGG	1 cut(s)	435
SphI	GCATGC	2 cut(s)	845, 1056
Sse9I	AATT	6 cut(s)	62, 159, 186, 274, 630, 1251
SsiI	CCGC	2 cut(s)	23, 702
SspI	AATATT	1 cut(s)	143
SspMI	CTAG	6 cut(s)	90, 611, 696, 789, 942, 1091
StyD4I	CCNGG	2 cut(s)	432, 433
StyI	CCWWGG	2 cut(s)	78, 788
TaaI	ACNGT	5 cut(s)	402, 426, 500, 749, 1152
TaiI	ACGT	2 cut(s)	345, 602
TaqI	TCGA	3 cut(s)	149, 1126, 1156
TasI	AATT	6 cut(s)	62, 159, 186, 274, 630, 1251
TfiI	GAWTC	3 cut(s)	58, 236, 290
Tru1I	TTAA	3 cut(s)	995, 1038, 1095
Tru9I	TTAA	3 cut(s)	995, 1038, 1095
TscAI	CASTG	1 cut(s)	305
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	1 cut(s)	890
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	8 cut(s)	264, 336, 381, 623, 696, 927, 981, 1263
TspGWI	ACGGA	1 cut(s)	1282
TspMI	CCCGGG	1 cut(s)	433
TspRI	CASTG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	4 cut(s)	186, 274, 630, 1251
XceI	RCATGY	3 cut(s)	825, 845, 1056
XmaI	CCCGGG	1 cut(s)	433
XmaJI	CCTAGG	1 cut(s)	788
XspI	CTAG	6 cut(s)	90, 611, 696, 789, 942, 1091
Zsp2I	ATGCAT	1 cut(s)	1054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.