Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002403

Physical Location & Seq

Genomic Coordinates Forward (+)

9834136 .. 9835889

Gene Structure 1754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G066500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCACCTACAGTTACTTCAATGGAGGCATCTAATGGCCATGAAGTACCCAAAGTAGCAAGCATCAAAACACTAGCTGACTCAGCTTCCCTCACTTTTATACCTTCTGAGTACACCTATACCAAAAATCCTAATGAACAAGGCGATGCAAACGACCCAGAGCATTCAATCCCCATCATTGATTTCGCCCTACTCACGTTGGGATCTCCTGATCAACGAGCAAAAGTGATCCAGGAGCTGCGCAGAGCTTGCGAGGAATGGGGCTTCTTCCAGGTGACCAACCACGGTGTACCAGAGAGCCTGATGCAATCAATGATCGGAGCGTGTCATAGATTCTTTGATCTGCCGGAGGAGGAGAAGAAGGAGTTCCAAACAAGGAACCTGTTGGATCCAATCAAGTGCGGCACCAGCTTCAACGTCGACATTGAAAAAGTTCATCTCTGGAGGGATTTCCTCAAGGTCATAGCCCACCCTGAGTTCAACTCACTCTACAAACCTGCTGGATACAGCGAGGTTTCGCTGGAGTTCAGCAAACGAACCCGAGAAGTAGCCACAGAAATATTGAAGGGAATATCAGAGAGCTTAGGGTTGGAGGCTGACTACATAGCAAAGGCCACGAACTGGGACCGTGGCTTACAAATTCTGGCCGCGAATTACTACCCGGCGTGCCCACAGCCCGATAAAGCAATCGGTCTACCTCCTCATACCGATCATGGACTGGTGACCCTCCTCATTCAGAATGAGATGGGTGGCCTTGAAGTCAAGCACAAAGACCAATGGGTATTGGTGAATGCTGCTCCGGGAGCTTTTATTGTTAACATTGGTGACCAAATGCAGATTTTGACAAACGACAAGTACAAGAGCATATGGCATAGGGCTGTTGTGAACAACAAAGCTACGAGGATATCAATAGCTGTGCCCCATGGACCCTCACTGGACACACCAGCTTTACCAATCCCAGAGTTGTTAGAGAGAGGAGGCCAAGCCCCAAAATACATTGGAATGACATATGAGAAATTCATGGAGCTTCAAGCAAGCCCTGCTGCCCTCACGAAACCTTGCTTAGATCACCTGCGGGTCAAGCATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

364

Amino Acids

40.43

Weight (kDa)

5.82

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38040 FvH4_5g38040 FvH4_5g38050
malus_domestica	MD05G1046000.v1.1 MD10G1052800.v1.1 MD10G1053000.v1.1 MD10G1053100.v1.1 MD10G1053200.v1.1
prunus_persica	Prupe.8G066500_v2.0.a1 Prupe.8G066600_v2.0.a1 Prupe.8G066600_v2.0.a1
pyrus_communis	pycom05g03830 pycom10g03780 pycom10g03830 pycom10g03910 pycom10g04020
rosa_chinensis	RchiOBHm_Chr6g0265671 RchiOBHm_Chr7g0239961 RchiOBHm_Chr7g0239991
rosa_laevigata	RLG00000000713 RLG00000000714 RLG00000014168
rosa_multiflora	Rmu_co8141760.1_g000001 Rmu_sc0000540.1_g000014 Rmu_sc0000540.1_g000017 Rmu_sc0006825.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220550 Rroxscaffold_3G00220590
rosa_rugosa	Rorug06G0018400 Rorug07G0331500
rosa_samantha	Rh6BG140400 Rh6CG137300 Rh6DG123800 Rh7AG485400 Rh7AG485500 Rh7BG458200 Rh7BG458300 Rh7CG502500 Rh7CG502700 Rh7DG470900 Rh7DG471000
rosa_wichuraiana	Rw7G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1080
Acc16I	TGCGCA	1 cut(s)	242
Acc36I	ACCTGC	2 cut(s)	505, 1080
AccB1I	GGYRCC	2 cut(s)	4, 404
AccB7I	CCANNNNNTGG	1 cut(s)	621
AccI	GTMKAC	2 cut(s)	420, 694
AccII	CGCG	1 cut(s)	650
AciI	CCGC	3 cut(s)	402, 648, 1075
AclWI	GGATC	4 cut(s)	211, 223, 383, 396
AcoI	YGGCCR	2 cut(s)	37, 645
AcsI	RAATTY	2 cut(s)	639, 1016
AfaI	GTAC	4 cut(s)	48, 113, 291, 857
AfiI	CCNNNNNNNGG	1 cut(s)	621
AgsI	TTSAA	8 cut(s)	21, 168, 415, 428, 481, 565, 758, 1031
AjnI	CCWGG	2 cut(s)	231, 270
AlwI	GGATC	4 cut(s)	211, 223, 383, 396
AlwNI	CAGNNNCTG	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	540
AoxI	GGCC	5 cut(s)	37, 612, 645, 751, 979
ApeKI	GCWGC	3 cut(s)	238, 794, 1043
ApoI	RAATTY	2 cut(s)	639, 1016
Asp700I	GAANNNNTTC	2 cut(s)	365, 432
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	2 cut(s)	625, 926
AsuC2I	CCSGG	2 cut(s)	662, 801
AsuHPI	GGTGA	5 cut(s)	286, 733, 799, 836, 1061
AvaI	CYCGRG	1 cut(s)	540
AvaII	GGWCC	2 cut(s)	625, 926
BaeGI	GKGCMC	2 cut(s)	671, 921
BalI	TGGCCA	1 cut(s)	39
BamHI	GGATCC	1 cut(s)	388
BanI	GGYRCC	2 cut(s)	4, 404
BbvI	GCAGC	3 cut(s)	225, 781, 1030
BccI	CCATC	2 cut(s)	182, 739
BciT130I	CCWGG	2 cut(s)	233, 272
BciVI	GTATCC	1 cut(s)	497
BclI	TGATCA	1 cut(s)	211
BcnI	CCSGG	2 cut(s)	662, 801
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	9
BfuAI	ACCTGC	2 cut(s)	505, 1080
BfuI	GTATCC	1 cut(s)	497
BisI	GCNGC	5 cut(s)	239, 403, 648, 795, 1044
BlsI	GCNGC	5 cut(s)	240, 404, 649, 796, 1045
Bme1390I	CCNGG	4 cut(s)	233, 272, 662, 801
Bme18I	GGWCC	2 cut(s)	625, 926
BmeT110I	CYCGRG	1 cut(s)	540
BmgT120I	GGNCC	2 cut(s)	625, 926
BmiI	GGNNCC	6 cut(s)	6, 380, 390, 406, 626, 928
BmrFI	CCNGG	4 cut(s)	233, 272, 662, 801
BmrI	ACTGGG	1 cut(s)	631
BmsI	GCATC	4 cut(s)	38, 72, 136, 294
BmuI	ACTGGG	1 cut(s)	631
BplI	GAGNNNNNCTC	2 cut(s)	467, 499
BpmI	CTGGAG	2 cut(s)	463, 542
Bpu10I	CCTNAGC	1 cut(s)	583
BpuEI	CTTGAG	1 cut(s)	440
BpuMI	CCSGG	2 cut(s)	662, 801
BsaJI	CCNNGG	3 cut(s)	283, 628, 922
Bsc4I	CCNNNNNNNGG	1 cut(s)	621
Bse1I	ACTGG	3 cut(s)	626, 723, 939
BseBI	CCWGG	2 cut(s)	233, 272
BseDI	CCNNGG	3 cut(s)	283, 628, 922
BseLI	CCNNNNNNNGG	1 cut(s)	621
BseMII	CTCAG	3 cut(s)	96, 99, 465
BseNI	ACTGG	3 cut(s)	626, 723, 939
BseRI	GAGGAG	5 cut(s)	365, 368, 690, 719, 990
BseSI	GKGCMC	2 cut(s)	671, 921
BseXI	GCAGC	3 cut(s)	225, 781, 1030
Bsh1236I	CGCG	1 cut(s)	650
BshFI	GGCC	5 cut(s)	39, 614, 647, 753, 981
BshNI	GGYRCC	2 cut(s)	4, 404
BsiHKCI	CYCGRG	1 cut(s)	540
BsiSI	CCGG	3 cut(s)	347, 662, 800
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	1 cut(s)	621
BsmFI	GGGAC	1 cut(s)	638
BsmI	GAATGC	2 cut(s)	163, 796
BsnI	GGCC	5 cut(s)	39, 614, 647, 753, 981
BsoBI	CYCGRG	1 cut(s)	540
Bsp1286I	GDGCHC	2 cut(s)	671, 921
Bsp143I	GATC	8 cut(s)	203, 211, 228, 315, 340, 388, 709, 1066
Bsp19I	CCATGG	1 cut(s)	922
BspACI	CCGC	3 cut(s)	402, 648, 1075
BspANI	GGCC	5 cut(s)	39, 614, 647, 753, 981
BspCNI	CTCAG	3 cut(s)	95, 100, 466
BspFNI	CGCG	1 cut(s)	650
BspLI	GGNNCC	6 cut(s)	6, 380, 390, 406, 626, 928
BspMI	ACCTGC	2 cut(s)	505, 1080
BspPI	GGATC	4 cut(s)	211, 223, 383, 396
BspT107I	GGYRCC	2 cut(s)	4, 404
BsrI	ACTGG	3 cut(s)	626, 723, 939
BssECI	CCNNGG	3 cut(s)	283, 628, 922
BssMI	GATC	8 cut(s)	203, 211, 228, 315, 340, 388, 709, 1066
BssT1I	CCWWGG	1 cut(s)	922
Bst2UI	CCWGG	2 cut(s)	233, 272
Bst4CI	ACNGT	3 cut(s)	13, 287, 629
BstAPI	GCANNNNNTGC	2 cut(s)	249, 1040
BstC8I	GCNNGC	4 cut(s)	61, 250, 667, 1036
BstDEI	CTNAG	5 cut(s)	82, 108, 474, 583, 1063
BstDSI	CCRYGG	3 cut(s)	283, 628, 922
BstEII	GGTNACC	3 cut(s)	274, 721, 824
BstFNI	CGCG	1 cut(s)	650
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	8 cut(s)	206, 214, 231, 318, 343, 391, 712, 1069
BstMBI	GATC	8 cut(s)	203, 211, 228, 315, 340, 388, 709, 1066
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 249, 408, 803, 1040, 1081
BstNI	CCWGG	2 cut(s)	233, 272
BstPI	GGTNACC	3 cut(s)	274, 721, 824
BstSCI	CCNGG	4 cut(s)	231, 270, 660, 799
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	2 cut(s)	671, 921
BstUI	CGCG	1 cut(s)	650
BstV1I	GCAGC	3 cut(s)	225, 781, 1030
BstX2I	RGATCY	2 cut(s)	203, 388
BstYI	RGATCY	2 cut(s)	203, 388
BsuI	GTATCC	1 cut(s)	497
BsuRI	GGCC	5 cut(s)	39, 614, 647, 753, 981
BtgI	CCRYGG	3 cut(s)	283, 628, 922
BtgZI	GCGATG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	932
BveI	ACCTGC	2 cut(s)	505, 1080
Cac8I	GCNNGC	4 cut(s)	61, 250, 667, 1036
CaiI	CAGNNNCTG	1 cut(s)	238
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	2 cut(s)	625, 926
Csp6I	GTAC	4 cut(s)	47, 112, 290, 856
CviAII	CATG	4 cut(s)	41, 713, 923, 1021
CviQI	GTAC	4 cut(s)	47, 112, 290, 856
DdeI	CTNAG	5 cut(s)	82, 108, 474, 583, 1063
DpnI	GATC	8 cut(s)	205, 213, 230, 317, 342, 390, 711, 1068
DpnII	GATC	8 cut(s)	203, 211, 228, 315, 340, 388, 709, 1066
EaeI	YGGCCR	2 cut(s)	37, 645
Eco130I	CCWWGG	1 cut(s)	922
Eco32I	GATATC	1 cut(s)	906
Eco47I	GGWCC	2 cut(s)	625, 926
Eco88I	CYCGRG	1 cut(s)	540
Eco91I	GGTNACC	3 cut(s)	274, 721, 824
EcoO65I	GGTNACC	3 cut(s)	274, 721, 824
EcoRII	CCWGG	2 cut(s)	231, 270
EcoRV	GATATC	1 cut(s)	906
EcoT14I	CCWWGG	1 cut(s)	922
ErhI	CCWWGG	1 cut(s)	922
FaeI	CATG	4 cut(s)	44, 716, 926, 1024
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	4 cut(s)	40, 712, 922, 1020
FauI	CCCGC	1 cut(s)	1068
FauNDI	CATATG	2 cut(s)	866, 1009
FbaI	TGATCA	1 cut(s)	211
FblI	GTMKAC	2 cut(s)	420, 694
Fnu4HI	GCNGC	5 cut(s)	239, 403, 648, 795, 1044
Fsp4HI	GCNGC	5 cut(s)	239, 403, 648, 795, 1044
FspBI	CTAG	1 cut(s)	74
FspI	TGCGCA	1 cut(s)	242
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	5 cut(s)	239, 403, 648, 795, 1044
GsuI	CTGGAG	2 cut(s)	463, 542
HaeIII	GGCC	5 cut(s)	39, 614, 647, 753, 981
HapII	CCGG	3 cut(s)	347, 662, 800
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	4 cut(s)	44, 716, 926, 1024
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HincII	GTYRAC	2 cut(s)	421, 817
HindII	GTYRAC	2 cut(s)	421, 817
HinfI	GANTC	2 cut(s)	80, 333
HpaI	GTTAAC	1 cut(s)	817
HpaII	CCGG	3 cut(s)	347, 662, 800
HphI	GGTGA	5 cut(s)	286, 733, 799, 836, 1061
Hpy166II	GTNNAC	6 cut(s)	114, 290, 421, 695, 817, 886
Hpy188I	TCNGA	4 cut(s)	109, 320, 577, 738
Hpy188III	TCNNGA	3 cut(s)	209, 442, 1051
Hpy8I	GTNNAC	6 cut(s)	114, 290, 421, 695, 817, 886
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	3 cut(s)	114, 355, 559
HpyCH4III	ACNGT	3 cut(s)	13, 287, 629
HpyCH4IV	ACGT	2 cut(s)	197, 417
HpyCH4V	TGCA	3 cut(s)	149, 307, 835
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 249, 408, 803, 1040, 1081
HpyF3I	CTNAG	5 cut(s)	82, 108, 474, 583, 1063
HpySE526I	ACGT	2 cut(s)	197, 417
Hsp92II	CATG	4 cut(s)	44, 716, 926, 1024
HspAI	GCGC	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	211
KspAI	GTTAAC	1 cut(s)	817
Kzo9I	GATC	8 cut(s)	203, 211, 228, 315, 340, 388, 709, 1066
LmnI	GCTCC	5 cut(s)	235, 320, 802, 803, 1024
Lsp1109I	GCAGC	3 cut(s)	225, 781, 1030
LweI	GCATC	4 cut(s)	38, 72, 136, 294
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	2 cut(s)	197, 417
MaeIII	GTNAC	4 cut(s)	13, 274, 721, 824
MalI	GATC	8 cut(s)	205, 213, 230, 317, 342, 390, 711, 1068
MboI	GATC	8 cut(s)	203, 211, 228, 315, 340, 388, 709, 1066
MboII	GAAGA	2 cut(s)	259, 370
MflI	RGATCY	2 cut(s)	203, 388
MhlI	GDGCHC	2 cut(s)	671, 921
MlsI	TGGCCA	1 cut(s)	39
MluCI	AATT	3 cut(s)	639, 652, 1016
MluNI	TGGCCA	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	2 cut(s)	366, 570
Mox20I	TGGCCA	1 cut(s)	39
MroXI	GAANNNNTTC	2 cut(s)	365, 432
MscI	TGGCCA	1 cut(s)	39
MseI	TTAA	1 cut(s)	816
MslI	CAYNNNNRTG	1 cut(s)	1001
Msp20I	TGGCCA	1 cut(s)	39
MspI	CCGG	3 cut(s)	347, 662, 800
MspR9I	CCNGG	4 cut(s)	233, 272, 662, 801
Mva1269I	GAATGC	2 cut(s)	163, 796
MvaI	CCWGG	2 cut(s)	233, 272
MvnI	CGCG	1 cut(s)	650
MwoI	GCNNNNNNNGC	6 cut(s)	83, 249, 408, 803, 1040, 1081
NciI	CCSGG	2 cut(s)	662, 801
NcoI	CCATGG	1 cut(s)	922
NdeI	CATATG	2 cut(s)	866, 1009
NdeII	GATC	8 cut(s)	203, 211, 228, 315, 340, 388, 709, 1066
NlaIII	CATG	4 cut(s)	44, 716, 926, 1024
NlaIV	GGNNCC	6 cut(s)	6, 380, 390, 406, 626, 928
NmuCI	GTSAC	3 cut(s)	274, 721, 824
NsbI	TGCGCA	1 cut(s)	242
PaqCI	CACCTGC	1 cut(s)	1080
PctI	GAATGC	2 cut(s)	163, 796
PdmI	GAANNNNTTC	2 cut(s)	365, 432
PfeI	GAWTC	1 cut(s)	333
PflMI	CCANNNNNTGG	1 cut(s)	621
PfoI	TCCNGGA	2 cut(s)	231, 799
PkrI	GCNGC	5 cut(s)	240, 404, 649, 796, 1045
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
Psp6I	CCWGG	2 cut(s)	231, 270
PspEI	GGTNACC	3 cut(s)	274, 721, 824
PspGI	CCWGG	2 cut(s)	231, 270
PspN4I	GGNNCC	6 cut(s)	6, 380, 390, 406, 626, 928
PspPI	GGNCC	2 cut(s)	625, 926
PstNI	CAGNNNCTG	1 cut(s)	238
PsuI	RGATCY	2 cut(s)	203, 388
RsaI	GTAC	4 cut(s)	48, 113, 291, 857
RsaNI	GTAC	4 cut(s)	47, 112, 290, 856
RseI	CAYNNNNRTG	1 cut(s)	1001
SalI	GTCGAC	1 cut(s)	419
SaqAI	TTAA	1 cut(s)	816
SatI	GCNGC	5 cut(s)	239, 403, 648, 795, 1044
Sau3AI	GATC	8 cut(s)	203, 211, 228, 315, 340, 388, 709, 1066
Sau96I	GGNCC	2 cut(s)	625, 926
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	4 cut(s)	233, 272, 662, 801
SduI	GDGCHC	2 cut(s)	671, 921
SfaNI	GCATC	4 cut(s)	38, 72, 136, 294
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	2 cut(s)	625, 926
SmiMI	CAYNNNNRTG	1 cut(s)	1001
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	3 cut(s)	639, 652, 1016
SsiI	CCGC	3 cut(s)	402, 648, 1075
SspI	AATATT	1 cut(s)	561
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	4 cut(s)	231, 270, 660, 799
StyI	CCWWGG	1 cut(s)	922
TaaI	ACNGT	3 cut(s)	13, 287, 629
TaiI	ACGT	2 cut(s)	200, 420
TaqI	TCGA	1 cut(s)	420
TaqII	GACCGA	1 cut(s)	680
TasI	AATT	3 cut(s)	639, 652, 1016
TatI	WGTACW	2 cut(s)	111, 855
TauI	GCSGC	2 cut(s)	405, 650
TfiI	GAWTC	1 cut(s)	333
Tru1I	TTAA	1 cut(s)	816
Tru9I	TTAA	1 cut(s)	816
TscAI	CASTG	1 cut(s)	939
TseFI	GTSAC	3 cut(s)	274, 721, 824
TseI	GCWGC	3 cut(s)	238, 794, 1043
Tsp45I	GTSAC	3 cut(s)	274, 721, 824
TspDTI	ATGAA	4 cut(s)	57, 150, 425, 1009
TspRI	CASTG	1 cut(s)	939
Van91I	CCANNNNNTGG	1 cut(s)	621
VpaK11BI	GGWCC	2 cut(s)	625, 926
XapI	RAATTY	2 cut(s)	639, 1016
XmiI	GTMKAC	2 cut(s)	420, 694
XmnI	GAANNNNTTC	2 cut(s)	365, 432
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.