Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010500

Physical Location & Seq

Genomic Coordinates Reverse (-)

61685 .. 68147

Gene Structure 6463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGAAACTCAAACTCTGAGTGATGTGGGATGGTTCATTCTCGGTGAAAATCAACAACACCTTGGGCCCTACGCATTCTCAGAGCTGCGCGAGCACTTGTTAAATGGCTACCTCACCCACACTACGCTGGTCTGGTCTCAAGGAAGAAGCGAATGGCAGCCACTCTCCTCCATTCCTGATTTGGTCTCCCAAATTACTCCACAAATTCCAGTGCCCCCCAGTGACAACGATGATGACTTTGAAAAATGGCAGAAGCAGATTACGGAGGCAGAACAAGCAGATAGTGATAGACCTTCCACACCACCGGAGGGCGAGGAAGAGTTCATTGACGATGATGGCACTCAGTATAAGTGGGATCGGGGTCTTAGGGCTTGGGTTCCTGAGGATAGCATGTTTGGGGTAGAGGATATGACTTTCTTGCAAGAAGAGGAAGTCTTTACGAATGTGAAACTTTCTAATGACTCTTCAAGGGAGGAAGTTAATGCAACCGGAAATTTTTCTGATCCTCCTAAAGAGAAAGACACGAATGTTAACCGTGAGGTAGAAGAAGGGATTCCAAATTCAAAGAGAAAACTATCGGATGTGGAAGATGTCAAAAAGGAAGCTAATAAACCTCCTGATAGTTGGTTTGAGCTAAAGGTCAATTCACACGTTTATGTGACTGGATTACCTGATGATGTTACAGTTGACGAAGTGGTAGAGGTGTTTTCAAAGTGTGGGATAATAAAAGAGGATCCTGAATCAAAAAAGCCTCGTGTGAAGTTGTATACTGATAAAGCGACTGGAAAGATAAAGGGAGATGCACTTGTTACATATCTGAAGGAGCCCTCAGTTGATTTAGCTCTCAAAATTTTGGACGGAACACCTCTGCGTCTTGGTGGCAAGGTTCTCATGTCAGTCAGCCGAGCTAAGTTTGAGCAGAAAGGGGATAGATTTATTGCCAAACAAGCAGACAACAAGAGGAAAAAAAAATTGAAGAAGGTGGAAGAGAAGATGCTTGGCTGGGGTGGTCGTGATGATGCAAAACTGTTGATTCCAACTACTGTTCTTCTTCGTTATATGTTCACAACTGCTGAAATGAGGGCAGATGAAAACTTATGTACAGAGTTGCAGGCAGATGTTGAAGAGGAATGTCAGAAGCTTGGTCCCGTGGACTCAGTCAAGGTTTGTGAGAATCATCCTGAAGGTGTTGTTTTGGTTTGGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339 RRM_1

Protein Analysis

403

Amino Acids

45.62

Weight (kDa)

4.74

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GYF_2	PF14237	11 - 61	4.3e-16	GYF domain 2
RRM_1	PF00076	218 - 290	3.1e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16260
fragaria_vesca	FvH4_6g00060
malus_domestica	MD00G1017100.v1.1 MD12G1261400.v1.1
prunus_persica	Prupe.6G365400_v2.0.a1 Prupe.6G365400_v2.0.a1 Prupe.6G365400_v2.0.a1
pyrus_communis	pycom02g06260 pycom04g22010 pycom04g22020 pycom12g24240
rosa_chinensis	RchiOBHm_Chr3g0447391
rosa_laevigata	RLG00000026003
rosa_multiflora	Rmu_ssc0000473.1_g000016
rosa_roxburghii	Rroxscaffold_6G00425590
rosa_rugosa	Rorug02G0601100
rosa_samantha	Rh3AG001200 Rh3BG000900 Rh3CG000900 Rh3DG001100
rosa_wichuraiana	Rw3G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	767
AccII	CGCG	1 cut(s)	90
AclWI	GGATC	4 cut(s)	363, 497, 728, 741
AcsI	RAATTY	4 cut(s)	204, 493, 559, 849
AcuI	CTGAAG	2 cut(s)	839, 1203
AfaI	GTAC	1 cut(s)	1102
AfiI	CCNNNNNNNGG	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	649
AgsI	TTSAA	6 cut(s)	242, 468, 564, 711, 976, 1124
AluBI	AGCT	6 cut(s)	85, 605, 634, 842, 908, 1141
AluI	AGCT	6 cut(s)	85, 605, 634, 842, 908, 1141
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	2 cut(s)	141, 190
AlwI	GGATC	4 cut(s)	363, 497, 728, 741
AoxI	GGCC	1 cut(s)	65
ApaI	GGGCCC	1 cut(s)	69
ApeKI	GCWGC	2 cut(s)	85, 157
ApoI	RAATTY	4 cut(s)	204, 493, 559, 849
Asp700I	GAANNNNTTC	2 cut(s)	496, 552
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	3 cut(s)	65, 66, 1145
AsuHPI	GGTGA	2 cut(s)	56, 106
AvaII	GGWCC	1 cut(s)	1145
AxyI	CCTNAGG	1 cut(s)	381
BaeGI	GKGCMC	2 cut(s)	69, 216
BamHI	GGATCC	1 cut(s)	733
BanII	GRGCYC	2 cut(s)	69, 828
BauI	CACGAG	1 cut(s)	753
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	72, 169
BccI	CCATC	2 cut(s)	24, 329
BcoDI	GTCTC	2 cut(s)	141, 190
BisI	GCNGC	2 cut(s)	86, 158
BlsI	GCNGC	2 cut(s)	87, 159
Bme18I	GGWCC	1 cut(s)	1145
BmgT120I	GGNCC	3 cut(s)	65, 66, 1145
BmiI	GGNNCC	5 cut(s)	67, 378, 735, 825, 1147
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	3 cut(s)	790, 984, 1009
BmuI	ACTGGG	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	123
BsaI	GGTCTC	2 cut(s)	141, 190
BsaJI	CCNNGG	2 cut(s)	61, 1149
BsaWI	WCCGGW	2 cut(s)	304, 488
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse1I	ACTGG	4 cut(s)	209, 219, 667, 787
Bse21I	CCTNAGG	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	61, 1149
BseGI	GGATG	3 cut(s)	35, 586, 1177
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMII	CTCAG	6 cut(s)	8, 93, 356, 372, 843, 1170
BseNI	ACTGG	4 cut(s)	209, 219, 667, 787
BseRI	GAGGAG	1 cut(s)	157
BseSI	GKGCMC	2 cut(s)	69, 216
BseXI	GCAGC	2 cut(s)	72, 169
BseYI	CCCAGC	1 cut(s)	1002
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	2 cut(s)	305, 489
BslFI	GGGAC	1 cut(s)	1131
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	2 cut(s)	141, 190
BsmFI	GGGAC	1 cut(s)	1131
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	67
Bso31I	GGTCTC	2 cut(s)	141, 190
Bsp120I	GGGCCC	1 cut(s)	65
Bsp1286I	GDGCHC	4 cut(s)	69, 96, 216, 828
Bsp1407I	TGTACA	1 cut(s)	1100
Bsp143I	GATC	3 cut(s)	355, 502, 733
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	6 cut(s)	9, 92, 355, 373, 842, 1169
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	5 cut(s)	67, 378, 735, 825, 1147
BspPI	GGATC	4 cut(s)	363, 497, 728, 741
BspTNI	GGTCTC	2 cut(s)	141, 190
BsrGI	TGTACA	1 cut(s)	1100
BsrI	ACTGG	4 cut(s)	209, 219, 667, 787
BssECI	CCNNGG	2 cut(s)	61, 1149
BssMI	GATC	3 cut(s)	355, 502, 733
BssNAI	GTATAC	1 cut(s)	768
BssSI	CACGAG	1 cut(s)	753
BssT1I	CCWWGG	1 cut(s)	61
Bst1107I	GTATAC	1 cut(s)	768
Bst2BI	CACGAG	1 cut(s)	753
Bst4CI	ACNGT	4 cut(s)	536, 685, 1029, 1045
Bst6I	CTCTTC	5 cut(s)	312, 420, 469, 981, 1119
BstAUI	TGTACA	1 cut(s)	1100
BstC8I	GCNNGC	2 cut(s)	92, 1113
BstDEI	CTNAG	8 cut(s)	17, 79, 342, 365, 381, 829, 909, 1156
BstDSI	CCRYGG	1 cut(s)	1149
BstF5I	GGATG	3 cut(s)	35, 586, 1177
BstFNI	CGCG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	3 cut(s)	358, 505, 736
BstMAI	GTCTC	2 cut(s)	141, 190
BstMBI	GATC	3 cut(s)	355, 502, 733
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 275, 947
BstNSI	RCATGY	1 cut(s)	394
BstSLI	GKGCMC	2 cut(s)	69, 216
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	72, 169
BstX2I	RGATCY	1 cut(s)	733
BstYI	RGATCY	1 cut(s)	733
BstZ17I	GTATAC	1 cut(s)	768
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	67
BtgI	CCRYGG	1 cut(s)	1149
BtsCI	GGATG	3 cut(s)	35, 586, 1177
BtsIMutI	CAGTG	2 cut(s)	216, 226
Cac8I	GCNNGC	2 cut(s)	92, 1113
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	3 cut(s)	65, 66, 1145
CseI	GACGC	1 cut(s)	860
Csp6I	GTAC	1 cut(s)	1101
CviAII	CATG	2 cut(s)	391, 892
CviQI	GTAC	1 cut(s)	1101
DdeI	CTNAG	8 cut(s)	17, 79, 342, 365, 381, 829, 909, 1156
DpnI	GATC	3 cut(s)	357, 504, 735
DpnII	GATC	3 cut(s)	355, 502, 733
Eam1104I	CTCTTC	5 cut(s)	312, 420, 469, 981, 1119
EarI	CTCTTC	5 cut(s)	312, 420, 469, 981, 1119
Eco130I	CCWWGG	1 cut(s)	61
Eco24I	GRGCYC	2 cut(s)	69, 828
Eco31I	GGTCTC	2 cut(s)	141, 190
Eco47I	GGWCC	1 cut(s)	1145
Eco57I	CTGAAG	2 cut(s)	839, 1203
Eco81I	CCTNAGG	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	61
EcoT38I	GRGCYC	2 cut(s)	69, 828
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	2 cut(s)	394, 895
FaqI	GGGAC	1 cut(s)	1131
FatI	CATG	2 cut(s)	390, 891
FblI	GTMKAC	1 cut(s)	767
Fnu4HI	GCNGC	2 cut(s)	86, 158
FokI	GGATG	3 cut(s)	42, 593, 1164
FriOI	GRGCYC	2 cut(s)	69, 828
Fsp4HI	GCNGC	2 cut(s)	86, 158
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	2 cut(s)	86, 158
GsaI	CCCAGC	1 cut(s)	1006
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	2 cut(s)	305, 489
HgaI	GACGC	1 cut(s)	860
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	394, 895
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	2 cut(s)	532, 688
HindII	GTYRAC	2 cut(s)	532, 688
HindIII	AAGCTT	1 cut(s)	1139
HinfI	GANTC	6 cut(s)	461, 553, 740, 1033, 1154, 1174
HpaI	GTTAAC	1 cut(s)	532
HpaII	CCGG	2 cut(s)	305, 489
HphI	GGTGA	2 cut(s)	56, 106
Hpy166II	GTNNAC	5 cut(s)	532, 688, 768, 1065, 1153
Hpy188I	TCNGA	6 cut(s)	18, 82, 502, 580, 819, 1137
Hpy188III	TCNNGA	6 cut(s)	176, 380, 617, 737, 1013, 1181
Hpy8I	GTNNAC	5 cut(s)	532, 688, 768, 1065, 1153
HpyAV	CCTTC	5 cut(s)	303, 542, 814, 973, 1178
HpyCH4III	ACNGT	4 cut(s)	536, 685, 1029, 1045
HpyCH4IV	ACGT	1 cut(s)	651
HpyCH4V	TGCA	5 cut(s)	421, 485, 803, 1022, 1111
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 275, 947
HpyF3I	CTNAG	8 cut(s)	17, 79, 342, 365, 381, 829, 909, 1156
HpySE526I	ACGT	1 cut(s)	651
Hsp92II	CATG	2 cut(s)	394, 895
HspAI	GCGC	1 cut(s)	88
KspAI	GTTAAC	1 cut(s)	532
Kzo9I	GATC	3 cut(s)	355, 502, 733
LmnI	GCTCC	1 cut(s)	823
Lsp1109I	GCAGC	2 cut(s)	72, 169
LweI	GCATC	3 cut(s)	790, 984, 1009
MaeII	ACGT	1 cut(s)	651
MaeIII	GTNAC	4 cut(s)	221, 658, 679, 808
MalI	GATC	3 cut(s)	357, 504, 735
MboI	GATC	3 cut(s)	355, 502, 733
MflI	RGATCY	1 cut(s)	733
MhlI	GDGCHC	4 cut(s)	69, 96, 216, 828
MluCI	AATT	7 cut(s)	192, 204, 493, 559, 643, 849, 971
MlyI	GAGTC	2 cut(s)	455, 1148
MmeI	TCCRAC	1 cut(s)	1061
MroXI	GAANNNNTTC	2 cut(s)	496, 552
MseI	TTAA	3 cut(s)	101, 480, 531
MslI	CAYNNNNRTG	1 cut(s)	654
MspI	CCGG	2 cut(s)	305, 489
Mva1269I	GAATGC	1 cut(s)	74
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	3 cut(s)	91, 275, 947
NdeII	GATC	3 cut(s)	355, 502, 733
NlaIII	CATG	2 cut(s)	394, 895
NlaIV	GGNNCC	5 cut(s)	67, 378, 735, 825, 1147
NmeAIII	GCCGAG	1 cut(s)	929
NmuCI	GTSAC	2 cut(s)	221, 658
NspI	RCATGY	1 cut(s)	394
PctI	GAATGC	1 cut(s)	74
PdmI	GAANNNNTTC	2 cut(s)	496, 552
PfeI	GAWTC	4 cut(s)	553, 740, 1033, 1174
PflFI	GACNNNGTC	1 cut(s)	1157
PkrI	GCNGC	2 cut(s)	87, 159
PleI	GAGTC	2 cut(s)	455, 1148
PpsI	GAGTC	2 cut(s)	455, 1148
PspFI	CCCAGC	1 cut(s)	1002
PspN4I	GGNNCC	5 cut(s)	67, 378, 735, 825, 1147
PspOMI	GGGCCC	1 cut(s)	65
PspPI	GGNCC	3 cut(s)	65, 66, 1145
PsuI	RGATCY	1 cut(s)	733
PsyI	GACNNNGTC	1 cut(s)	1157
RsaI	GTAC	1 cut(s)	1102
RsaNI	GTAC	1 cut(s)	1101
RseI	CAYNNNNRTG	1 cut(s)	654
SaqAI	TTAA	3 cut(s)	101, 480, 531
SatI	GCNGC	2 cut(s)	86, 158
Sau3AI	GATC	3 cut(s)	355, 502, 733
Sau96I	GGNCC	3 cut(s)	65, 66, 1145
SchI	GAGTC	2 cut(s)	455, 1148
SduI	GDGCHC	4 cut(s)	69, 96, 216, 828
SfaNI	GCATC	3 cut(s)	790, 984, 1009
SinI	GGWCC	1 cut(s)	1145
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	7 cut(s)	192, 204, 493, 559, 643, 849, 971
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	4 cut(s)	536, 685, 1029, 1045
TaiI	ACGT	1 cut(s)	654
TasI	AATT	7 cut(s)	192, 204, 493, 559, 643, 849, 971
TatI	WGTACW	1 cut(s)	1100
TfiI	GAWTC	4 cut(s)	553, 740, 1033, 1174
Tru1I	TTAA	3 cut(s)	101, 480, 531
Tru9I	TTAA	3 cut(s)	101, 480, 531
TscAI	CASTG	2 cut(s)	216, 226
TseFI	GTSAC	2 cut(s)	221, 658
TseI	GCWGC	2 cut(s)	85, 157
Tsp45I	GTSAC	2 cut(s)	221, 658
TspDTI	ATGAA	3 cut(s)	25, 313, 1104
TspGWI	ACGGA	2 cut(s)	278, 873
TspRI	CASTG	2 cut(s)	216, 226
Tth111I	GACNNNGTC	1 cut(s)	1157
VpaK11BI	GGWCC	1 cut(s)	1145
XapI	RAATTY	4 cut(s)	204, 493, 559, 849
XceI	RCATGY	1 cut(s)	394
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	767
XmnI	GAANNNNTTC	2 cut(s)	496, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.