Splicing factor U2AF-associated protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G16260 |
| fragaria_vesca | FvH4_6g00060 |
| malus_domestica | MD00G1017100.v1.1 MD12G1261400.v1.1 |
| prunus_persica | Prupe.6G365400_v2.0.a1 Prupe.6G365400_v2.0.a1 Prupe.6G365400_v2.0.a1 |
| pyrus_communis | pycom02g06260 pycom04g22010 pycom04g22020 pycom12g24240 |
| rosa_chinensis | RchiOBHm_Chr3g0447391 |
| rosa_laevigata | RLG00000026003 |
| rosa_multiflora | Rmu_ssc0000473.1_g000016 |
| rosa_roxburghii | Rroxscaffold_6G00425590 |
| rosa_rugosa | Rorug02G0601100 |
| rosa_samantha | Rh3AG001200 Rh3BG000900 Rh3CG000900 Rh3DG001100 |
| rosa_wichuraiana | Rw3G000060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1648 |
| AccI | GTMKAC | 1 cut(s) | 1103 |
| AccII | CGCG | 2 cut(s) | 198, 429 |
| AccIII | TCCGGA | 1 cut(s) | 1653 |
| AciI | CCGC | 2 cut(s) | 198, 638 |
| AclWI | GGATC | 4 cut(s) | 699, 833, 1064, 1077 |
| AcsI | RAATTY | 6 cut(s) | 120, 351, 828, 895, 1185, 1429 |
| AcuI | CTGAAG | 1 cut(s) | 1331 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 560, 644, 1053, 1648, 1660 |
| AflIII | ACRYGT | 2 cut(s) | 985, 1395 |
| AgsI | TTSAA | 5 cut(s) | 633, 804, 900, 1156, 1543 |
| AjnI | CCWGG | 1 cut(s) | 1518 |
| AluBI | AGCT | 6 cut(s) | 941, 970, 1099, 1244, 1376, 1477 |
| AluI | AGCT | 6 cut(s) | 941, 970, 1099, 1244, 1376, 1477 |
| Alw26I | GTCTC | 1 cut(s) | 239 |
| AlwI | GGATC | 4 cut(s) | 699, 833, 1064, 1077 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 502, 1379 |
| Aor13HI | TCCGGA | 1 cut(s) | 1653 |
| AoxI | GGCC | 1 cut(s) | 219 |
| ApeKI | GCWGC | 3 cut(s) | 70, 301, 496 |
| ApoI | RAATTY | 6 cut(s) | 120, 351, 828, 895, 1185, 1429 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 832 |
| AspLEI | GCGC | 3 cut(s) | 198, 429, 1421 |
| AspS9I | GGNCC | 5 cut(s) | 173, 220, 404, 1481, 1651 |
| AsuHPI | GGTGA | 5 cut(s) | 164, 395, 445, 517, 1228 |
| AvaII | GGWCC | 4 cut(s) | 173, 404, 1481, 1651 |
| AxyI | CCTNAGG | 1 cut(s) | 717 |
| BaeGI | GKGCMC | 1 cut(s) | 555 |
| BamHI | GGATCC | 1 cut(s) | 1069 |
| BanII | GRGCYC | 1 cut(s) | 1164 |
| BauI | CACGAG | 1 cut(s) | 1089 |
| BbsI | GAAGAC | 2 cut(s) | 763, 861 |
| BbvI | GCAGC | 3 cut(s) | 82, 313, 508 |
| BccI | CCATC | 8 cut(s) | 97, 132, 328, 363, 665, 1187, 1584, 1622 |
| BceAI | ACGGC | 3 cut(s) | 37, 83, 274 |
| BciT130I | CCWGG | 1 cut(s) | 1520 |
| BciVI | GTATCC | 1 cut(s) | 910 |
| BcoDI | GTCTC | 1 cut(s) | 239 |
| BfmI | CTRYAG | 1 cut(s) | 299 |
| BfuI | GTATCC | 1 cut(s) | 910 |
| BisI | GCNGC | 3 cut(s) | 71, 302, 497 |
| BlsI | GCNGC | 3 cut(s) | 72, 303, 498 |
| Bme1390I | CCNGG | 1 cut(s) | 1520 |
| Bme18I | GGWCC | 4 cut(s) | 173, 404, 1481, 1651 |
| BmgT120I | GGNCC | 5 cut(s) | 173, 220, 404, 1481, 1651 |
| BmiI | GGNNCC | 9 cut(s) | 82, 175, 222, 313, 406, 714, 1071, 1161, 1483 |
| BmrFI | CCNGG | 1 cut(s) | 1520 |
| BmrI | ACTGGG | 3 cut(s) | 225, 542, 552 |
| BmsI | GCATC | 5 cut(s) | 808, 1126, 1320, 1345, 1660 |
| BmuI | ACTGGG | 3 cut(s) | 225, 542, 552 |
| BpiI | GAAGAC | 2 cut(s) | 763, 861 |
| Bsa29I | ATCGAT | 1 cut(s) | 663 |
| BsaAI | YACGTR | 1 cut(s) | 1436 |
| BsaJI | CCNNGG | 3 cut(s) | 1485, 1518, 1519 |
| BsaWI | WCCGGW | 1 cut(s) | 1653 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 560, 644, 1053, 1648, 1660 |
| Bse1I | ACTGG | 6 cut(s) | 231, 548, 558, 829, 1003, 1123 |
| Bse21I | CCTNAGG | 1 cut(s) | 717 |
| BseAI | TCCGGA | 1 cut(s) | 1653 |
| BseBI | CCWGG | 1 cut(s) | 1520 |
| BseCI | ATCGAT | 1 cut(s) | 663 |
| BseDI | CCNNGG | 3 cut(s) | 1485, 1518, 1519 |
| BseGI | GGATG | 6 cut(s) | 143, 374, 1198, 1513, 1630, 1669 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 560, 644, 1053, 1648, 1660 |
| BseMII | CTCAG | 3 cut(s) | 731, 1179, 1506 |
| BseNI | ACTGG | 6 cut(s) | 231, 548, 558, 829, 1003, 1123 |
| BseRI | GAGGAG | 3 cut(s) | 755, 824, 1475 |
| BseSI | GKGCMC | 1 cut(s) | 555 |
| BseXI | GCAGC | 3 cut(s) | 82, 313, 508 |
| BseYI | CCCAGC | 1 cut(s) | 1338 |
| BsgI | GTGCAG | 1 cut(s) | 1458 |
| Bsh1236I | CGCG | 2 cut(s) | 198, 429 |
| BshFI | GGCC | 1 cut(s) | 221 |
| BshVI | ATCGAT | 1 cut(s) | 663 |
| BsiSI | CCGG | 1 cut(s) | 1654 |
| BslFI | GGGAC | 3 cut(s) | 159, 390, 1467 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 560, 644, 1053, 1648, 1660 |
| BsmAI | GTCTC | 1 cut(s) | 239 |
| BsmFI | GGGAC | 3 cut(s) | 159, 390, 1467 |
| BsmI | GAATGC | 1 cut(s) | 784 |
| BsnI | GGCC | 1 cut(s) | 221 |
| Bsp1286I | GDGCHC | 2 cut(s) | 555, 1164 |
| Bsp13I | TCCGGA | 1 cut(s) | 1653 |
| Bsp143I | GATC | 3 cut(s) | 691, 838, 1069 |
| BspACI | CCGC | 2 cut(s) | 198, 638 |
| BspANI | GGCC | 1 cut(s) | 221 |
| BspCNI | CTCAG | 3 cut(s) | 730, 1178, 1505 |
| BspDI | ATCGAT | 1 cut(s) | 663 |
| BspEI | TCCGGA | 1 cut(s) | 1653 |
| BspFNI | CGCG | 2 cut(s) | 198, 429 |
| BspHI | TCATGA | 1 cut(s) | 774 |
| BspLI | GGNNCC | 9 cut(s) | 82, 175, 222, 313, 406, 714, 1071, 1161, 1483 |
| BspMAI | CTGCAG | 1 cut(s) | 303 |
| BspPI | GGATC | 4 cut(s) | 699, 833, 1064, 1077 |
| BsrI | ACTGG | 6 cut(s) | 231, 548, 558, 829, 1003, 1123 |
| BssECI | CCNNGG | 3 cut(s) | 1485, 1518, 1519 |
| BssMI | GATC | 3 cut(s) | 691, 838, 1069 |
| BssNAI | GTATAC | 1 cut(s) | 1104 |
| BssSI | CACGAG | 1 cut(s) | 1089 |
| Bst1107I | GTATAC | 1 cut(s) | 1104 |
| Bst2BI | CACGAG | 1 cut(s) | 1089 |
| Bst2UI | CCWGG | 1 cut(s) | 1520 |
| Bst4CI | ACNGT | 7 cut(s) | 504, 862, 872, 912, 1021, 1365, 1381 |
| Bst6I | CTCTTC | 4 cut(s) | 648, 756, 805, 1317 |
| BstBAI | YACGTR | 1 cut(s) | 1436 |
| BstC8I | GCNNGC | 2 cut(s) | 431, 1449 |
| BstDEI | CTNAG | 7 cut(s) | 603, 701, 717, 1165, 1245, 1492, 1681 |
| BstDSI | CCRYGG | 1 cut(s) | 1485 |
| BstEII | GGTNACC | 1 cut(s) | 523 |
| BstF5I | GGATG | 6 cut(s) | 143, 374, 1198, 1513, 1630, 1669 |
| BstFNI | CGCG | 2 cut(s) | 198, 429 |
| BstHHI | GCGC | 3 cut(s) | 198, 429, 1421 |
| BstKTI | GATC | 3 cut(s) | 694, 841, 1072 |
| BstMAI | GTCTC | 1 cut(s) | 239 |
| BstMBI | GATC | 3 cut(s) | 691, 838, 1069 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 11, 248, 1283 |
| BstNI | CCWGG | 1 cut(s) | 1520 |
| BstNSI | RCATGY | 4 cut(s) | 730, 989, 1399, 1616 |
| BstPI | GGTNACC | 1 cut(s) | 523 |
| BstSCI | CCNGG | 1 cut(s) | 1518 |
| BstSFI | CTRYAG | 1 cut(s) | 299 |
| BstSLI | GKGCMC | 1 cut(s) | 555 |
| BstUI | CGCG | 2 cut(s) | 198, 429 |
| BstV1I | GCAGC | 3 cut(s) | 82, 313, 508 |
| BstV2I | GAAGAC | 2 cut(s) | 763, 861 |
| BstX2I | RGATCY | 1 cut(s) | 1069 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 217, 238 |
| BstYI | RGATCY | 1 cut(s) | 1069 |
| BstZ17I | GTATAC | 1 cut(s) | 1104 |
| Bsu15I | ATCGAT | 1 cut(s) | 663 |
| Bsu36I | CCTNAGG | 1 cut(s) | 717 |
| BsuI | GTATCC | 1 cut(s) | 910 |
| BsuRI | GGCC | 1 cut(s) | 221 |
| BsuTUI | ATCGAT | 1 cut(s) | 663 |
| BtgI | CCRYGG | 1 cut(s) | 1485 |
| BtsCI | GGATG | 6 cut(s) | 143, 374, 1198, 1513, 1630, 1669 |
| BtsIMutI | CAGTG | 4 cut(s) | 500, 555, 565, 858 |
| Cac8I | GCNNGC | 2 cut(s) | 431, 1449 |
| CaiI | CAGNNNCTG | 2 cut(s) | 502, 1379 |
| CciI | TCATGA | 1 cut(s) | 774 |
| CfoI | GCGC | 3 cut(s) | 198, 429, 1421 |
| Cfr13I | GGNCC | 5 cut(s) | 173, 220, 404, 1481, 1651 |
| ClaI | ATCGAT | 1 cut(s) | 663 |
| CseI | GACGC | 1 cut(s) | 1565 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 668, 703 |
| CviAII | CATG | 9 cut(s) | 238, 542, 727, 775, 986, 1228, 1396, 1613, 1643 |
| DdeI | CTNAG | 7 cut(s) | 603, 701, 717, 1165, 1245, 1492, 1681 |
| DpnI | GATC | 3 cut(s) | 693, 840, 1071 |
| DpnII | GATC | 3 cut(s) | 691, 838, 1069 |
| Eam1104I | CTCTTC | 4 cut(s) | 648, 756, 805, 1317 |
| EarI | CTCTTC | 4 cut(s) | 648, 756, 805, 1317 |
| Eco24I | GRGCYC | 1 cut(s) | 1164 |
| Eco47I | GGWCC | 4 cut(s) | 173, 404, 1481, 1651 |
| Eco57I | CTGAAG | 1 cut(s) | 1331 |
| Eco81I | CCTNAGG | 1 cut(s) | 717 |
| Eco91I | GGTNACC | 1 cut(s) | 523 |
| EcoO65I | GGTNACC | 1 cut(s) | 523 |
| EcoRII | CCWGG | 1 cut(s) | 1518 |
| EcoT38I | GRGCYC | 1 cut(s) | 1164 |
| FaeI | CATG | 9 cut(s) | 241, 545, 730, 778, 989, 1231, 1399, 1616, 1646 |
| FaqI | GGGAC | 3 cut(s) | 159, 390, 1467 |
| FatI | CATG | 9 cut(s) | 237, 541, 726, 774, 985, 1227, 1395, 1612, 1642 |
| FblI | GTMKAC | 1 cut(s) | 1103 |
| Fnu4HI | GCNGC | 3 cut(s) | 71, 302, 497 |
| FokI | GGATG | 6 cut(s) | 150, 381, 1205, 1500, 1637, 1676 |
| FriOI | GRGCYC | 1 cut(s) | 1164 |
| Fsp4HI | GCNGC | 3 cut(s) | 71, 302, 497 |
| GlaI | GCGC | 3 cut(s) | 197, 428, 1420 |
| GluI | GCNGC | 3 cut(s) | 71, 302, 497 |
| GsaI | CCCAGC | 1 cut(s) | 1342 |
| HaeIII | GGCC | 1 cut(s) | 221 |
| HapII | CCGG | 1 cut(s) | 1654 |
| HgaI | GACGC | 1 cut(s) | 1565 |
| HhaI | GCGC | 3 cut(s) | 198, 429, 1421 |
| Hin1II | CATG | 9 cut(s) | 241, 545, 730, 778, 989, 1231, 1399, 1616, 1646 |
| Hin6I | GCGC | 3 cut(s) | 196, 427, 1419 |
| HinP1I | GCGC | 3 cut(s) | 196, 427, 1419 |
| HincII | GTYRAC | 2 cut(s) | 868, 1024 |
| HindII | GTYRAC | 2 cut(s) | 868, 1024 |
| HindIII | AAGCTT | 1 cut(s) | 1475 |
| HpaI | GTTAAC | 1 cut(s) | 868 |
| HpaII | CCGG | 1 cut(s) | 1654 |
| HphI | GGTGA | 5 cut(s) | 164, 395, 445, 517, 1228 |
| Hpy166II | GTNNAC | 5 cut(s) | 868, 1024, 1104, 1401, 1489 |
| Hpy188III | TCNNGA | 7 cut(s) | 719, 775, 953, 1073, 1349, 1654, 1661 |
| Hpy8I | GTNNAC | 5 cut(s) | 868, 1024, 1104, 1401, 1489 |
| HpyAV | CCTTC | 8 cut(s) | 53, 284, 356, 639, 852, 1150, 1309, 1546 |
| HpyCH4III | ACNGT | 7 cut(s) | 504, 862, 872, 912, 1021, 1365, 1381 |
| HpyCH4IV | ACGT | 1 cut(s) | 1435 |
| HpyCH4V | TGCA | 9 cut(s) | 301, 757, 821, 1139, 1358, 1439, 1447, 1569, 1616 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 11, 248, 1283 |
| HpyF3I | CTNAG | 7 cut(s) | 603, 701, 717, 1165, 1245, 1492, 1681 |
| HpySE526I | ACGT | 1 cut(s) | 1435 |
| Hsp92II | CATG | 9 cut(s) | 241, 545, 730, 778, 989, 1231, 1399, 1616, 1646 |
| HspAI | GCGC | 3 cut(s) | 196, 427, 1419 |
| Kpn2I | TCCGGA | 1 cut(s) | 1653 |
| KspAI | GTTAAC | 1 cut(s) | 868 |
| Kzo9I | GATC | 3 cut(s) | 691, 838, 1069 |
| LmnI | GCTCC | 1 cut(s) | 1159 |
| Lsp1109I | GCAGC | 3 cut(s) | 82, 313, 508 |
| LweI | GCATC | 5 cut(s) | 808, 1126, 1320, 1345, 1660 |
| MaeII | ACGT | 1 cut(s) | 1435 |
| MaeIII | GTNAC | 7 cut(s) | 474, 523, 994, 1015, 1144, 1234, 1391 |
| MalI | GATC | 3 cut(s) | 693, 840, 1071 |
| MboI | GATC | 3 cut(s) | 691, 838, 1069 |
| MflI | RGATCY | 1 cut(s) | 1069 |
| MhlI | GDGCHC | 2 cut(s) | 555, 1164 |
| MlyI | GAGTC | 3 cut(s) | 195, 791, 1484 |
| MmeI | TCCRAC | 1 cut(s) | 894 |
| MroI | TCCGGA | 1 cut(s) | 1653 |
| MroXI | GAANNNNTTC | 1 cut(s) | 832 |
| MseI | TTAA | 4 cut(s) | 440, 867, 1634, 1638 |
| MslI | CAYNNNNRTG | 2 cut(s) | 990, 1617 |
| MspI | CCGG | 1 cut(s) | 1654 |
| MspR9I | CCNGG | 1 cut(s) | 1520 |
| Mva1269I | GAATGC | 1 cut(s) | 784 |
| MvaI | CCWGG | 1 cut(s) | 1520 |
| MvnI | CGCG | 2 cut(s) | 198, 429 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 11, 248, 1283 |
| NdeII | GATC | 3 cut(s) | 691, 838, 1069 |
| NlaIII | CATG | 9 cut(s) | 241, 545, 730, 778, 989, 1231, 1399, 1616, 1646 |
| NlaIV | GGNNCC | 9 cut(s) | 82, 175, 222, 313, 406, 714, 1071, 1161, 1483 |
| NmuCI | GTSAC | 4 cut(s) | 474, 523, 994, 1234 |
| NspI | RCATGY | 4 cut(s) | 730, 989, 1399, 1616 |
| PacI | TTAATTAA | 1 cut(s) | 1638 |
| PagI | TCATGA | 1 cut(s) | 774 |
| PasI | CCCWGGG | 1 cut(s) | 1519 |
| PciI | ACATGT | 2 cut(s) | 985, 1395 |
| PctI | GAATGC | 1 cut(s) | 784 |
| PdmI | GAANNNNTTC | 1 cut(s) | 832 |
| PfeI | GAWTC | 8 cut(s) | 31, 268, 889, 1076, 1369, 1510, 1539, 1657 |
| PflFI | GACNNNGTC | 1 cut(s) | 1493 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1648 |
| PkrI | GCNGC | 3 cut(s) | 72, 303, 498 |
| PleI | GAGTC | 3 cut(s) | 195, 791, 1484 |
| PpsI | GAGTC | 3 cut(s) | 195, 791, 1484 |
| Ppu21I | YACGTR | 1 cut(s) | 1436 |
| PscI | ACATGT | 2 cut(s) | 985, 1395 |
| Psp6I | CCWGG | 1 cut(s) | 1518 |
| PspEI | GGTNACC | 1 cut(s) | 523 |
| PspFI | CCCAGC | 1 cut(s) | 1338 |
| PspGI | CCWGG | 1 cut(s) | 1518 |
| PspN4I | GGNNCC | 9 cut(s) | 82, 175, 222, 313, 406, 714, 1071, 1161, 1483 |
| PspPI | GGNCC | 5 cut(s) | 173, 220, 404, 1481, 1651 |
| PstI | CTGCAG | 1 cut(s) | 303 |
| PstNI | CAGNNNCTG | 2 cut(s) | 502, 1379 |
| PsuI | RGATCY | 1 cut(s) | 1069 |
| PsyI | GACNNNGTC | 1 cut(s) | 1493 |
| RseI | CAYNNNNRTG | 2 cut(s) | 990, 1617 |
| SaqAI | TTAA | 4 cut(s) | 440, 867, 1634, 1638 |
| SatI | GCNGC | 3 cut(s) | 71, 302, 497 |
| Sau3AI | GATC | 3 cut(s) | 691, 838, 1069 |
| Sau96I | GGNCC | 5 cut(s) | 173, 220, 404, 1481, 1651 |
| SchI | GAGTC | 3 cut(s) | 195, 791, 1484 |
| ScrFI | CCNGG | 1 cut(s) | 1520 |
| SduI | GDGCHC | 2 cut(s) | 555, 1164 |
| SfaNI | GCATC | 5 cut(s) | 808, 1126, 1320, 1345, 1660 |
| SfcI | CTRYAG | 1 cut(s) | 299 |
| SinI | GGWCC | 4 cut(s) | 173, 404, 1481, 1651 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 990, 1617 |
| SsiI | CCGC | 2 cut(s) | 198, 638 |
| SspI | AATATT | 2 cut(s) | 96, 327 |
| StyD4I | CCNGG | 1 cut(s) | 1518 |
| TaaI | ACNGT | 7 cut(s) | 504, 862, 872, 912, 1021, 1365, 1381 |
| TaiI | ACGT | 1 cut(s) | 1438 |
| TaqI | TCGA | 2 cut(s) | 663, 1170 |
| TfiI | GAWTC | 8 cut(s) | 31, 268, 889, 1076, 1369, 1510, 1539, 1657 |
| Tru1I | TTAA | 4 cut(s) | 440, 867, 1634, 1638 |
| Tru9I | TTAA | 4 cut(s) | 440, 867, 1634, 1638 |
| TscAI | CASTG | 4 cut(s) | 507, 555, 565, 865 |
| TseFI | GTSAC | 4 cut(s) | 474, 523, 994, 1234 |
| TseI | GCWGC | 3 cut(s) | 70, 301, 496 |
| Tsp45I | GTSAC | 4 cut(s) | 474, 523, 994, 1234 |
| TspDTI | ATGAA | 5 cut(s) | 649, 763, 791, 1440, 1595 |
| TspGWI | ACGGA | 2 cut(s) | 935, 1196 |
| TspRI | CASTG | 4 cut(s) | 507, 555, 565, 865 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1493 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1648 |
| VpaK11BI | GGWCC | 4 cut(s) | 173, 404, 1481, 1651 |
| XapI | RAATTY | 6 cut(s) | 120, 351, 828, 895, 1185, 1429 |
| XceI | RCATGY | 4 cut(s) | 730, 989, 1399, 1616 |
| XmiI | GTMKAC | 1 cut(s) | 1103 |
| XmnI | GAANNNNTTC | 1 cut(s) | 832 |