Rmu_ssc0000473.1_g000016

Splicing factor U2AF-associated protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000473.1
Physical Location & Seq
Reverse (-)
98153 .. 104966
6814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000473.1_g000016.1.cds

Sequence Viewer

Length: 1713 bp
atggcgaggttcgcagggaacggctcggagaatctccgagaagaagaagaagaagaagaagggaaacggcagcaatcaggttccgaacagacaatattggagatggaagccaaaaccgaaattttgagtgaagtaggatggtttattctcggtgaaaatcagcaacatcttggtccctacacattttcagagttgcgcggactctctaccacccttttggccccctcccccagtctcatggcgaggttcgcagggaacggctcggagaatctccgagaagaagaagaagaagggaaactgcagcaatcaggttccgaacagacaatattggagatggaagccaaaaccgaaattttgagtgaaggaggatggtttattctcggtgaaaatcagcaacatcttggtccctacacattttcagagttgcgcgagcatttcttaaatggctacctcacccactctacgctggtctggtcacaaggaagaagcgaatggcagccactgtcctcaattcctaatttggtcacccaacttacttgccatgacccagtgccccccagtggtaatgatgatgactttgagaaatggcagaagcagatttctaaggcagaagcagatagtgaaagaccttcaacaccgccagagggcgaggaagagttcatcgatgatgatggcactcaatataagtgggatcggggtcttagggcttgggttcctcaggatagcatgtttggggtagaggagatgactttcttgcaagaagaggaagtcttcatgaatgccaaactttctgacgactcttcaagggaggaggttgatgcaactggaattttttctgatccttctaaagaagaagacactgttgttaactgtgaggtagaacaagggaatccaaattcaaagagaaaactgtcggatacggaagatgtgaaaaaggaagctaataaacctcctgatagttggtttgagctaaaggtcaattcacatgtttatgtgactggattacccgatgatgttacagttgacgaagtggtggaggtgttttccaagtgtgggataataaaagaggatcctgaatcaaaaaagcctcgtgtgaagctgtatactgataaagcgactggaaagaaaaagggagatgcacttgttacatatttgaaggagccctcagtcgatttggctctcaaaattttggatggaacacctctccgtcttggtagcaaggttctcatgtcagtcacccaagctaagtttgagcagaaaggggatagatttattgccaaacaagcagacaacaagaggaaaaaaaaactgaagaaggtggaagagaagatgcttggctggggtggtcgtgatgatgcaaaactgttgattccagctactgttcttcttcgttacatgttcactactgctgaaatgagcgcagatgaaaatttacgtgcagaattgcaggcagatgttgaggaggaatgtcagaagcttggtcccgtggactcagtcaaggtttgtgagaatcatccccagggtgttgttttggtaagattcaaagataggaaggacgctcaaaagtgcatagagttgatgaatggaagatggtttggtggtaggcagatacatgcaagtgaggatgatggtttaattaaccatgctttggtccggaatctggatgatgatgctgaacgcttagagcagtttgcttccgaacttgatgtatga

Protein Analysis

570

Amino Acids

64.29

Weight (kDa)

4.69

Isoelectric Point (pI)

51.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1648
AccI GTMKAC 1 cut(s) 1103
AccII CGCG 2 cut(s) 198, 429
AccIII TCCGGA 1 cut(s) 1653
AciI CCGC 2 cut(s) 198, 638
AclWI GGATC 4 cut(s) 699, 833, 1064, 1077
AcsI RAATTY 6 cut(s) 120, 351, 828, 895, 1185, 1429
AcuI CTGAAG 1 cut(s) 1331
AfiI CCNNNNNNNGG 5 cut(s) 560, 644, 1053, 1648, 1660
AflIII ACRYGT 2 cut(s) 985, 1395
AgsI TTSAA 5 cut(s) 633, 804, 900, 1156, 1543
AjnI CCWGG 1 cut(s) 1518
AluBI AGCT 6 cut(s) 941, 970, 1099, 1244, 1376, 1477
AluI AGCT 6 cut(s) 941, 970, 1099, 1244, 1376, 1477
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 4 cut(s) 699, 833, 1064, 1077
AlwNI CAGNNNCTG 2 cut(s) 502, 1379
Aor13HI TCCGGA 1 cut(s) 1653
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 3 cut(s) 70, 301, 496
ApoI RAATTY 6 cut(s) 120, 351, 828, 895, 1185, 1429
Asp700I GAANNNNTTC 1 cut(s) 832
AspLEI GCGC 3 cut(s) 198, 429, 1421
AspS9I GGNCC 5 cut(s) 173, 220, 404, 1481, 1651
AsuHPI GGTGA 5 cut(s) 164, 395, 445, 517, 1228
AvaII GGWCC 4 cut(s) 173, 404, 1481, 1651
AxyI CCTNAGG 1 cut(s) 717
BaeGI GKGCMC 1 cut(s) 555
BamHI GGATCC 1 cut(s) 1069
BanII GRGCYC 1 cut(s) 1164
BauI CACGAG 1 cut(s) 1089
BbsI GAAGAC 2 cut(s) 763, 861
BbvI GCAGC 3 cut(s) 82, 313, 508
BccI CCATC 8 cut(s) 97, 132, 328, 363, 665, 1187, 1584, 1622
BceAI ACGGC 3 cut(s) 37, 83, 274
BciT130I CCWGG 1 cut(s) 1520
BciVI GTATCC 1 cut(s) 910
BcoDI GTCTC 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 299
BfuI GTATCC 1 cut(s) 910
BisI GCNGC 3 cut(s) 71, 302, 497
BlsI GCNGC 3 cut(s) 72, 303, 498
Bme1390I CCNGG 1 cut(s) 1520
Bme18I GGWCC 4 cut(s) 173, 404, 1481, 1651
BmgT120I GGNCC 5 cut(s) 173, 220, 404, 1481, 1651
BmiI GGNNCC 9 cut(s) 82, 175, 222, 313, 406, 714, 1071, 1161, 1483
BmrFI CCNGG 1 cut(s) 1520
BmrI ACTGGG 3 cut(s) 225, 542, 552
BmsI GCATC 5 cut(s) 808, 1126, 1320, 1345, 1660
BmuI ACTGGG 3 cut(s) 225, 542, 552
BpiI GAAGAC 2 cut(s) 763, 861
Bsa29I ATCGAT 1 cut(s) 663
BsaAI YACGTR 1 cut(s) 1436
BsaJI CCNNGG 3 cut(s) 1485, 1518, 1519
BsaWI WCCGGW 1 cut(s) 1653
Bsc4I CCNNNNNNNGG 5 cut(s) 560, 644, 1053, 1648, 1660
Bse1I ACTGG 6 cut(s) 231, 548, 558, 829, 1003, 1123
Bse21I CCTNAGG 1 cut(s) 717
BseAI TCCGGA 1 cut(s) 1653
BseBI CCWGG 1 cut(s) 1520
BseCI ATCGAT 1 cut(s) 663
BseDI CCNNGG 3 cut(s) 1485, 1518, 1519
BseGI GGATG 6 cut(s) 143, 374, 1198, 1513, 1630, 1669
BseLI CCNNNNNNNGG 5 cut(s) 560, 644, 1053, 1648, 1660
BseMII CTCAG 3 cut(s) 731, 1179, 1506
BseNI ACTGG 6 cut(s) 231, 548, 558, 829, 1003, 1123
BseRI GAGGAG 3 cut(s) 755, 824, 1475
BseSI GKGCMC 1 cut(s) 555
BseXI GCAGC 3 cut(s) 82, 313, 508
BseYI CCCAGC 1 cut(s) 1338
BsgI GTGCAG 1 cut(s) 1458
Bsh1236I CGCG 2 cut(s) 198, 429
BshFI GGCC 1 cut(s) 221
BshVI ATCGAT 1 cut(s) 663
BsiSI CCGG 1 cut(s) 1654
BslFI GGGAC 3 cut(s) 159, 390, 1467
BslI CCNNNNNNNGG 5 cut(s) 560, 644, 1053, 1648, 1660
BsmAI GTCTC 1 cut(s) 239
BsmFI GGGAC 3 cut(s) 159, 390, 1467
BsmI GAATGC 1 cut(s) 784
BsnI GGCC 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 555, 1164
Bsp13I TCCGGA 1 cut(s) 1653
Bsp143I GATC 3 cut(s) 691, 838, 1069
BspACI CCGC 2 cut(s) 198, 638
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 3 cut(s) 730, 1178, 1505
BspDI ATCGAT 1 cut(s) 663
BspEI TCCGGA 1 cut(s) 1653
BspFNI CGCG 2 cut(s) 198, 429
BspHI TCATGA 1 cut(s) 774
BspLI GGNNCC 9 cut(s) 82, 175, 222, 313, 406, 714, 1071, 1161, 1483
BspMAI CTGCAG 1 cut(s) 303
BspPI GGATC 4 cut(s) 699, 833, 1064, 1077
BsrI ACTGG 6 cut(s) 231, 548, 558, 829, 1003, 1123
BssECI CCNNGG 3 cut(s) 1485, 1518, 1519
BssMI GATC 3 cut(s) 691, 838, 1069
BssNAI GTATAC 1 cut(s) 1104
BssSI CACGAG 1 cut(s) 1089
Bst1107I GTATAC 1 cut(s) 1104
Bst2BI CACGAG 1 cut(s) 1089
Bst2UI CCWGG 1 cut(s) 1520
Bst4CI ACNGT 7 cut(s) 504, 862, 872, 912, 1021, 1365, 1381
Bst6I CTCTTC 4 cut(s) 648, 756, 805, 1317
BstBAI YACGTR 1 cut(s) 1436
BstC8I GCNNGC 2 cut(s) 431, 1449
BstDEI CTNAG 7 cut(s) 603, 701, 717, 1165, 1245, 1492, 1681
BstDSI CCRYGG 1 cut(s) 1485
BstEII GGTNACC 1 cut(s) 523
BstF5I GGATG 6 cut(s) 143, 374, 1198, 1513, 1630, 1669
BstFNI CGCG 2 cut(s) 198, 429
BstHHI GCGC 3 cut(s) 198, 429, 1421
BstKTI GATC 3 cut(s) 694, 841, 1072
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 3 cut(s) 691, 838, 1069
BstMWI GCNNNNNNNGC 3 cut(s) 11, 248, 1283
BstNI CCWGG 1 cut(s) 1520
BstNSI RCATGY 4 cut(s) 730, 989, 1399, 1616
BstPI GGTNACC 1 cut(s) 523
BstSCI CCNGG 1 cut(s) 1518
BstSFI CTRYAG 1 cut(s) 299
BstSLI GKGCMC 1 cut(s) 555
BstUI CGCG 2 cut(s) 198, 429
BstV1I GCAGC 3 cut(s) 82, 313, 508
BstV2I GAAGAC 2 cut(s) 763, 861
BstX2I RGATCY 1 cut(s) 1069
BstXI CCANNNNNNTGG 2 cut(s) 217, 238
BstYI RGATCY 1 cut(s) 1069
BstZ17I GTATAC 1 cut(s) 1104
Bsu15I ATCGAT 1 cut(s) 663
Bsu36I CCTNAGG 1 cut(s) 717
BsuI GTATCC 1 cut(s) 910
BsuRI GGCC 1 cut(s) 221
BsuTUI ATCGAT 1 cut(s) 663
BtgI CCRYGG 1 cut(s) 1485
BtsCI GGATG 6 cut(s) 143, 374, 1198, 1513, 1630, 1669
BtsIMutI CAGTG 4 cut(s) 500, 555, 565, 858
Cac8I GCNNGC 2 cut(s) 431, 1449
CaiI CAGNNNCTG 2 cut(s) 502, 1379
CciI TCATGA 1 cut(s) 774
CfoI GCGC 3 cut(s) 198, 429, 1421
Cfr13I GGNCC 5 cut(s) 173, 220, 404, 1481, 1651
ClaI ATCGAT 1 cut(s) 663
CseI GACGC 1 cut(s) 1565
CspCI CAANNNNNGTGG 2 cut(s) 668, 703
CviAII CATG 9 cut(s) 238, 542, 727, 775, 986, 1228, 1396, 1613, 1643
DdeI CTNAG 7 cut(s) 603, 701, 717, 1165, 1245, 1492, 1681
DpnI GATC 3 cut(s) 693, 840, 1071
DpnII GATC 3 cut(s) 691, 838, 1069
Eam1104I CTCTTC 4 cut(s) 648, 756, 805, 1317
EarI CTCTTC 4 cut(s) 648, 756, 805, 1317
Eco24I GRGCYC 1 cut(s) 1164
Eco47I GGWCC 4 cut(s) 173, 404, 1481, 1651
Eco57I CTGAAG 1 cut(s) 1331
Eco81I CCTNAGG 1 cut(s) 717
Eco91I GGTNACC 1 cut(s) 523
EcoO65I GGTNACC 1 cut(s) 523
EcoRII CCWGG 1 cut(s) 1518
EcoT38I GRGCYC 1 cut(s) 1164
FaeI CATG 9 cut(s) 241, 545, 730, 778, 989, 1231, 1399, 1616, 1646
FaqI GGGAC 3 cut(s) 159, 390, 1467
FatI CATG 9 cut(s) 237, 541, 726, 774, 985, 1227, 1395, 1612, 1642
FblI GTMKAC 1 cut(s) 1103
Fnu4HI GCNGC 3 cut(s) 71, 302, 497
FokI GGATG 6 cut(s) 150, 381, 1205, 1500, 1637, 1676
FriOI GRGCYC 1 cut(s) 1164
Fsp4HI GCNGC 3 cut(s) 71, 302, 497
GlaI GCGC 3 cut(s) 197, 428, 1420
GluI GCNGC 3 cut(s) 71, 302, 497
GsaI CCCAGC 1 cut(s) 1342
HaeIII GGCC 1 cut(s) 221
HapII CCGG 1 cut(s) 1654
HgaI GACGC 1 cut(s) 1565
HhaI GCGC 3 cut(s) 198, 429, 1421
Hin1II CATG 9 cut(s) 241, 545, 730, 778, 989, 1231, 1399, 1616, 1646
Hin6I GCGC 3 cut(s) 196, 427, 1419
HinP1I GCGC 3 cut(s) 196, 427, 1419
HincII GTYRAC 2 cut(s) 868, 1024
HindII GTYRAC 2 cut(s) 868, 1024
HindIII AAGCTT 1 cut(s) 1475
HpaI GTTAAC 1 cut(s) 868
HpaII CCGG 1 cut(s) 1654
HphI GGTGA 5 cut(s) 164, 395, 445, 517, 1228
Hpy166II GTNNAC 5 cut(s) 868, 1024, 1104, 1401, 1489
Hpy188III TCNNGA 7 cut(s) 719, 775, 953, 1073, 1349, 1654, 1661
Hpy8I GTNNAC 5 cut(s) 868, 1024, 1104, 1401, 1489
HpyAV CCTTC 8 cut(s) 53, 284, 356, 639, 852, 1150, 1309, 1546
HpyCH4III ACNGT 7 cut(s) 504, 862, 872, 912, 1021, 1365, 1381
HpyCH4IV ACGT 1 cut(s) 1435
HpyCH4V TGCA 9 cut(s) 301, 757, 821, 1139, 1358, 1439, 1447, 1569, 1616
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 248, 1283
HpyF3I CTNAG 7 cut(s) 603, 701, 717, 1165, 1245, 1492, 1681
HpySE526I ACGT 1 cut(s) 1435
Hsp92II CATG 9 cut(s) 241, 545, 730, 778, 989, 1231, 1399, 1616, 1646
HspAI GCGC 3 cut(s) 196, 427, 1419
Kpn2I TCCGGA 1 cut(s) 1653
KspAI GTTAAC 1 cut(s) 868
Kzo9I GATC 3 cut(s) 691, 838, 1069
LmnI GCTCC 1 cut(s) 1159
Lsp1109I GCAGC 3 cut(s) 82, 313, 508
LweI GCATC 5 cut(s) 808, 1126, 1320, 1345, 1660
MaeII ACGT 1 cut(s) 1435
MaeIII GTNAC 7 cut(s) 474, 523, 994, 1015, 1144, 1234, 1391
MalI GATC 3 cut(s) 693, 840, 1071
MboI GATC 3 cut(s) 691, 838, 1069
MflI RGATCY 1 cut(s) 1069
MhlI GDGCHC 2 cut(s) 555, 1164
MlyI GAGTC 3 cut(s) 195, 791, 1484
MmeI TCCRAC 1 cut(s) 894
MroI TCCGGA 1 cut(s) 1653
MroXI GAANNNNTTC 1 cut(s) 832
MseI TTAA 4 cut(s) 440, 867, 1634, 1638
MslI CAYNNNNRTG 2 cut(s) 990, 1617
MspI CCGG 1 cut(s) 1654
MspR9I CCNGG 1 cut(s) 1520
Mva1269I GAATGC 1 cut(s) 784
MvaI CCWGG 1 cut(s) 1520
MvnI CGCG 2 cut(s) 198, 429
MwoI GCNNNNNNNGC 3 cut(s) 11, 248, 1283
NdeII GATC 3 cut(s) 691, 838, 1069
NlaIII CATG 9 cut(s) 241, 545, 730, 778, 989, 1231, 1399, 1616, 1646
NlaIV GGNNCC 9 cut(s) 82, 175, 222, 313, 406, 714, 1071, 1161, 1483
NmuCI GTSAC 4 cut(s) 474, 523, 994, 1234
NspI RCATGY 4 cut(s) 730, 989, 1399, 1616
PacI TTAATTAA 1 cut(s) 1638
PagI TCATGA 1 cut(s) 774
PasI CCCWGGG 1 cut(s) 1519
PciI ACATGT 2 cut(s) 985, 1395
PctI GAATGC 1 cut(s) 784
PdmI GAANNNNTTC 1 cut(s) 832
PfeI GAWTC 8 cut(s) 31, 268, 889, 1076, 1369, 1510, 1539, 1657
PflFI GACNNNGTC 1 cut(s) 1493
PflMI CCANNNNNTGG 1 cut(s) 1648
PkrI GCNGC 3 cut(s) 72, 303, 498
PleI GAGTC 3 cut(s) 195, 791, 1484
PpsI GAGTC 3 cut(s) 195, 791, 1484
Ppu21I YACGTR 1 cut(s) 1436
PscI ACATGT 2 cut(s) 985, 1395
Psp6I CCWGG 1 cut(s) 1518
PspEI GGTNACC 1 cut(s) 523
PspFI CCCAGC 1 cut(s) 1338
PspGI CCWGG 1 cut(s) 1518
PspN4I GGNNCC 9 cut(s) 82, 175, 222, 313, 406, 714, 1071, 1161, 1483
PspPI GGNCC 5 cut(s) 173, 220, 404, 1481, 1651
PstI CTGCAG 1 cut(s) 303
PstNI CAGNNNCTG 2 cut(s) 502, 1379
PsuI RGATCY 1 cut(s) 1069
PsyI GACNNNGTC 1 cut(s) 1493
RseI CAYNNNNRTG 2 cut(s) 990, 1617
SaqAI TTAA 4 cut(s) 440, 867, 1634, 1638
SatI GCNGC 3 cut(s) 71, 302, 497
Sau3AI GATC 3 cut(s) 691, 838, 1069
Sau96I GGNCC 5 cut(s) 173, 220, 404, 1481, 1651
SchI GAGTC 3 cut(s) 195, 791, 1484
ScrFI CCNGG 1 cut(s) 1520
SduI GDGCHC 2 cut(s) 555, 1164
SfaNI GCATC 5 cut(s) 808, 1126, 1320, 1345, 1660
SfcI CTRYAG 1 cut(s) 299
SinI GGWCC 4 cut(s) 173, 404, 1481, 1651
SmiMI CAYNNNNRTG 2 cut(s) 990, 1617
SsiI CCGC 2 cut(s) 198, 638
SspI AATATT 2 cut(s) 96, 327
StyD4I CCNGG 1 cut(s) 1518
TaaI ACNGT 7 cut(s) 504, 862, 872, 912, 1021, 1365, 1381
TaiI ACGT 1 cut(s) 1438
TaqI TCGA 2 cut(s) 663, 1170
TfiI GAWTC 8 cut(s) 31, 268, 889, 1076, 1369, 1510, 1539, 1657
Tru1I TTAA 4 cut(s) 440, 867, 1634, 1638
Tru9I TTAA 4 cut(s) 440, 867, 1634, 1638
TscAI CASTG 4 cut(s) 507, 555, 565, 865
TseFI GTSAC 4 cut(s) 474, 523, 994, 1234
TseI GCWGC 3 cut(s) 70, 301, 496
Tsp45I GTSAC 4 cut(s) 474, 523, 994, 1234
TspDTI ATGAA 5 cut(s) 649, 763, 791, 1440, 1595
TspGWI ACGGA 2 cut(s) 935, 1196
TspRI CASTG 4 cut(s) 507, 555, 565, 865
Tth111I GACNNNGTC 1 cut(s) 1493
Van91I CCANNNNNTGG 1 cut(s) 1648
VpaK11BI GGWCC 4 cut(s) 173, 404, 1481, 1651
XapI RAATTY 6 cut(s) 120, 351, 828, 895, 1185, 1429
XceI RCATGY 4 cut(s) 730, 989, 1399, 1616
XmiI GTMKAC 1 cut(s) 1103
XmnI GAANNNNTTC 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.