Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010500

Physical Location & Seq

Genomic Coordinates Forward (+)

72018458 .. 72019374

Gene Structure 917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0601100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAGAAGAGAAGAGAGTTGAGTGGGAGATCAGTAACGAAGCAAAGAGAGCTTCTTCAAGTTCAAGACTACGTCATGCACATGGTTTTGCTCACCGCCGGAGCATCTGTGTCGGTTTTGATGGTGTTTCTCATGGAGCAGTGGCGGGCGTGGGTGTTCATCGTTCTCAACCTCGTCCTCTTAGCCATTCTTTTCACTTCAGTCTCGTCCACCTCAGATGAAAATCAAGAACGCAAAAACAGCAACGACGAGGCAGATCGAGTTCCGGTCAAAGTTGAAATGAAGAAGGAGATGAGGCAATGTAGGTGGCCACCGACGCAAGTTGATCAAGAAGAGGTTAAAGAATGTGATGAGGAAGAGTGGTTCGAAGTTGAAGACAAGCCGGAGGAGGAGGAGGTTCCGAAGCTGTCAAAGGAGGCTCTGAATGAGAGAGTGGAAGCTTTCATTGTTATGTTCCGGCAGCATTTGGTTTCAGATGCAAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339 RRM_1

Protein Analysis

162

Amino Acids

19.1

Weight (kDa)

4.84

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16260
fragaria_vesca	FvH4_6g00060
malus_domestica	MD00G1017100.v1.1 MD12G1261400.v1.1
prunus_persica	Prupe.6G365400_v2.0.a1 Prupe.6G365400_v2.0.a1 Prupe.6G365400_v2.0.a1
pyrus_communis	pycom02g06260 pycom04g22010 pycom04g22020 pycom12g24240
rosa_chinensis	RchiOBHm_Chr3g0447391
rosa_laevigata	RLG00000026003
rosa_multiflora	Rmu_ssc0000473.1_g000016
rosa_roxburghii	Rroxscaffold_6G00425590
rosa_rugosa	Rorug02G0601100
rosa_samantha	Rh3AG001200 Rh3BG000900 Rh3CG000900 Rh3DG001100
rosa_wichuraiana	Rw3G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	96, 145
AcoI	YGGCCR	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	183
AgsI	TTSAA	4 cut(s)	59, 65, 278, 374
AloI	GAACNNNNNNTCC	2 cut(s)	347, 379
AluBI	AGCT	3 cut(s)	52, 406, 440
AluI	AGCT	3 cut(s)	52, 406, 440
Alw26I	GTCTC	1 cut(s)	208
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	1 cut(s)	460
AsuHPI	GGTGA	1 cut(s)	85
AsuII	TTCGAA	1 cut(s)	366
BalI	TGGCCA	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	472
BccI	CCATC	1 cut(s)	115
BcgI	CGANNNNNNTGC	2 cut(s)	93, 127
BclI	TGATCA	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	208
BisI	GCNGC	1 cut(s)	461
BlsI	GCNGC	1 cut(s)	462
BmiI	GGNNCC	1 cut(s)	399
BmsI	GCATC	2 cut(s)	113, 466
BpiI	GAAGAC	1 cut(s)	381
Bpu14I	TTCGAA	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	265
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bse3DI	GCAATG	1 cut(s)	305
Bse8I	GATNNNNATC	1 cut(s)	222
BseJI	GATNNNNATC	1 cut(s)	222
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	228
BseRI	GAGGAG	3 cut(s)	401, 404, 407
BseXI	GCAGC	1 cut(s)	472
BshFI	GGCC	1 cut(s)	310
BsiSI	CCGG	4 cut(s)	99, 266, 383, 457
BsmAI	GTCTC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	310
Bsp119I	TTCGAA	1 cut(s)	366
Bsp143I	GATC	3 cut(s)	29, 256, 325
BspACI	CCGC	2 cut(s)	96, 145
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	399
BspT104I	TTCGAA	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	305
BssMI	GATC	3 cut(s)	29, 256, 325
Bst6I	CTCTTC	4 cut(s)	2, 7, 327, 351
BstBI	TTCGAA	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	181, 214
BstKTI	GATC	3 cut(s)	32, 259, 328
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	3 cut(s)	29, 256, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 240, 316
BstV1I	GCAGC	1 cut(s)	472
BstV2I	GAAGAC	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	310
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	147
CseI	GACGC	1 cut(s)	325
CspCI	CAANNNNNGTGG	2 cut(s)	287, 322
CviAII	CATG	3 cut(s)	76, 82, 133
CviJI	RGCY	7 cut(s)	52, 185, 310, 382, 406, 419, 440
CviKI_1	RGCY	7 cut(s)	52, 185, 310, 382, 406, 419, 440
DdeI	CTNAG	2 cut(s)	181, 214
DpnI	GATC	3 cut(s)	31, 258, 327
DpnII	GATC	3 cut(s)	29, 256, 325
EaeI	YGGCCR	1 cut(s)	308
Eam1104I	CTCTTC	4 cut(s)	2, 7, 327, 351
EarI	CTCTTC	4 cut(s)	2, 7, 327, 351
Eco57I	CTGAAG	1 cut(s)	183
FaeI	CATG	3 cut(s)	79, 85, 136
FaiI	YATR	4 cut(s)	77, 83, 134, 452
FatI	CATG	3 cut(s)	75, 81, 132
FauI	CCCGC	1 cut(s)	138
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	461
Fsp4HI	GCNGC	1 cut(s)	461
GluI	GCNGC	1 cut(s)	461
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	4 cut(s)	99, 266, 383, 457
HgaI	GACGC	1 cut(s)	325
Hin1II	CATG	3 cut(s)	79, 85, 136
HindIII	AAGCTT	1 cut(s)	438
HpaII	CCGG	4 cut(s)	99, 266, 383, 457
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	4 cut(s)	217, 402, 423, 475
Hpy188III	TCNNGA	3 cut(s)	65, 227, 329
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	2 cut(s)	251, 319
HpyAV	CCTTC	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	2 cut(s)	79, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 240, 316
HpyF3I	CTNAG	2 cut(s)	181, 214
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	79, 85, 136
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	29, 256, 325
LmnI	GCTCC	2 cut(s)	101, 136
LpnPI	CCDG	4 cut(s)	112, 279, 396, 470
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	2 cut(s)	113, 466
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	3 cut(s)	31, 258, 327
MboI	GATC	3 cut(s)	29, 256, 325
MboII	GAAGA	7 cut(s)	19, 24, 47, 295, 344, 368, 386
MlsI	TGGCCA	1 cut(s)	310
MluCI	AATT	1 cut(s)	484
MluNI	TGGCCA	1 cut(s)	310
Mox20I	TGGCCA	1 cut(s)	310
MscI	TGGCCA	1 cut(s)	310
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	2 cut(s)	80, 449
Msp20I	TGGCCA	1 cut(s)	310
MspI	CCGG	4 cut(s)	99, 266, 383, 457
MwoI	GCNNNNNNNGC	3 cut(s)	49, 240, 316
NdeII	GATC	3 cut(s)	29, 256, 325
NlaIII	CATG	3 cut(s)	79, 85, 136
NlaIV	GGNNCC	1 cut(s)	399
NspV	TTCGAA	1 cut(s)	366
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	462
PspN4I	GGNNCC	1 cut(s)	399
PsyI	GACNNNGTC	1 cut(s)	71
RseI	CAYNNNNRTG	2 cut(s)	80, 449
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	1 cut(s)	461
Sau3AI	GATC	3 cut(s)	29, 256, 325
SetI	ASST	9 cut(s)	54, 75, 174, 215, 308, 339, 399, 408, 442
SfaNI	GCATC	2 cut(s)	113, 466
SfuI	TTCGAA	1 cut(s)	366
SmiMI	CAYNNNNRTG	2 cut(s)	80, 449
Sse9I	AATT	1 cut(s)	484
SsiI	CCGC	2 cut(s)	96, 145
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	2 cut(s)	259, 366
TasI	AATT	1 cut(s)	484
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	146
TseI	GCWGC	1 cut(s)	460
TspDTI	ATGAA	4 cut(s)	148, 234, 296, 433
TspRI	CASTG	1 cut(s)	146
Tth111I	GACNNNGTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.