Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010500

Physical Location & Seq

Genomic Coordinates Forward (+)

49774450 .. 49780904

Gene Structure 6455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026003

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGAGTAGTCCTGACCCAATTAAAGTAGCCCAACTCAACTCAAACAAGAGGAAGGAGGAAGCCCACCCAACCCAAATTACAAAATATATCTTGCAAAACGAACCCTTTGACCACCCCTCCCCCAGTCTCATGGCGAGGTTCGCAGGGAACGGCTCGGAGAATCTCCGAGAAGAAGAAAAAGAAGAAGAAGAGAAACCGCAACAATCAGGTTCCGAACAGACAATATTGGAGATGGAAGCCAAAACCGAAATTTTGAGTGAAGTAGGATGGTTTATTCTCGGTGAAAATCAGCAACATCTTGGTCCCTACGCATTTTCAGAGTTGCGCGAGCATTTCTTAAATGGCTACCTCACCCACTCTACGCTGGTCTGGTCACAAGGAAGAAGCGAATGGCAGCCACTGTCCTCAATTCCTAATTTGGTCAACCAACTTGCTTGCCATGACCCAGTGCCCCCCAGTGGTAATGATGATGACTTTGAGAAATGGCAGAAGCAGATTTCTAAGGCAGAAGCAGATAGTGAAAGACCTTCAACACCGCCAGAGGGCGAGGAAGAATTCATCGATGATGATGGGACTCAATACAAGTGGGATCGGGGTCTTAGGGCTTGGGTTCCTCAGGATAGCATGTTTGGGGTAGAGGAGATGACTTTCTTGCAAGAAGAGGAAGTCTTCATGAATGCCAAACCTTCTGATGACTCTTCAAGGGAGGAGGTTCATGCAACTGGAATTTTTTCTGATCCTTCTAAAGAAGAAGACACTGTTGTTAACTGTGAGGTGGAACAAGGGAATCCAAATTCAAAGAGAAAATTGTCGGATACGGAAGATATGAAAAAGGAAGCTAATAAACCTCCTGATAGTTGGTTTGAGCTAAAGGTCAATTCACATGTTTATGTGACTGGATTACCCGATGATGTTACAGTTGACGAAGTGGTGGAGGTGTTTTCCAAGTGTGGGATAATAAAAGAGGATCCTGAATCAAAAAAGCCTCGTGTGAAGCTGTATACTGATAAAGCGACCGGAAAGAAAAAGGGAGATGCACTTGTTACATATTTGAAGGAGCCCTCAGTTGATTTGGCTCTCAAAATTTTGGATGGAACACCTCTGCGTCTTGGTAGCAAGGTTCTCATGTCAGTCACCCAAGCTAAGTTTGAGCAGAAAGGGGATAGATTTATTGCCAAACAAGCAGACAACAAGAGGAAAAAAAAACTGAAGAAGGTGGAAGAGAAGATGCTTGGCTGGGGTGGTCGTGATGATGCAAAACTGTTGATTCCAGCTACTGTTCTTCTTCGTTACATGTTCACTACTGCTGAAATGAGGGCAGATGAAAATTTACGTGCAGAATTGCAGGCAGATGTTGAGGAGGAATGTCAGAAGCTTGGTCCCGTGGACTCAGTCAAGGTTTGTGAGAATCATCCCCAGGGTGTTGTTTTGGTAAGATTCAAAGATAGGAAGGATGCTCAAAAGTGCATAGAGTTGATGAATGGAAGATGGTTTGGTGGTAGGCAGATACATGCAAGTGAGGATGATGGTTTAATTAACCATGCTTTGGTCCGGAATCTGGATGATGATGCTGAACGCTTAGAGCAGTTTGCTTCCGAACTTGATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339 RRM_1

Protein Analysis

537

Amino Acids

60.78

Weight (kDa)

4.88

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GYF_2	PF14237	90 - 140	1e-15	GYF domain 2
RRM_1	PF00076	296 - 368	2.5e-07	RNA recognition motif
RRM_1	PF00076	450 - 504	3.9e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16260
fragaria_vesca	FvH4_6g00060
malus_domestica	MD00G1017100.v1.1 MD12G1261400.v1.1
prunus_persica	Prupe.6G365400_v2.0.a1 Prupe.6G365400_v2.0.a1 Prupe.6G365400_v2.0.a1
pyrus_communis	pycom02g06260 pycom04g22010 pycom04g22020 pycom12g24240
rosa_chinensis	RchiOBHm_Chr3g0447391
rosa_laevigata	RLG00000026003
rosa_multiflora	Rmu_ssc0000473.1_g000016
rosa_roxburghii	Rroxscaffold_6G00425590
rosa_rugosa	Rorug02G0601100
rosa_samantha	Rh3AG001200 Rh3BG000900 Rh3CG000900 Rh3DG001100
rosa_wichuraiana	Rw3G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1546
AccI	GTMKAC	1 cut(s)	1001
AccII	CGCG	1 cut(s)	327
AccIII	TCCGGA	1 cut(s)	1551
AciI	CCGC	2 cut(s)	197, 536
AclWI	GGATC	4 cut(s)	597, 731, 962, 975
AcsI	RAATTY	6 cut(s)	249, 554, 726, 793, 1083, 1327
AcuI	CTGAAG	1 cut(s)	1229
AfiI	CCNNNNNNNGG	5 cut(s)	458, 542, 951, 1546, 1558
AflIII	ACRYGT	2 cut(s)	883, 1293
AgsI	TTSAA	5 cut(s)	531, 702, 798, 1054, 1441
AjnI	CCWGG	1 cut(s)	1416
AluBI	AGCT	6 cut(s)	839, 868, 997, 1142, 1274, 1375
AluI	AGCT	6 cut(s)	839, 868, 997, 1142, 1274, 1375
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	4 cut(s)	597, 731, 962, 975
AlwNI	CAGNNNCTG	2 cut(s)	400, 1277
Aor13HI	TCCGGA	1 cut(s)	1551
ApeKI	GCWGC	1 cut(s)	394
ApoI	RAATTY	6 cut(s)	249, 554, 726, 793, 1083, 1327
Asp700I	GAANNNNTTC	1 cut(s)	730
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	3 cut(s)	302, 1379, 1549
AsuHPI	GGTGA	3 cut(s)	293, 343, 1126
AvaII	GGWCC	3 cut(s)	302, 1379, 1549
AxyI	CCTNAGG	1 cut(s)	615
BaeGI	GKGCMC	1 cut(s)	453
BamHI	GGATCC	1 cut(s)	967
BanII	GRGCYC	1 cut(s)	1062
BauI	CACGAG	1 cut(s)	987
BbsI	GAAGAC	2 cut(s)	661, 759
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	6 cut(s)	226, 261, 563, 1085, 1482, 1520
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	1418
BciVI	GTATCC	1 cut(s)	808
BcoDI	GTCTC	1 cut(s)	131
BfuI	GTATCC	1 cut(s)	808
BisI	GCNGC	1 cut(s)	395
BlsI	GCNGC	1 cut(s)	396
Bme1390I	CCNGG	1 cut(s)	1418
Bme18I	GGWCC	3 cut(s)	302, 1379, 1549
BmgT120I	GGNCC	3 cut(s)	302, 1379, 1549
BmiI	GGNNCC	6 cut(s)	211, 304, 612, 969, 1059, 1381
BmrFI	CCNGG	1 cut(s)	1418
BmrI	ACTGGG	3 cut(s)	117, 440, 450
BmsI	GCATC	5 cut(s)	1024, 1218, 1243, 1444, 1558
BmuI	ACTGGG	3 cut(s)	117, 440, 450
BpiI	GAAGAC	2 cut(s)	661, 759
Bsa29I	ATCGAT	1 cut(s)	561
BsaAI	YACGTR	1 cut(s)	1334
BsaJI	CCNNGG	3 cut(s)	1383, 1416, 1417
BsaWI	WCCGGW	2 cut(s)	1016, 1551
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	5 cut(s)	458, 542, 951, 1546, 1558
Bse1I	ACTGG	5 cut(s)	123, 446, 456, 727, 901
Bse21I	CCTNAGG	1 cut(s)	615
BseAI	TCCGGA	1 cut(s)	1551
BseBI	CCWGG	1 cut(s)	1418
BseCI	ATCGAT	1 cut(s)	561
BseDI	CCNNGG	3 cut(s)	1383, 1416, 1417
BseGI	GGATG	6 cut(s)	272, 1096, 1411, 1459, 1528, 1567
BseLI	CCNNNNNNNGG	5 cut(s)	458, 542, 951, 1546, 1558
BseMII	CTCAG	3 cut(s)	629, 1077, 1404
BseNI	ACTGG	5 cut(s)	123, 446, 456, 727, 901
BseRI	GAGGAG	3 cut(s)	653, 722, 1373
BseSI	GKGCMC	1 cut(s)	453
BseXI	GCAGC	1 cut(s)	406
BseYI	CCCAGC	1 cut(s)	1236
BsgI	GTGCAG	1 cut(s)	1356
Bsh1236I	CGCG	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	1017
BshVI	ATCGAT	1 cut(s)	561
BsiEI	CGRYCG	1 cut(s)	1017
BsiSI	CCGG	2 cut(s)	1017, 1552
BslFI	GGGAC	3 cut(s)	288, 586, 1365
BslI	CCNNNNNNNGG	5 cut(s)	458, 542, 951, 1546, 1558
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	3 cut(s)	288, 586, 1365
BsmI	GAATGC	1 cut(s)	682
Bsp1286I	GDGCHC	2 cut(s)	453, 1062
Bsp13I	TCCGGA	1 cut(s)	1551
Bsp143I	GATC	3 cut(s)	589, 736, 967
BspACI	CCGC	2 cut(s)	197, 536
BspCNI	CTCAG	3 cut(s)	628, 1076, 1403
BspDI	ATCGAT	1 cut(s)	561
BspEI	TCCGGA	1 cut(s)	1551
BspFNI	CGCG	1 cut(s)	327
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	6 cut(s)	211, 304, 612, 969, 1059, 1381
BspPI	GGATC	4 cut(s)	597, 731, 962, 975
BsrI	ACTGG	5 cut(s)	123, 446, 456, 727, 901
BssECI	CCNNGG	3 cut(s)	1383, 1416, 1417
BssMI	GATC	3 cut(s)	589, 736, 967
BssNAI	GTATAC	1 cut(s)	1002
BssSI	CACGAG	1 cut(s)	987
Bst1107I	GTATAC	1 cut(s)	1002
Bst2BI	CACGAG	1 cut(s)	987
Bst2UI	CCWGG	1 cut(s)	1418
Bst4CI	ACNGT	6 cut(s)	402, 760, 770, 919, 1263, 1279
Bst6I	CTCTTC	4 cut(s)	183, 654, 703, 1215
BstBAI	YACGTR	1 cut(s)	1334
BstC8I	GCNNGC	3 cut(s)	329, 436, 1347
BstDEI	CTNAG	7 cut(s)	501, 599, 615, 1063, 1143, 1390, 1579
BstDSI	CCRYGG	1 cut(s)	1383
BstF5I	GGATG	6 cut(s)	272, 1096, 1411, 1459, 1528, 1567
BstFNI	CGCG	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	3 cut(s)	592, 739, 970
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	3 cut(s)	589, 736, 967
BstMCI	CGRYCG	1 cut(s)	1017
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 1181
BstNI	CCWGG	1 cut(s)	1418
BstNSI	RCATGY	4 cut(s)	628, 887, 1297, 1514
BstSCI	CCNGG	1 cut(s)	1416
BstSLI	GKGCMC	1 cut(s)	453
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	406
BstV2I	GAAGAC	2 cut(s)	661, 759
BstX2I	RGATCY	1 cut(s)	967
BstXI	CCANNNNNNTGG	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	967
BstZ17I	GTATAC	1 cut(s)	1002
Bsu15I	ATCGAT	1 cut(s)	561
Bsu36I	CCTNAGG	1 cut(s)	615
BsuI	GTATCC	1 cut(s)	808
BsuTUI	ATCGAT	1 cut(s)	561
BtgI	CCRYGG	1 cut(s)	1383
BtsCI	GGATG	6 cut(s)	272, 1096, 1411, 1459, 1528, 1567
BtsIMutI	CAGTG	4 cut(s)	398, 453, 463, 756
Cac8I	GCNNGC	3 cut(s)	329, 436, 1347
CaiI	CAGNNNCTG	2 cut(s)	400, 1277
CciI	TCATGA	1 cut(s)	672
CfoI	GCGC	1 cut(s)	327
Cfr13I	GGNCC	3 cut(s)	302, 1379, 1549
ClaI	ATCGAT	1 cut(s)	561
CseI	GACGC	1 cut(s)	1094
CspCI	CAANNNNNGTGG	2 cut(s)	566, 601
DdeI	CTNAG	7 cut(s)	501, 599, 615, 1063, 1143, 1390, 1579
DpnI	GATC	3 cut(s)	591, 738, 969
DpnII	GATC	3 cut(s)	589, 736, 967
Eam1104I	CTCTTC	4 cut(s)	183, 654, 703, 1215
EarI	CTCTTC	4 cut(s)	183, 654, 703, 1215
Eco24I	GRGCYC	1 cut(s)	1062
Eco47I	GGWCC	3 cut(s)	302, 1379, 1549
Eco57I	CTGAAG	1 cut(s)	1229
Eco81I	CCTNAGG	1 cut(s)	615
EcoRI	GAATTC	1 cut(s)	554
EcoRII	CCWGG	1 cut(s)	1416
EcoT38I	GRGCYC	1 cut(s)	1062
FaqI	GGGAC	3 cut(s)	288, 586, 1365
FblI	GTMKAC	1 cut(s)	1001
Fnu4HI	GCNGC	1 cut(s)	395
FokI	GGATG	6 cut(s)	279, 1103, 1398, 1466, 1535, 1574
FriOI	GRGCYC	1 cut(s)	1062
Fsp4HI	GCNGC	1 cut(s)	395
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	1 cut(s)	395
GsaI	CCCAGC	1 cut(s)	1240
HapII	CCGG	2 cut(s)	1017, 1552
HgaI	GACGC	1 cut(s)	1094
HhaI	GCGC	1 cut(s)	327
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HincII	GTYRAC	3 cut(s)	424, 766, 922
HindII	GTYRAC	3 cut(s)	424, 766, 922
HindIII	AAGCTT	1 cut(s)	1373
HpaI	GTTAAC	1 cut(s)	766
HpaII	CCGG	2 cut(s)	1017, 1552
HphI	GGTGA	3 cut(s)	293, 343, 1126
Hpy166II	GTNNAC	6 cut(s)	424, 766, 922, 1002, 1299, 1387
Hpy188I	TCNGA	9 cut(s)	157, 167, 214, 319, 691, 736, 814, 1371, 1597
Hpy188III	TCNNGA	8 cut(s)	11, 617, 673, 851, 971, 1247, 1552, 1559
Hpy8I	GTNNAC	6 cut(s)	424, 766, 922, 1002, 1299, 1387
HpyAV	CCTTC	7 cut(s)	46, 537, 696, 750, 1048, 1207, 1444
HpyCH4III	ACNGT	6 cut(s)	402, 760, 770, 919, 1263, 1279
HpyCH4IV	ACGT	1 cut(s)	1333
HpyCH4V	TGCA	9 cut(s)	94, 655, 719, 1037, 1256, 1337, 1345, 1467, 1514
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 1181
HpyF3I	CTNAG	7 cut(s)	501, 599, 615, 1063, 1143, 1390, 1579
HpySE526I	ACGT	1 cut(s)	1333
HspAI	GCGC	1 cut(s)	325
Kpn2I	TCCGGA	1 cut(s)	1551
KspAI	GTTAAC	1 cut(s)	766
Kzo9I	GATC	3 cut(s)	589, 736, 967
LmnI	GCTCC	1 cut(s)	1057
Lsp1109I	GCAGC	1 cut(s)	406
LweI	GCATC	5 cut(s)	1024, 1218, 1243, 1444, 1558
MaeII	ACGT	1 cut(s)	1333
MaeIII	GTNAC	6 cut(s)	372, 892, 913, 1042, 1132, 1289
MalI	GATC	3 cut(s)	591, 738, 969
MboI	GATC	3 cut(s)	589, 736, 967
MflI	RGATCY	1 cut(s)	967
MhlI	GDGCHC	2 cut(s)	453, 1062
MlyI	GAGTC	3 cut(s)	568, 689, 1382
MmeI	TCCRAC	1 cut(s)	792
MroI	TCCGGA	1 cut(s)	1551
MroXI	GAANNNNTTC	1 cut(s)	730
MseI	TTAA	5 cut(s)	21, 338, 765, 1532, 1536
MslI	CAYNNNNRTG	2 cut(s)	888, 1515
MspI	CCGG	2 cut(s)	1017, 1552
MspR9I	CCNGG	1 cut(s)	1418
Mva1269I	GAATGC	1 cut(s)	682
MvaI	CCWGG	1 cut(s)	1418
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	140, 1181
NdeII	GATC	3 cut(s)	589, 736, 967
NlaIV	GGNNCC	6 cut(s)	211, 304, 612, 969, 1059, 1381
NmuCI	GTSAC	3 cut(s)	372, 892, 1132
NspI	RCATGY	4 cut(s)	628, 887, 1297, 1514
PacI	TTAATTAA	1 cut(s)	1536
PagI	TCATGA	1 cut(s)	672
PasI	CCCWGGG	1 cut(s)	1417
PciI	ACATGT	2 cut(s)	883, 1293
PctI	GAATGC	1 cut(s)	682
PdmI	GAANNNNTTC	1 cut(s)	730
PfeI	GAWTC	7 cut(s)	160, 787, 974, 1267, 1408, 1437, 1555
PflFI	GACNNNGTC	1 cut(s)	1391
PflMI	CCANNNNNTGG	1 cut(s)	1546
PkrI	GCNGC	1 cut(s)	396
PleI	GAGTC	3 cut(s)	568, 689, 1382
PpsI	GAGTC	3 cut(s)	568, 689, 1382
Ppu21I	YACGTR	1 cut(s)	1334
PscI	ACATGT	2 cut(s)	883, 1293
Psp6I	CCWGG	1 cut(s)	1416
PspFI	CCCAGC	1 cut(s)	1236
PspGI	CCWGG	1 cut(s)	1416
PspN4I	GGNNCC	6 cut(s)	211, 304, 612, 969, 1059, 1381
PspPI	GGNCC	3 cut(s)	302, 1379, 1549
PstNI	CAGNNNCTG	2 cut(s)	400, 1277
PsuI	RGATCY	1 cut(s)	967
PsyI	GACNNNGTC	1 cut(s)	1391
RseI	CAYNNNNRTG	2 cut(s)	888, 1515
SaqAI	TTAA	5 cut(s)	21, 338, 765, 1532, 1536
SatI	GCNGC	1 cut(s)	395
Sau3AI	GATC	3 cut(s)	589, 736, 967
Sau96I	GGNCC	3 cut(s)	302, 1379, 1549
SchI	GAGTC	3 cut(s)	568, 689, 1382
ScrFI	CCNGG	1 cut(s)	1418
SduI	GDGCHC	2 cut(s)	453, 1062
SfaNI	GCATC	5 cut(s)	1024, 1218, 1243, 1444, 1558
SinI	GGWCC	3 cut(s)	302, 1379, 1549
SmiMI	CAYNNNNRTG	2 cut(s)	888, 1515
SsiI	CCGC	2 cut(s)	197, 536
SspI	AATATT	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	1416
TaaI	ACNGT	6 cut(s)	402, 760, 770, 919, 1263, 1279
TaiI	ACGT	1 cut(s)	1336
TaqI	TCGA	1 cut(s)	561
TfiI	GAWTC	7 cut(s)	160, 787, 974, 1267, 1408, 1437, 1555
Tru1I	TTAA	5 cut(s)	21, 338, 765, 1532, 1536
Tru9I	TTAA	5 cut(s)	21, 338, 765, 1532, 1536
TscAI	CASTG	4 cut(s)	405, 453, 463, 763
TseFI	GTSAC	3 cut(s)	372, 892, 1132
TseI	GCWGC	1 cut(s)	394
Tsp45I	GTSAC	3 cut(s)	372, 892, 1132
TspDTI	ATGAA	7 cut(s)	547, 661, 689, 704, 842, 1338, 1493
TspGWI	ACGGA	1 cut(s)	833
TspRI	CASTG	4 cut(s)	405, 453, 463, 763
Tth111I	GACNNNGTC	1 cut(s)	1391
Van91I	CCANNNNNTGG	1 cut(s)	1546
VpaK11BI	GGWCC	3 cut(s)	302, 1379, 1549
XapI	RAATTY	6 cut(s)	249, 554, 726, 793, 1083, 1327
XceI	RCATGY	4 cut(s)	628, 887, 1297, 1514
XmiI	GTMKAC	1 cut(s)	1001
XmnI	GAANNNNTTC	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.