Prupe.6G365400_v2.0.a1

Splicing factor U2AF-associated protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
30661400 .. 30667837
6438 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G365400.3

Sequence Viewer

Length: 1512 bp
ATGTCGTTGCAGAACGGCTCGGAGAATCATCACCCTCACCCAGAAGAAGAAAAAGAGAAAGAAGAGCAACGGCAGCAGCAATCGGGCTCGGAACAGAAAAGTTTGGGGATGGAAGGGCAGCCTGAAACGTTGAGTGAAGTAGGATGGTTCATTCTTGGTGAAAATCAACAACATGTTGGTCCATACGCATTTTCAGAGTTGCGTGAGCATTTCTTAAATGGGTACCTCACCCACACTACACTTGTCTGGGCCCAAGGAAGAAGCGCATGGCAGTCACTGTCCTCAATTCCCGGTTTGATCACAGGAATATCTCGCCATGACCAAGAACCTCAGTTTTCAAACACAGTGCCCCCTACTGATGATGACGACGACTTTGAGAAATGGCAGAAGCAGCTTGGTGAAGCAGAAGCAGATAGTGACAGACCTTTGACGCCACCAGAGGGTGAGGAAGAATTCACTGATGACGATGGGACTAAATACAAGTGGGATCGTGGTCTTAGGGCTTGGGTTCCTCAGGATAGCACGTTTGGGGTAGAAGAGATGACTTTCTTGCAAGAAGAGGAAGTTTTTCCAGCTGTCAATTTTTCTGAGGTCTCTGTAGGGGAAGAGGTTAATGCACCTGGAAACGCTTTTGGTCCCACTAAAGGGGAAGATGCTAATGGTAGCAGTGAGGTAGAAGAAGGAGATCAAAGTTCTAAGAGAAAATTGTCAGATAAGGAAGCTAACAAGAAGGAAGCTAATAAACCTCCTGATAGTTGGTTTGAGTTAAAGGTTAATACACATGTTTATGTGACTGGATTGCCGGATGATGTAACGGTTGACGAAGTGGTGGAGGTGTTTACCAAGTGTGGAATTATAAAGGAGGATCCTGAAACAAAAAAGCCACGTGTGAAGCTGTATGTTGACAAAGAGACCGGAAAGAAAAAGGGAGATGCACTTGTTACATATCTGAAGGAACCGTCAGTTGTTTTGGCTACCCAAATTTTGGATGGAACACCTCTACGTCCTGGTGGCAAGATTCTTATGTCGGTCACCCAAGCTAAGTTTCAGCAGAAAGGGGATAAATTTGTTGCCAAACAAGCAGACAACAAGAGGAAAAAGAAACTGAAGAAGGTGGAAGAGAAGATGCTTGGCTGGGGTGGCCGTGATGATGCAAAGGTGTCAATTGCCACTACTGTTATTCTTCGTTACATGTTCACTCCTGCTGAAATGAGGGCAGATGAAAATTTATGTTCGGAATTAAAGGCAGATGTTGAGGAGGAATGTCTGAAGCTTGGTCCAGTGGACTCGGTGAAGGTTTGCGAGAATCATCCCCAGGGAGTTGTTTTGGTCAGATTTAAGGATAGGAATGATGCTCAAAAGTGCATACAGTTGATGAATGGAAGATGGTTTGGCGGTAGGCAGATACATGCAAGTGAGGATGATGGTTTAATTAACCATGCTTTGGTCCGTAATCTGGATGACGATACTGCACGGCTAGAGCAGTTTGGCACTGAACTTGAAGCTGAATGA

Protein Analysis

504

Amino Acids

56.45

Weight (kDa)

4.85

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 857
Acc65I GGTACC 1 cut(s) 222
AccB1I GGYRCC 1 cut(s) 222
AccB7I CCANNNNNTGG 2 cut(s) 985, 1444
AciI CCGC 1 cut(s) 1395
AclI AACGTT 1 cut(s) 128
AclWI GGATC 3 cut(s) 495, 860, 873
AcoI YGGCCR 1 cut(s) 1141
AcsI RAATTY 4 cut(s) 452, 981, 1064, 1225
AcuI CTGAAG 3 cut(s) 971, 1127, 1289
AcvI CACGTG 1 cut(s) 887
AcyI GRCGYC 1 cut(s) 431
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 6 cut(s) 440, 644, 645, 985, 1444, 1456
AflIII ACRYGT 4 cut(s) 172, 781, 886, 1191
AgsI TTSAA 2 cut(s) 339, 1502
AjnI CCWGG 3 cut(s) 619, 1006, 1314
AjuI GAANNNNNNNTTGG 2 cut(s) 1029, 1061
AluBI AGCT 8 cut(s) 394, 575, 722, 737, 895, 1040, 1273, 1505
AluI AGCT 8 cut(s) 394, 575, 722, 737, 895, 1040, 1273, 1505
Alw26I GTCTC 2 cut(s) 598, 905
AlwI GGATC 3 cut(s) 495, 860, 873
AlwNI CAGNNNCTG 1 cut(s) 277
AoxI GGCC 2 cut(s) 249, 1141
ApaI GGGCCC 1 cut(s) 253
ApeKI GCWGC 4 cut(s) 73, 76, 118, 391
ApoI RAATTY 4 cut(s) 452, 981, 1064, 1225
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
Asp700I GAANNNNTTC 1 cut(s) 567
Asp718I GGTACC 1 cut(s) 222
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 6 cut(s) 179, 249, 250, 635, 1277, 1447
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 8 cut(s) 23, 29, 170, 220, 410, 455, 1024, 1303
AvaII GGWCC 4 cut(s) 179, 635, 1277, 1447
AxyI CCTNAGG 1 cut(s) 513
BaeGI GKGCMC 2 cut(s) 253, 351
BamHI GGATCC 1 cut(s) 865
BanI GGYRCC 1 cut(s) 222
BanII GRGCYC 2 cut(s) 89, 253
BbrPI CACGTG 1 cut(s) 887
BbvI GCAGC 4 cut(s) 85, 88, 130, 403
BccI CCATC 6 cut(s) 103, 138, 461, 983, 1380, 1418
BceAI ACGGC 4 cut(s) 31, 86, 1128, 1490
BciT130I CCWGG 3 cut(s) 621, 1008, 1316
BclI TGATCA 1 cut(s) 297
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 2 cut(s) 598, 905
BfaI CTAG 1 cut(s) 1478
BfmI CTRYAG 1 cut(s) 597
BisI GCNGC 4 cut(s) 74, 77, 119, 392
BlsI GCNGC 4 cut(s) 75, 78, 120, 393
Bme1390I CCNGG 4 cut(s) 291, 621, 1008, 1316
Bme18I GGWCC 4 cut(s) 179, 635, 1277, 1447
BmgT120I GGNCC 6 cut(s) 179, 249, 250, 635, 1277, 1447
BmiI GGNNCC 6 cut(s) 224, 251, 510, 637, 867, 957
BmrFI CCNGG 4 cut(s) 291, 621, 1008, 1316
BmsI GCATC 5 cut(s) 643, 922, 1116, 1141, 1342
BpuMI CCSGG 1 cut(s) 291
BsaAI YACGTR 1 cut(s) 887
BsaHI GRCGYC 1 cut(s) 431
BsaI GGTCTC 2 cut(s) 598, 905
BsaJI CCNNGG 3 cut(s) 253, 1314, 1315
BsaWI WCCGGW 1 cut(s) 914
Bsc4I CCNNNNNNNGG 6 cut(s) 440, 644, 645, 985, 1444, 1456
Bse1I ACTGG 2 cut(s) 799, 1280
Bse21I CCTNAGG 1 cut(s) 513
BseBI CCWGG 3 cut(s) 621, 1008, 1316
BseDI CCNNGG 3 cut(s) 253, 1314, 1315
BseGI GGATG 7 cut(s) 114, 149, 811, 994, 1309, 1426, 1465
BseLI CCNNNNNNNGG 6 cut(s) 440, 644, 645, 985, 1444, 1456
BseMII CTCAG 3 cut(s) 344, 527, 579
BseNI ACTGG 2 cut(s) 799, 1280
BseRI GAGGAG 1 cut(s) 1271
BseSI GKGCMC 2 cut(s) 253, 351
BseXI GCAGC 4 cut(s) 85, 88, 130, 403
BseYI CCCAGC 1 cut(s) 1134
BsgI GTGCAG 1 cut(s) 1455
BshFI GGCC 2 cut(s) 251, 1143
BshNI GGYRCC 1 cut(s) 222
BsiSI CCGG 3 cut(s) 291, 803, 915
BslFI GGGAC 2 cut(s) 484, 621
BslI CCNNNNNNNGG 6 cut(s) 440, 644, 645, 985, 1444, 1456
BsmAI GTCTC 2 cut(s) 598, 905
BsmFI GGGAC 2 cut(s) 484, 621
BsnI GGCC 2 cut(s) 251, 1143
Bso31I GGTCTC 2 cut(s) 598, 905
Bsp120I GGGCCC 1 cut(s) 249
Bsp1286I GDGCHC 3 cut(s) 89, 253, 351
Bsp143I GATC 4 cut(s) 297, 487, 685, 865
BspACI CCGC 1 cut(s) 1395
BspANI GGCC 2 cut(s) 251, 1143
BspCNI CTCAG 3 cut(s) 343, 526, 580
BspLI GGNNCC 6 cut(s) 224, 251, 510, 637, 867, 957
BspPI GGATC 3 cut(s) 495, 860, 873
BspQI GCTCTTC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 222
BspTNI GGTCTC 2 cut(s) 598, 905
BsrI ACTGG 2 cut(s) 799, 1280
BssECI CCNNGG 3 cut(s) 253, 1314, 1315
BssMI GATC 4 cut(s) 297, 487, 685, 865
BssNI GRCGYC 1 cut(s) 431
BssT1I CCWWGG 1 cut(s) 253
Bst2UI CCWGG 3 cut(s) 621, 1008, 1316
Bst4CI ACNGT 6 cut(s) 279, 346, 817, 960, 1177, 1371
Bst6I CTCTTC 5 cut(s) 57, 531, 552, 600, 1113
BstACI GRCGYC 1 cut(s) 431
BstBAI YACGTR 1 cut(s) 887
BstDEI CTNAG 6 cut(s) 330, 497, 513, 588, 696, 1041
BstEII GGTNACC 1 cut(s) 1030
BstF5I GGATG 7 cut(s) 114, 149, 811, 994, 1309, 1426, 1465
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 4 cut(s) 300, 490, 688, 868
BstMAI GTCTC 2 cut(s) 598, 905
BstMBI GATC 4 cut(s) 297, 487, 685, 865
BstMWI GCNNNNNNNGC 4 cut(s) 73, 391, 1079, 1140
BstNI CCWGG 3 cut(s) 621, 1008, 1316
BstNSI RCATGY 4 cut(s) 176, 785, 1195, 1412
BstPI GGTNACC 1 cut(s) 1030
BstSCI CCNGG 4 cut(s) 289, 619, 1006, 1314
BstSFI CTRYAG 1 cut(s) 597
BstSLI GKGCMC 2 cut(s) 253, 351
BstV1I GCAGC 4 cut(s) 85, 88, 130, 403
BstX2I RGATCY 1 cut(s) 865
BstYI RGATCY 1 cut(s) 865
Bsu36I CCTNAGG 1 cut(s) 513
BsuRI GGCC 2 cut(s) 251, 1143
BtsCI GGATG 7 cut(s) 114, 149, 811, 994, 1309, 1426, 1465
BtsI GCAGTG 1 cut(s) 673
BtsIMutI CAGTG 6 cut(s) 275, 351, 456, 673, 1287, 1491
CaiI CAGNNNCTG 1 cut(s) 277
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 6 cut(s) 179, 249, 250, 635, 1277, 1447
CseI GACGC 1 cut(s) 439
Csp6I GTAC 1 cut(s) 223
CviAII CATG 7 cut(s) 173, 267, 317, 782, 1192, 1409, 1439
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 6 cut(s) 330, 497, 513, 588, 696, 1041
DpnI GATC 4 cut(s) 299, 489, 687, 867
DpnII GATC 4 cut(s) 297, 487, 685, 865
EaeI YGGCCR 1 cut(s) 1141
Eam1104I CTCTTC 5 cut(s) 57, 531, 552, 600, 1113
EarI CTCTTC 5 cut(s) 57, 531, 552, 600, 1113
Eco130I CCWWGG 1 cut(s) 253
Eco24I GRGCYC 2 cut(s) 89, 253
Eco31I GGTCTC 2 cut(s) 598, 905
Eco47I GGWCC 4 cut(s) 179, 635, 1277, 1447
Eco57I CTGAAG 3 cut(s) 971, 1127, 1289
Eco72I CACGTG 1 cut(s) 887
Eco81I CCTNAGG 1 cut(s) 513
Eco91I GGTNACC 1 cut(s) 1030
EcoO65I GGTNACC 1 cut(s) 1030
EcoRI GAATTC 1 cut(s) 452
EcoRII CCWGG 3 cut(s) 619, 1006, 1314
EcoT14I CCWWGG 1 cut(s) 253
EcoT38I GRGCYC 2 cut(s) 89, 253
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 7 cut(s) 176, 270, 320, 785, 1195, 1412, 1442
FaqI GGGAC 2 cut(s) 484, 621
FatI CATG 7 cut(s) 172, 266, 316, 781, 1191, 1408, 1438
FbaI TGATCA 1 cut(s) 297
Fnu4HI GCNGC 4 cut(s) 74, 77, 119, 392
FokI GGATG 7 cut(s) 121, 156, 818, 1001, 1296, 1433, 1472
FriOI GRGCYC 2 cut(s) 89, 253
Fsp4HI GCNGC 4 cut(s) 74, 77, 119, 392
FspBI CTAG 1 cut(s) 1478
GlaI GCGC 1 cut(s) 265
GluI GCNGC 4 cut(s) 74, 77, 119, 392
GsaI CCCAGC 1 cut(s) 1138
HaeIII GGCC 2 cut(s) 251, 1143
HapII CCGG 3 cut(s) 291, 803, 915
HgaI GACGC 1 cut(s) 439
HhaI GCGC 1 cut(s) 266
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 7 cut(s) 176, 270, 320, 785, 1195, 1412, 1442
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HincII GTYRAC 2 cut(s) 820, 904
HindII GTYRAC 2 cut(s) 820, 904
HindIII AAGCTT 1 cut(s) 1271
HinfI GANTC 4 cut(s) 25, 1018, 1286, 1306
HpaII CCGG 3 cut(s) 291, 803, 915
HphI GGTGA 8 cut(s) 23, 29, 170, 220, 410, 455, 1024, 1303
Hpy166II GTNNAC 5 cut(s) 820, 840, 904, 1197, 1285
Hpy188I TCNGA 9 cut(s) 22, 91, 196, 589, 712, 951, 1237, 1269, 1334
Hpy188III TCNNGA 4 cut(s) 515, 749, 869, 1457
Hpy8I GTNNAC 5 cut(s) 820, 840, 904, 1197, 1285
Hpy99I CGWCG 1 cut(s) 371
HpyAV CCTTC 6 cut(s) 107, 674, 724, 946, 1105, 1288
HpyCH4III ACNGT 6 cut(s) 279, 346, 817, 960, 1177, 1371
HpyCH4IV ACGT 4 cut(s) 128, 524, 886, 1003
HpyCH4V TGCA 8 cut(s) 10, 553, 617, 935, 1154, 1365, 1412, 1472
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 391, 1079, 1140
HpyF3I CTNAG 6 cut(s) 330, 497, 513, 588, 696, 1041
HpySE526I ACGT 4 cut(s) 128, 524, 886, 1003
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 7 cut(s) 176, 270, 320, 785, 1195, 1412, 1442
HspAI GCGC 1 cut(s) 264
KpnI GGTACC 1 cut(s) 226
Ksp22I TGATCA 1 cut(s) 297
Kzo9I GATC 4 cut(s) 297, 487, 685, 865
LguI GCTCTTC 1 cut(s) 57
Lsp1109I GCAGC 4 cut(s) 85, 88, 130, 403
LweI GCATC 5 cut(s) 643, 922, 1116, 1141, 1342
MaeI CTAG 1 cut(s) 1478
MaeII ACGT 4 cut(s) 128, 524, 886, 1003
MaeIII GTNAC 7 cut(s) 273, 416, 790, 811, 940, 1030, 1187
MalI GATC 4 cut(s) 299, 489, 687, 867
MboI GATC 4 cut(s) 297, 487, 685, 865
MfeI CAATTG 1 cut(s) 1164
MflI RGATCY 1 cut(s) 865
MhlI GDGCHC 3 cut(s) 89, 253, 351
MlyI GAGTC 1 cut(s) 1280
MroXI GAANNNNTTC 1 cut(s) 567
MseI TTAA 8 cut(s) 215, 612, 767, 774, 1241, 1338, 1430, 1434
MslI CAYNNNNRTG 2 cut(s) 786, 1413
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 3 cut(s) 291, 803, 915
MspR9I CCNGG 4 cut(s) 291, 621, 1008, 1316
MunI CAATTG 1 cut(s) 1164
MvaI CCWGG 3 cut(s) 621, 1008, 1316
MwoI GCNNNNNNNGC 4 cut(s) 73, 391, 1079, 1140
NciI CCSGG 1 cut(s) 291
NdeII GATC 4 cut(s) 297, 487, 685, 865
NlaIII CATG 7 cut(s) 176, 270, 320, 785, 1195, 1412, 1442
NlaIV GGNNCC 6 cut(s) 224, 251, 510, 637, 867, 957
NmuCI GTSAC 4 cut(s) 273, 416, 790, 1030
NspI RCATGY 4 cut(s) 176, 785, 1195, 1412
PacI TTAATTAA 1 cut(s) 1434
PasI CCCWGGG 1 cut(s) 1315
PciI ACATGT 3 cut(s) 172, 781, 1191
PciSI GCTCTTC 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 3 cut(s) 25, 1018, 1306
PflMI CCANNNNNTGG 2 cut(s) 985, 1444
PkrI GCNGC 4 cut(s) 75, 78, 120, 393
PleI GAGTC 1 cut(s) 1280
PmaCI CACGTG 1 cut(s) 887
PmlI CACGTG 1 cut(s) 887
PpsI GAGTC 1 cut(s) 1280
Ppu21I YACGTR 1 cut(s) 887
PscI ACATGT 3 cut(s) 172, 781, 1191
PsiI TTATAA 1 cut(s) 857
Psp1406I AACGTT 1 cut(s) 128
Psp6I CCWGG 3 cut(s) 619, 1006, 1314
PspCI CACGTG 1 cut(s) 887
PspEI GGTNACC 1 cut(s) 1030
PspFI CCCAGC 1 cut(s) 1134
PspGI CCWGG 3 cut(s) 619, 1006, 1314
PspN4I GGNNCC 6 cut(s) 224, 251, 510, 637, 867, 957
PspOMI GGGCCC 1 cut(s) 249
PspPI GGNCC 6 cut(s) 179, 249, 250, 635, 1277, 1447
PstNI CAGNNNCTG 1 cut(s) 277
PsuI RGATCY 1 cut(s) 865
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 2 cut(s) 786, 1413
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 8 cut(s) 215, 612, 767, 774, 1241, 1338, 1430, 1434
SatI GCNGC 4 cut(s) 74, 77, 119, 392
Sau3AI GATC 4 cut(s) 297, 487, 685, 865
Sau96I GGNCC 6 cut(s) 179, 249, 250, 635, 1277, 1447
SchI GAGTC 1 cut(s) 1280
ScrFI CCNGG 4 cut(s) 291, 621, 1008, 1316
SduI GDGCHC 3 cut(s) 89, 253, 351
SfaNI GCATC 5 cut(s) 643, 922, 1116, 1141, 1342
SfcI CTRYAG 1 cut(s) 597
SinI GGWCC 4 cut(s) 179, 635, 1277, 1447
SmiMI CAYNNNNRTG 2 cut(s) 786, 1413
SsiI CCGC 1 cut(s) 1395
SspMI CTAG 1 cut(s) 1478
StyD4I CCNGG 4 cut(s) 289, 619, 1006, 1314
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 6 cut(s) 279, 346, 817, 960, 1177, 1371
TaiI ACGT 4 cut(s) 131, 527, 889, 1006
TaqII GACCGA 1 cut(s) 1018
TfiI GAWTC 3 cut(s) 25, 1018, 1306
Tru1I TTAA 8 cut(s) 215, 612, 767, 774, 1241, 1338, 1430, 1434
Tru9I TTAA 8 cut(s) 215, 612, 767, 774, 1241, 1338, 1430, 1434
TscAI CASTG 6 cut(s) 282, 351, 463, 673, 1287, 1498
TseFI GTSAC 4 cut(s) 273, 416, 790, 1030
TseI GCWGC 4 cut(s) 73, 76, 118, 391
Tsp45I GTSAC 4 cut(s) 273, 416, 790, 1030
TspDTI ATGAA 3 cut(s) 139, 1236, 1391
TspGWI ACGGA 1 cut(s) 1439
TspRI CASTG 6 cut(s) 282, 351, 463, 673, 1287, 1498
Van91I CCANNNNNTGG 2 cut(s) 985, 1444
VpaK11BI GGWCC 4 cut(s) 179, 635, 1277, 1447
XapI RAATTY 4 cut(s) 452, 981, 1064, 1225
XceI RCATGY 4 cut(s) 176, 785, 1195, 1412
XcmI CCANNNNNNNNNTGG 1 cut(s) 986
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 1 cut(s) 1478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.