Splicing factor U2AF-associated protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G16260 |
| fragaria_vesca | FvH4_6g00060 |
| malus_domestica | MD00G1017100.v1.1 MD12G1261400.v1.1 |
| prunus_persica | Prupe.6G365400_v2.0.a1 Prupe.6G365400_v2.0.a1 Prupe.6G365400_v2.0.a1 |
| pyrus_communis | pycom02g06260 pycom04g22010 pycom04g22020 pycom12g24240 |
| rosa_chinensis | RchiOBHm_Chr3g0447391 |
| rosa_laevigata | RLG00000026003 |
| rosa_multiflora | Rmu_ssc0000473.1_g000016 |
| rosa_roxburghii | Rroxscaffold_6G00425590 |
| rosa_rugosa | Rorug02G0601100 |
| rosa_samantha | Rh3AG001200 Rh3BG000900 Rh3CG000900 Rh3DG001100 |
| rosa_wichuraiana | Rw3G000060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1426 |
| AccI | GTMKAC | 1 cut(s) | 881 |
| AccII | CGCG | 1 cut(s) | 207 |
| AccIII | TCCGGA | 1 cut(s) | 1431 |
| AciI | CCGC | 1 cut(s) | 416 |
| AclWI | GGATC | 4 cut(s) | 477, 611, 842, 855 |
| AcsI | RAATTY | 5 cut(s) | 129, 606, 673, 963, 1207 |
| AcuI | CTGAAG | 1 cut(s) | 1109 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 338, 422, 831, 1426, 1438 |
| AflIII | ACRYGT | 2 cut(s) | 763, 1173 |
| AgsI | TTSAA | 5 cut(s) | 411, 582, 678, 934, 1321 |
| AjnI | CCWGG | 1 cut(s) | 1296 |
| AluBI | AGCT | 6 cut(s) | 719, 748, 877, 1022, 1154, 1255 |
| AluI | AGCT | 6 cut(s) | 719, 748, 877, 1022, 1154, 1255 |
| AlwI | GGATC | 4 cut(s) | 477, 611, 842, 855 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 280, 1157 |
| Aor13HI | TCCGGA | 1 cut(s) | 1431 |
| ApeKI | GCWGC | 2 cut(s) | 79, 274 |
| ApoI | RAATTY | 5 cut(s) | 129, 606, 673, 963, 1207 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 610 |
| AspLEI | GCGC | 2 cut(s) | 207, 1199 |
| AspS9I | GGNCC | 3 cut(s) | 182, 1259, 1429 |
| AsuHPI | GGTGA | 4 cut(s) | 173, 223, 295, 1006 |
| AvaII | GGWCC | 3 cut(s) | 182, 1259, 1429 |
| AxyI | CCTNAGG | 1 cut(s) | 495 |
| BaeGI | GKGCMC | 1 cut(s) | 333 |
| BamHI | GGATCC | 1 cut(s) | 847 |
| BanII | GRGCYC | 1 cut(s) | 942 |
| BauI | CACGAG | 1 cut(s) | 867 |
| BbsI | GAAGAC | 2 cut(s) | 541, 639 |
| BbvI | GCAGC | 2 cut(s) | 91, 286 |
| BccI | CCATC | 6 cut(s) | 106, 141, 443, 965, 1362, 1400 |
| BceAI | ACGGC | 2 cut(s) | 37, 92 |
| BciT130I | CCWGG | 1 cut(s) | 1298 |
| BciVI | GTATCC | 1 cut(s) | 688 |
| BfuI | GTATCC | 1 cut(s) | 688 |
| BisI | GCNGC | 2 cut(s) | 80, 275 |
| BlsI | GCNGC | 2 cut(s) | 81, 276 |
| Bme1390I | CCNGG | 1 cut(s) | 1298 |
| Bme18I | GGWCC | 3 cut(s) | 182, 1259, 1429 |
| BmgT120I | GGNCC | 3 cut(s) | 182, 1259, 1429 |
| BmiI | GGNNCC | 6 cut(s) | 91, 184, 492, 849, 939, 1261 |
| BmrFI | CCNGG | 1 cut(s) | 1298 |
| BmrI | ACTGGG | 2 cut(s) | 320, 330 |
| BmsI | GCATC | 6 cut(s) | 586, 904, 1098, 1123, 1324, 1438 |
| BmuI | ACTGGG | 2 cut(s) | 320, 330 |
| BpiI | GAAGAC | 2 cut(s) | 541, 639 |
| Bsa29I | ATCGAT | 1 cut(s) | 441 |
| BsaAI | YACGTR | 1 cut(s) | 1214 |
| BsaJI | CCNNGG | 3 cut(s) | 1263, 1296, 1297 |
| BsaWI | WCCGGW | 1 cut(s) | 1431 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 338, 422, 831, 1426, 1438 |
| Bse1I | ACTGG | 5 cut(s) | 326, 336, 607, 781, 901 |
| Bse21I | CCTNAGG | 1 cut(s) | 495 |
| BseAI | TCCGGA | 1 cut(s) | 1431 |
| BseBI | CCWGG | 1 cut(s) | 1298 |
| BseCI | ATCGAT | 1 cut(s) | 441 |
| BseDI | CCNNGG | 3 cut(s) | 1263, 1296, 1297 |
| BseGI | GGATG | 6 cut(s) | 152, 976, 1291, 1339, 1408, 1447 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 338, 422, 831, 1426, 1438 |
| BseMII | CTCAG | 3 cut(s) | 509, 957, 1284 |
| BseNI | ACTGG | 5 cut(s) | 326, 336, 607, 781, 901 |
| BseRI | GAGGAG | 3 cut(s) | 533, 602, 1253 |
| BseSI | GKGCMC | 1 cut(s) | 333 |
| BseXI | GCAGC | 2 cut(s) | 91, 286 |
| BseYI | CCCAGC | 1 cut(s) | 1116 |
| BsgI | GTGCAG | 1 cut(s) | 1236 |
| Bsh1236I | CGCG | 1 cut(s) | 207 |
| BshVI | ATCGAT | 1 cut(s) | 441 |
| BsiSI | CCGG | 1 cut(s) | 1432 |
| BslFI | GGGAC | 2 cut(s) | 168, 1245 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 338, 422, 831, 1426, 1438 |
| BsmFI | GGGAC | 2 cut(s) | 168, 1245 |
| BsmI | GAATGC | 1 cut(s) | 562 |
| Bsp1286I | GDGCHC | 2 cut(s) | 333, 942 |
| Bsp13I | TCCGGA | 1 cut(s) | 1431 |
| Bsp143I | GATC | 3 cut(s) | 469, 616, 847 |
| BspACI | CCGC | 1 cut(s) | 416 |
| BspCNI | CTCAG | 3 cut(s) | 508, 956, 1283 |
| BspDI | ATCGAT | 1 cut(s) | 441 |
| BspEI | TCCGGA | 1 cut(s) | 1431 |
| BspFNI | CGCG | 1 cut(s) | 207 |
| BspHI | TCATGA | 1 cut(s) | 552 |
| BspLI | GGNNCC | 6 cut(s) | 91, 184, 492, 849, 939, 1261 |
| BspPI | GGATC | 4 cut(s) | 477, 611, 842, 855 |
| BsrI | ACTGG | 5 cut(s) | 326, 336, 607, 781, 901 |
| BssECI | CCNNGG | 3 cut(s) | 1263, 1296, 1297 |
| BssMI | GATC | 3 cut(s) | 469, 616, 847 |
| BssNAI | GTATAC | 1 cut(s) | 882 |
| BssSI | CACGAG | 1 cut(s) | 867 |
| Bst1107I | GTATAC | 1 cut(s) | 882 |
| Bst2BI | CACGAG | 1 cut(s) | 867 |
| Bst2UI | CCWGG | 1 cut(s) | 1298 |
| Bst4CI | ACNGT | 7 cut(s) | 282, 640, 650, 690, 799, 1143, 1159 |
| Bst6I | CTCTTC | 4 cut(s) | 426, 534, 583, 1095 |
| BstBAI | YACGTR | 1 cut(s) | 1214 |
| BstC8I | GCNNGC | 2 cut(s) | 209, 1227 |
| BstDEI | CTNAG | 7 cut(s) | 381, 479, 495, 943, 1023, 1270, 1459 |
| BstDSI | CCRYGG | 1 cut(s) | 1263 |
| BstEII | GGTNACC | 1 cut(s) | 301 |
| BstF5I | GGATG | 6 cut(s) | 152, 976, 1291, 1339, 1408, 1447 |
| BstFNI | CGCG | 1 cut(s) | 207 |
| BstHHI | GCGC | 2 cut(s) | 207, 1199 |
| BstKTI | GATC | 3 cut(s) | 472, 619, 850 |
| BstMBI | GATC | 3 cut(s) | 469, 616, 847 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 11, 1061 |
| BstNI | CCWGG | 1 cut(s) | 1298 |
| BstNSI | RCATGY | 4 cut(s) | 508, 767, 1177, 1394 |
| BstPI | GGTNACC | 1 cut(s) | 301 |
| BstSCI | CCNGG | 1 cut(s) | 1296 |
| BstSLI | GKGCMC | 1 cut(s) | 333 |
| BstUI | CGCG | 1 cut(s) | 207 |
| BstV1I | GCAGC | 2 cut(s) | 91, 286 |
| BstV2I | GAAGAC | 2 cut(s) | 541, 639 |
| BstX2I | RGATCY | 1 cut(s) | 847 |
| BstYI | RGATCY | 1 cut(s) | 847 |
| BstZ17I | GTATAC | 1 cut(s) | 882 |
| Bsu15I | ATCGAT | 1 cut(s) | 441 |
| Bsu36I | CCTNAGG | 1 cut(s) | 495 |
| BsuI | GTATCC | 1 cut(s) | 688 |
| BsuTUI | ATCGAT | 1 cut(s) | 441 |
| BtgI | CCRYGG | 1 cut(s) | 1263 |
| BtsCI | GGATG | 6 cut(s) | 152, 976, 1291, 1339, 1408, 1447 |
| BtsIMutI | CAGTG | 4 cut(s) | 278, 333, 343, 636 |
| Cac8I | GCNNGC | 2 cut(s) | 209, 1227 |
| CaiI | CAGNNNCTG | 2 cut(s) | 280, 1157 |
| CciI | TCATGA | 1 cut(s) | 552 |
| CfoI | GCGC | 2 cut(s) | 207, 1199 |
| Cfr13I | GGNCC | 3 cut(s) | 182, 1259, 1429 |
| ClaI | ATCGAT | 1 cut(s) | 441 |
| CseI | GACGC | 1 cut(s) | 974 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 446, 481 |
| CviAII | CATG | 8 cut(s) | 320, 505, 553, 764, 1006, 1174, 1391, 1421 |
| DdeI | CTNAG | 7 cut(s) | 381, 479, 495, 943, 1023, 1270, 1459 |
| DpnI | GATC | 3 cut(s) | 471, 618, 849 |
| DpnII | GATC | 3 cut(s) | 469, 616, 847 |
| Eam1104I | CTCTTC | 4 cut(s) | 426, 534, 583, 1095 |
| EarI | CTCTTC | 4 cut(s) | 426, 534, 583, 1095 |
| Eco24I | GRGCYC | 1 cut(s) | 942 |
| Eco47I | GGWCC | 3 cut(s) | 182, 1259, 1429 |
| Eco57I | CTGAAG | 1 cut(s) | 1109 |
| Eco81I | CCTNAGG | 1 cut(s) | 495 |
| Eco91I | GGTNACC | 1 cut(s) | 301 |
| EcoO65I | GGTNACC | 1 cut(s) | 301 |
| EcoRII | CCWGG | 1 cut(s) | 1296 |
| EcoT22I | ATGCAT | 1 cut(s) | 1426 |
| EcoT38I | GRGCYC | 1 cut(s) | 942 |
| FaeI | CATG | 8 cut(s) | 323, 508, 556, 767, 1009, 1177, 1394, 1424 |
| FaqI | GGGAC | 2 cut(s) | 168, 1245 |
| FatI | CATG | 8 cut(s) | 319, 504, 552, 763, 1005, 1173, 1390, 1420 |
| FblI | GTMKAC | 1 cut(s) | 881 |
| Fnu4HI | GCNGC | 2 cut(s) | 80, 275 |
| FokI | GGATG | 6 cut(s) | 159, 983, 1278, 1346, 1415, 1454 |
| FriOI | GRGCYC | 1 cut(s) | 942 |
| Fsp4HI | GCNGC | 2 cut(s) | 80, 275 |
| GlaI | GCGC | 2 cut(s) | 206, 1198 |
| GluI | GCNGC | 2 cut(s) | 80, 275 |
| GsaI | CCCAGC | 1 cut(s) | 1120 |
| HapII | CCGG | 1 cut(s) | 1432 |
| HgaI | GACGC | 1 cut(s) | 974 |
| HhaI | GCGC | 2 cut(s) | 207, 1199 |
| Hin1II | CATG | 8 cut(s) | 323, 508, 556, 767, 1009, 1177, 1394, 1424 |
| Hin6I | GCGC | 2 cut(s) | 205, 1197 |
| HinP1I | GCGC | 2 cut(s) | 205, 1197 |
| HincII | GTYRAC | 2 cut(s) | 646, 802 |
| HindII | GTYRAC | 2 cut(s) | 646, 802 |
| HindIII | AAGCTT | 1 cut(s) | 1253 |
| HinfI | GANTC | 9 cut(s) | 31, 575, 667, 854, 1147, 1268, 1288, 1317, 1435 |
| HpaI | GTTAAC | 1 cut(s) | 646 |
| HpaII | CCGG | 1 cut(s) | 1432 |
| HphI | GGTGA | 4 cut(s) | 173, 223, 295, 1006 |
| Hpy166II | GTNNAC | 5 cut(s) | 646, 802, 882, 1179, 1267 |
| Hpy188I | TCNGA | 9 cut(s) | 28, 38, 94, 199, 571, 616, 694, 1251, 1477 |
| Hpy188III | TCNNGA | 7 cut(s) | 497, 553, 731, 851, 1127, 1432, 1439 |
| Hpy8I | GTNNAC | 5 cut(s) | 646, 802, 882, 1179, 1267 |
| HpyAV | CCTTC | 6 cut(s) | 62, 417, 630, 928, 1087, 1324 |
| HpyCH4III | ACNGT | 7 cut(s) | 282, 640, 650, 690, 799, 1143, 1159 |
| HpyCH4IV | ACGT | 1 cut(s) | 1213 |
| HpyCH4V | TGCA | 9 cut(s) | 535, 599, 917, 1136, 1217, 1225, 1347, 1394, 1424 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 11, 1061 |
| HpyF3I | CTNAG | 7 cut(s) | 381, 479, 495, 943, 1023, 1270, 1459 |
| HpySE526I | ACGT | 1 cut(s) | 1213 |
| Hsp92II | CATG | 8 cut(s) | 323, 508, 556, 767, 1009, 1177, 1394, 1424 |
| HspAI | GCGC | 2 cut(s) | 205, 1197 |
| Kpn2I | TCCGGA | 1 cut(s) | 1431 |
| KspAI | GTTAAC | 1 cut(s) | 646 |
| Kzo9I | GATC | 3 cut(s) | 469, 616, 847 |
| LmnI | GCTCC | 1 cut(s) | 937 |
| Lsp1109I | GCAGC | 2 cut(s) | 91, 286 |
| LweI | GCATC | 6 cut(s) | 586, 904, 1098, 1123, 1324, 1438 |
| MaeII | ACGT | 1 cut(s) | 1213 |
| MaeIII | GTNAC | 7 cut(s) | 252, 301, 772, 793, 922, 1012, 1169 |
| MalI | GATC | 3 cut(s) | 471, 618, 849 |
| MboI | GATC | 3 cut(s) | 469, 616, 847 |
| MflI | RGATCY | 1 cut(s) | 847 |
| MhlI | GDGCHC | 2 cut(s) | 333, 942 |
| MlyI | GAGTC | 2 cut(s) | 569, 1262 |
| MmeI | TCCRAC | 1 cut(s) | 672 |
| Mph1103I | ATGCAT | 1 cut(s) | 1426 |
| MroI | TCCGGA | 1 cut(s) | 1431 |
| MroXI | GAANNNNTTC | 1 cut(s) | 610 |
| MseI | TTAA | 4 cut(s) | 218, 645, 1412, 1416 |
| MslI | CAYNNNNRTG | 2 cut(s) | 768, 1395 |
| MspI | CCGG | 1 cut(s) | 1432 |
| MspR9I | CCNGG | 1 cut(s) | 1298 |
| Mva1269I | GAATGC | 1 cut(s) | 562 |
| MvaI | CCWGG | 1 cut(s) | 1298 |
| MvnI | CGCG | 1 cut(s) | 207 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 11, 1061 |
| NdeII | GATC | 3 cut(s) | 469, 616, 847 |
| NlaIII | CATG | 8 cut(s) | 323, 508, 556, 767, 1009, 1177, 1394, 1424 |
| NlaIV | GGNNCC | 6 cut(s) | 91, 184, 492, 849, 939, 1261 |
| NmuCI | GTSAC | 4 cut(s) | 252, 301, 772, 1012 |
| NsiI | ATGCAT | 1 cut(s) | 1426 |
| NspI | RCATGY | 4 cut(s) | 508, 767, 1177, 1394 |
| PacI | TTAATTAA | 1 cut(s) | 1416 |
| PagI | TCATGA | 1 cut(s) | 552 |
| PasI | CCCWGGG | 1 cut(s) | 1297 |
| PciI | ACATGT | 2 cut(s) | 763, 1173 |
| PctI | GAATGC | 1 cut(s) | 562 |
| PdmI | GAANNNNTTC | 1 cut(s) | 610 |
| PfeI | GAWTC | 7 cut(s) | 31, 667, 854, 1147, 1288, 1317, 1435 |
| PflFI | GACNNNGTC | 1 cut(s) | 1271 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1426 |
| PkrI | GCNGC | 2 cut(s) | 81, 276 |
| PleI | GAGTC | 2 cut(s) | 569, 1262 |
| PpsI | GAGTC | 2 cut(s) | 569, 1262 |
| Ppu21I | YACGTR | 1 cut(s) | 1214 |
| PscI | ACATGT | 2 cut(s) | 763, 1173 |
| Psp6I | CCWGG | 1 cut(s) | 1296 |
| PspEI | GGTNACC | 1 cut(s) | 301 |
| PspFI | CCCAGC | 1 cut(s) | 1116 |
| PspGI | CCWGG | 1 cut(s) | 1296 |
| PspN4I | GGNNCC | 6 cut(s) | 91, 184, 492, 849, 939, 1261 |
| PspPI | GGNCC | 3 cut(s) | 182, 1259, 1429 |
| PstNI | CAGNNNCTG | 2 cut(s) | 280, 1157 |
| PsuI | RGATCY | 1 cut(s) | 847 |
| PsyI | GACNNNGTC | 1 cut(s) | 1271 |
| RseI | CAYNNNNRTG | 2 cut(s) | 768, 1395 |
| SaqAI | TTAA | 4 cut(s) | 218, 645, 1412, 1416 |
| SatI | GCNGC | 2 cut(s) | 80, 275 |
| Sau3AI | GATC | 3 cut(s) | 469, 616, 847 |
| Sau96I | GGNCC | 3 cut(s) | 182, 1259, 1429 |
| SchI | GAGTC | 2 cut(s) | 569, 1262 |
| ScrFI | CCNGG | 1 cut(s) | 1298 |
| SduI | GDGCHC | 2 cut(s) | 333, 942 |
| SfaNI | GCATC | 6 cut(s) | 586, 904, 1098, 1123, 1324, 1438 |
| SinI | GGWCC | 3 cut(s) | 182, 1259, 1429 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 768, 1395 |
| SsiI | CCGC | 1 cut(s) | 416 |
| SspI | AATATT | 1 cut(s) | 105 |
| StyD4I | CCNGG | 1 cut(s) | 1296 |
| TaaI | ACNGT | 7 cut(s) | 282, 640, 650, 690, 799, 1143, 1159 |
| TaiI | ACGT | 1 cut(s) | 1216 |
| TaqI | TCGA | 2 cut(s) | 441, 948 |
| TfiI | GAWTC | 7 cut(s) | 31, 667, 854, 1147, 1288, 1317, 1435 |
| Tru1I | TTAA | 4 cut(s) | 218, 645, 1412, 1416 |
| Tru9I | TTAA | 4 cut(s) | 218, 645, 1412, 1416 |
| TscAI | CASTG | 4 cut(s) | 285, 333, 343, 643 |
| TseFI | GTSAC | 4 cut(s) | 252, 301, 772, 1012 |
| TseI | GCWGC | 2 cut(s) | 79, 274 |
| Tsp45I | GTSAC | 4 cut(s) | 252, 301, 772, 1012 |
| TspDTI | ATGAA | 5 cut(s) | 427, 541, 569, 1218, 1373 |
| TspGWI | ACGGA | 1 cut(s) | 713 |
| TspRI | CASTG | 4 cut(s) | 285, 333, 343, 643 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1271 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1426 |
| VpaK11BI | GGWCC | 3 cut(s) | 182, 1259, 1429 |
| XapI | RAATTY | 5 cut(s) | 129, 606, 673, 963, 1207 |
| XceI | RCATGY | 4 cut(s) | 508, 767, 1177, 1394 |
| XmiI | GTMKAC | 1 cut(s) | 881 |
| XmnI | GAANNNNTTC | 1 cut(s) | 610 |
| Zsp2I | ATGCAT | 1 cut(s) | 1426 |