Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010500

Physical Location & Seq

Genomic Coordinates Forward (+)

22952693 .. 22954639

Gene Structure 1947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g22010.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGACGTTGGAGGACTTGCAGAGTCACCACCTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCAAGCGCAGCAAATTCATTCGGGAGTTGCAGCAGCAGCAGGGTGGGAGCAGAAAAGATTGGGGACGGACGAGTTGAGTGAAGTGGGATGGTTCATTCTGGGCGAAAATCAACAGCATGTTGGTCCCTATGCATTCTCGGAGCTGCGGGAACATTTCTTAAATGGATACCTCACCCTCCATACGCTCGTCTGGGCTCAAGGAAGAAGCTCATGGCAGCCACTCTCCTCCATTCCCGACCTCGTCACTGCAATATCCCATCACGACCAAGTACCTCATGTTTCAACCGCAGTGCCCCCAATCCCAACTGATGATGAGGATGACTTCGACAAATGGCAGAAGCATGTATGCGAGGCAGAACAAGCAGATAGTGACAGACCTTCTACGCCCCCCGAGGGAGAGGAAGAATTCACCGATGATGATGGGACAACATACAAGTGGGATCGGGGTCTTAGGGCTTGGGTTCCCCAGGATAGCGCTTTCGGGGTAGAAGATATGACTTTTTTGCAGGAAGAGGAAGTTTTACCAGCTGCCAATTTTTCTGAAGCCACCGCAAGGGAAGAGGTTAATGCACCTGTAAAGGCTTCCAATCCCTCTAAAGAAGATGATATCAATGGTAGCAGTGAGTTAGAAGGCAATCAAAGTTCTAAGAGGAAATTGTCGGATAAGGAAGCTGACAAGAAGCTAATAGACCTCCTGATAGTTGGTTTGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339 RRM_1

Protein Analysis

261

Amino Acids

29.16

Weight (kDa)

4.29

Isoelectric Point (pI)

59.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16260
fragaria_vesca	FvH4_6g00060
malus_domestica	MD00G1017100.v1.1 MD12G1261400.v1.1
prunus_persica	Prupe.6G365400_v2.0.a1 Prupe.6G365400_v2.0.a1 Prupe.6G365400_v2.0.a1
pyrus_communis	pycom02g06260 pycom04g22010 pycom04g22020 pycom12g24240
rosa_chinensis	RchiOBHm_Chr3g0447391
rosa_laevigata	RLG00000026003
rosa_multiflora	Rmu_ssc0000473.1_g000016
rosa_roxburghii	Rroxscaffold_6G00425590
rosa_rugosa	Rorug02G0601100
rosa_samantha	Rh3AG001200 Rh3BG000900 Rh3CG000900 Rh3DG001100
rosa_wichuraiana	Rw3G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	214, 354, 618
AclWI	GGATC	1 cut(s)	516
AcsI	RAATTY	2 cut(s)	81, 473
AcuI	CTGAAG	1 cut(s)	630
AfaI	GTAC	1 cut(s)	339
AfeI	AGCGCT	1 cut(s)	544
AfiI	CCNNNNNNNGG	2 cut(s)	461, 621
AgsI	TTSAA	1 cut(s)	351
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	6 cut(s)	211, 276, 596, 740, 751, 780
AluI	AGCT	6 cut(s)	211, 276, 596, 740, 751, 780
AlwI	GGATC	1 cut(s)	516
Ama87I	CYCGRG	1 cut(s)	458
Aor51HI	AGCGCT	1 cut(s)	544
ApeKI	GCWGC	7 cut(s)	76, 98, 101, 104, 211, 283, 596
ApoI	RAATTY	2 cut(s)	81, 473
AspLEI	GCGC	2 cut(s)	76, 545
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	3 cut(s)	17, 232, 469
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	363
BanII	GRGCYC	1 cut(s)	265
BbvI	GCAGC	7 cut(s)	88, 110, 113, 116, 198, 295, 583
BccI	CCATC	3 cut(s)	150, 333, 482
BciT130I	CCWGG	1 cut(s)	536
BciVI	GTATCC	1 cut(s)	227
BfaI	CTAG	1 cut(s)	32
BfoI	RGCGCY	1 cut(s)	546
BfuI	GTATCC	1 cut(s)	227
BisI	GCNGC	7 cut(s)	77, 99, 102, 105, 212, 284, 597
BlsI	GCNGC	7 cut(s)	78, 100, 103, 106, 213, 285, 598
Bme1390I	CCNGG	1 cut(s)	536
Bme18I	GGWCC	1 cut(s)	191
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	2 cut(s)	193, 531
BmrFI	CCNGG	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	459, 534
Bsc4I	CCNNNNNNNGG	2 cut(s)	461, 621
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	2 cut(s)	459, 534
BseGI	GGATG	2 cut(s)	161, 391
BseLI	CCNNNNNNNGG	2 cut(s)	461, 621
BseRI	GAGGAG	1 cut(s)	283
BseSI	GKGCMC	1 cut(s)	363
BseXI	GCAGC	7 cut(s)	88, 110, 113, 116, 198, 295, 583
BsiHKCI	CYCGRG	1 cut(s)	458
BslFI	GGGAC	3 cut(s)	145, 177, 505
BslI	CCNNNNNNNGG	2 cut(s)	461, 621
BsmFI	GGGAC	3 cut(s)	145, 177, 505
BsmI	GAATGC	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	458
Bsp1286I	GDGCHC	2 cut(s)	265, 363
Bsp143I	GATC	1 cut(s)	508
BspACI	CCGC	3 cut(s)	214, 354, 618
BspLI	GGNNCC	2 cut(s)	193, 531
BspPI	GGATC	1 cut(s)	516
BspQI	GCTCTTC	1 cut(s)	60
BssECI	CCNNGG	2 cut(s)	459, 534
BssMI	GATC	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	536
Bst6I	CTCTTC	3 cut(s)	60, 573, 621
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	518, 714
BstF5I	GGATG	2 cut(s)	161, 391
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	2 cut(s)	76, 545
BstKTI	GATC	1 cut(s)	511
BstMBI	GATC	1 cut(s)	508
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 104, 428
BstNI	CCWGG	1 cut(s)	536
BstNSI	RCATGY	2 cut(s)	188, 413
BstSCI	CCNGG	1 cut(s)	534
BstSLI	GKGCMC	1 cut(s)	363
BstV1I	GCAGC	7 cut(s)	88, 110, 113, 116, 198, 295, 583
BsuI	GTATCC	1 cut(s)	227
BtsCI	GGATG	2 cut(s)	161, 391
BtsI	GCAGTG	3 cut(s)	312, 363, 694
BtsIMutI	CAGTG	3 cut(s)	312, 363, 694
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	2 cut(s)	76, 545
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	4 cut(s)	185, 279, 344, 410
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	2 cut(s)	518, 714
DpnI	GATC	1 cut(s)	510
DpnII	GATC	1 cut(s)	508
Eam1104I	CTCTTC	3 cut(s)	60, 573, 621
EarI	CTCTTC	3 cut(s)	60, 573, 621
Eco24I	GRGCYC	1 cut(s)	265
Eco32I	GATATC	1 cut(s)	676
Eco47I	GGWCC	1 cut(s)	191
Eco47III	AGCGCT	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	630
Eco88I	CYCGRG	1 cut(s)	458
EcoRI	GAATTC	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	534
EcoRV	GATATC	1 cut(s)	676
EcoT22I	ATGCAT	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	265
FaeI	CATG	4 cut(s)	188, 282, 347, 413
FaiI	YATR	9 cut(s)	186, 198, 249, 280, 345, 411, 415, 499, 563
FaqI	GGGAC	3 cut(s)	145, 177, 505
FatI	CATG	4 cut(s)	184, 278, 343, 409
FauI	CCCGC	1 cut(s)	207
Fnu4HI	GCNGC	7 cut(s)	77, 99, 102, 105, 212, 284, 597
FokI	GGATG	2 cut(s)	168, 398
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	7 cut(s)	77, 99, 102, 105, 212, 284, 597
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	2 cut(s)	75, 544
GluI	GCNGC	7 cut(s)	77, 99, 102, 105, 212, 284, 597
HaeII	RGCGCY	1 cut(s)	546
HhaI	GCGC	2 cut(s)	76, 545
Hin1II	CATG	4 cut(s)	188, 282, 347, 413
Hin6I	GCGC	2 cut(s)	74, 543
HinP1I	GCGC	2 cut(s)	74, 543
HinfI	GANTC	1 cut(s)	22
HphI	GGTGA	3 cut(s)	17, 232, 469
Hpy188I	TCNGA	3 cut(s)	208, 610, 730
Hpy188III	TCNNGA	4 cut(s)	90, 302, 329, 763
HpyAV	CCTTC	2 cut(s)	456, 692
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	6 cut(s)	19, 98, 200, 317, 574, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 104, 428
HpyF3I	CTNAG	2 cut(s)	518, 714
HpySE526I	ACGT	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	188, 282, 347, 413
HspAI	GCGC	2 cut(s)	74, 543
Kzo9I	GATC	1 cut(s)	508
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	2 cut(s)	115, 208
LpnPI	CCDG	9 cut(s)	93, 152, 244, 521, 548, 560, 606, 654, 776
Lsp1109I	GCAGC	7 cut(s)	88, 110, 113, 116, 198, 295, 583
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	3 cut(s)	23, 310, 437
MalI	GATC	1 cut(s)	510
MboI	GATC	1 cut(s)	508
MhlI	GDGCHC	2 cut(s)	265, 363
MluCI	AATT	4 cut(s)	81, 473, 601, 722
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	708
Mph1103I	ATGCAT	1 cut(s)	202
MseI	TTAA	2 cut(s)	227, 633
MslI	CAYNNNNRTG	1 cut(s)	502
MspA1I	CMGCKG	1 cut(s)	596
MspR9I	CCNGG	1 cut(s)	536
Mva1269I	GAATGC	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	3 cut(s)	76, 104, 428
NdeII	GATC	1 cut(s)	508
NlaIII	CATG	4 cut(s)	188, 282, 347, 413
NlaIV	GGNNCC	2 cut(s)	193, 531
NmuCI	GTSAC	3 cut(s)	23, 310, 437
NsiI	ATGCAT	1 cut(s)	202
NspI	RCATGY	2 cut(s)	188, 413
PciSI	GCTCTTC	1 cut(s)	60
PctI	GAATGC	1 cut(s)	200
PflFI	GACNNNGTC	1 cut(s)	308
PkrI	GCNGC	7 cut(s)	78, 100, 103, 106, 213, 285, 598
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	2 cut(s)	193, 531
PspPI	GGNCC	1 cut(s)	191
PsyI	GACNNNGTC	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
RseI	CAYNNNNRTG	1 cut(s)	502
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	227, 633
SatI	GCNGC	7 cut(s)	77, 99, 102, 105, 212, 284, 597
Sau3AI	GATC	1 cut(s)	508
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	536
SduI	GDGCHC	2 cut(s)	265, 363
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	264
SmoI	CTYRAG	1 cut(s)	264
Sse9I	AATT	4 cut(s)	81, 473, 601, 722
SsiI	CCGC	3 cut(s)	214, 354, 618
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	534
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	393
TasI	AATT	4 cut(s)	81, 473, 601, 722
Tru1I	TTAA	2 cut(s)	227, 633
Tru9I	TTAA	2 cut(s)	227, 633
TscAI	CASTG	3 cut(s)	319, 363, 694
TseFI	GTSAC	3 cut(s)	23, 310, 437
TseI	GCWGC	7 cut(s)	76, 98, 101, 104, 211, 283, 596
Tsp45I	GTSAC	3 cut(s)	23, 310, 437
TspDTI	ATGAA	2 cut(s)	74, 151
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	3 cut(s)	319, 363, 694
Tth111I	GACNNNGTC	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	2 cut(s)	81, 473
XceI	RCATGY	2 cut(s)	188, 413
XspI	CTAG	1 cut(s)	32
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.