Splicing factor U2AF-associated protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G16260 |
| fragaria_vesca | FvH4_6g00060 |
| malus_domestica | MD00G1017100.v1.1 MD12G1261400.v1.1 |
| prunus_persica | Prupe.6G365400_v2.0.a1 Prupe.6G365400_v2.0.a1 Prupe.6G365400_v2.0.a1 |
| pyrus_communis | pycom02g06260 pycom04g22010 pycom04g22020 pycom12g24240 |
| rosa_chinensis | RchiOBHm_Chr3g0447391 |
| rosa_laevigata | RLG00000026003 |
| rosa_multiflora | Rmu_ssc0000473.1_g000016 |
| rosa_roxburghii | Rroxscaffold_6G00425590 |
| rosa_rugosa | Rorug02G0601100 |
| rosa_samantha | Rh3AG001200 Rh3BG000900 Rh3CG000900 Rh3DG001100 |
| rosa_wichuraiana | Rw3G000060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 278 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 244 |
| AciI | CCGC | 1 cut(s) | 183 |
| AcsI | RAATTY | 1 cut(s) | 69 |
| AcyI | GRCGYC | 1 cut(s) | 279 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 57, 244 |
| AgsI | TTSAA | 1 cut(s) | 132 |
| AluBI | AGCT | 1 cut(s) | 17 |
| AluI | AGCT | 1 cut(s) | 17 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 244 |
| ApoI | RAATTY | 1 cut(s) | 69 |
| AspLEI | GCGC | 1 cut(s) | 281 |
| BanI | GGYRCC | 1 cut(s) | 278 |
| BccI | CCATC | 1 cut(s) | 206 |
| BfoI | RGCGCY | 1 cut(s) | 282 |
| BmiI | GGNNCC | 1 cut(s) | 280 |
| BmsI | GCATC | 1 cut(s) | 130 |
| BsaHI | GRCGYC | 1 cut(s) | 279 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 57, 244 |
| BseGI | GGATG | 3 cut(s) | 214, 253, 259 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 57, 244 |
| BseMII | CTCAG | 1 cut(s) | 96 |
| BshNI | GGYRCC | 1 cut(s) | 278 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 57, 244 |
| BspACI | CCGC | 1 cut(s) | 183 |
| BspCNI | CTCAG | 1 cut(s) | 95 |
| BspLI | GGNNCC | 1 cut(s) | 280 |
| BspT107I | GGYRCC | 1 cut(s) | 278 |
| BssNI | GRCGYC | 1 cut(s) | 279 |
| Bst4CI | ACNGT | 2 cut(s) | 22, 264 |
| BstACI | GRCGYC | 1 cut(s) | 279 |
| BstDEI | CTNAG | 1 cut(s) | 82 |
| BstF5I | GGATG | 3 cut(s) | 214, 253, 259 |
| BstH2I | RGCGCY | 1 cut(s) | 282 |
| BstHHI | GCGC | 1 cut(s) | 281 |
| BstNSI | RCATGY | 1 cut(s) | 40 |
| BtsCI | GGATG | 3 cut(s) | 214, 253, 259 |
| BtsIMutI | CAGTG | 1 cut(s) | 90 |
| CaiI | CAGNNNCTG | 1 cut(s) | 244 |
| CfoI | GCGC | 1 cut(s) | 281 |
| CviAII | CATG | 2 cut(s) | 37, 227 |
| CviJI | RGCY | 1 cut(s) | 17 |
| CviKI_1 | RGCY | 1 cut(s) | 17 |
| DdeI | CTNAG | 1 cut(s) | 82 |
| DinI | GGCGCC | 1 cut(s) | 280 |
| EgeI | GGCGCC | 1 cut(s) | 280 |
| EheI | GGCGCC | 1 cut(s) | 280 |
| FaeI | CATG | 2 cut(s) | 40, 230 |
| FaiI | YATR | 6 cut(s) | 38, 64, 66, 127, 155, 228 |
| FatI | CATG | 2 cut(s) | 36, 226 |
| FauNDI | CATATG | 1 cut(s) | 64 |
| FokI | GGATG | 3 cut(s) | 221, 260, 266 |
| GlaI | GCGC | 1 cut(s) | 280 |
| HaeII | RGCGCY | 1 cut(s) | 282 |
| HhaI | GCGC | 1 cut(s) | 281 |
| Hin1I | GRCGYC | 1 cut(s) | 279 |
| Hin1II | CATG | 2 cut(s) | 40, 230 |
| Hin6I | GCGC | 1 cut(s) | 279 |
| HinP1I | GCGC | 1 cut(s) | 279 |
| HincII | GTYRAC | 1 cut(s) | 223 |
| HindII | GTYRAC | 1 cut(s) | 223 |
| HinfI | GANTC | 3 cut(s) | 80, 100, 241 |
| HpaI | GTTAAC | 1 cut(s) | 223 |
| Hpy166II | GTNNAC | 2 cut(s) | 79, 223 |
| Hpy188III | TCNNGA | 2 cut(s) | 238, 245 |
| Hpy8I | GTNNAC | 2 cut(s) | 79, 223 |
| HpyCH4III | ACNGT | 2 cut(s) | 22, 264 |
| HpyCH4V | TGCA | 3 cut(s) | 153, 200, 260 |
| HpyF3I | CTNAG | 1 cut(s) | 82 |
| Hsp92I | GRCGYC | 1 cut(s) | 279 |
| Hsp92II | CATG | 2 cut(s) | 40, 230 |
| HspAI | GCGC | 1 cut(s) | 279 |
| KasI | GGCGCC | 1 cut(s) | 278 |
| KspAI | GTTAAC | 1 cut(s) | 223 |
| LpnPI | CCDG | 3 cut(s) | 60, 230, 251 |
| LweI | GCATC | 1 cut(s) | 130 |
| MboII | GAAGA | 1 cut(s) | 20 |
| MluCI | AATT | 3 cut(s) | 9, 69, 113 |
| Mly113I | GGCGCC | 1 cut(s) | 279 |
| MlyI | GAGTC | 1 cut(s) | 74 |
| MnlI | CCTC | 3 cut(s) | 82, 199, 244 |
| MseI | TTAA | 2 cut(s) | 222, 289 |
| MslI | CAYNNNNRTG | 1 cut(s) | 158 |
| NarI | GGCGCC | 1 cut(s) | 279 |
| NdeI | CATATG | 1 cut(s) | 64 |
| NlaIII | CATG | 2 cut(s) | 40, 230 |
| NlaIV | GGNNCC | 1 cut(s) | 280 |
| NspI | RCATGY | 1 cut(s) | 40 |
| PfeI | GAWTC | 2 cut(s) | 100, 241 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 244 |
| PleI | GAGTC | 1 cut(s) | 74 |
| PluTI | GGCGCC | 1 cut(s) | 282 |
| PpsI | GAGTC | 1 cut(s) | 74 |
| PspN4I | GGNNCC | 1 cut(s) | 280 |
| PstNI | CAGNNNCTG | 1 cut(s) | 244 |
| RseI | CAYNNNNRTG | 1 cut(s) | 158 |
| SaqAI | TTAA | 2 cut(s) | 222, 289 |
| SchI | GAGTC | 1 cut(s) | 74 |
| SetI | ASST | 3 cut(s) | 19, 93, 289 |
| SfaNI | GCATC | 1 cut(s) | 130 |
| SfoI | GGCGCC | 1 cut(s) | 280 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 158 |
| Sse9I | AATT | 3 cut(s) | 9, 69, 113 |
| SsiI | CCGC | 1 cut(s) | 183 |
| SspDI | GGCGCC | 1 cut(s) | 278 |
| TaaI | ACNGT | 2 cut(s) | 22, 264 |
| TasI | AATT | 3 cut(s) | 9, 69, 113 |
| TfiI | GAWTC | 2 cut(s) | 100, 241 |
| Tru1I | TTAA | 2 cut(s) | 222, 289 |
| Tru9I | TTAA | 2 cut(s) | 222, 289 |
| TscAI | CASTG | 1 cut(s) | 90 |
| TspDTI | ATGAA | 2 cut(s) | 81, 179 |
| TspRI | CASTG | 1 cut(s) | 90 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 244 |
| XapI | RAATTY | 1 cut(s) | 69 |
| XceI | RCATGY | 1 cut(s) | 40 |