Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006014

Physical Location & Seq

Genomic Coordinates Forward (+)

101607 .. 106274

Gene Structure 4668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00110.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGCTGAGCAGAGCAGCTTCTGTTTCCGTATCTGCAAACCCATCAAACCACTTGTTGTTGTTCAGCAGGAATTCTCAGTTACACAACAATCTCTCGTATGCTGCTTCCTCATCCAACTTTCCGAGCATCACACGGAACAACAACACCTCTAGAATCTCGAGGATGATCAACACTTTCACAACCCGAGCAACCGCGCAGCCTCTCCAGAATGCTGACGAGCTCATCGACTCTGTCGAGACCTTCATCTTCGACTGCGACGGAGTTATATGGAAAGGAGATAAGCTGATAGATGGCGTCCCAGAAACTCTTGATATGCTACGGTCCAAGGGCAAACGATTAGTCTTCGTTACCAACAACTCAACAAAATCTAGGAAGCAATATGGTAAAAAGTTTGAAACACTTGGTCTGAATGTCAGTGAGGAAGAAATTTTTGCTTCATCGTTTGCTGCTGCTGCCTATTTGAAGTCCATAAATTTTCCAAAAGATAAAAAGGTTTACGTGATTGGTGAGGATGGAATCTTGAAGGAGCTTGAGCTTGCTGGGTTTCAATACCTTGGTGGACCTGAAGATGGAGGGAAGAAGATAGAGCTGAAGCCTGGATTTCTGATGGAGCATGATGAGAGCGTTGGAGCTGTTGTGGTTGGGTTTGATCGATATGTCAACTACTTCAAAATTCAGTATGGGACACTCTGTATACGTGAAAACCCTGGATGTCTTTTCATAGCAACAAATCGTGATGCTGTCACTCATCTCACAGATGCTCAGGAATGGGCAGGTGGTGGTTCCATGGTTGGTGCTATTCAGGGATCTACTCAGCGTGAGCCACTGGTTGTGGGAAAGCCTTCGACATTTATGATGGACTACTTAGCAAATGAATTTGGCATACTGAAGTCACAAATTTGCATGGTCGGGGACAGATTGGATACTGATATTCTGTTTGGACAAAATGGTGGTTGCAAAACTCTTCTTGTTCTCTCAGGTGTCACTACTTTATCAGTGCTTCAAAATCCCAGCAACACCATACAACCAGATTTTTACACCAACAAAATTTCAGACTTCTTGTCTCTCAAGGCTACAACTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

362

Amino Acids

39.59

Weight (kDa)

6.15

Isoelectric Point (pI)

27.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	79 - 318	9.4e-14	haloacid dehalogenase-like hydrolase
Hydrolase_6	PF13344	81 - 183	1.9e-35	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	278 - 327	4.3e-17	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36700 AT5G36700 AT5G36700 AT5G36700 AT5G36790 AT5G36790 AT5G36790
fragaria_vesca	FvH4_6g00110 FvH4_6g00110
malus_domestica	MD04G1248400.v1.1 MD12G1262300.v1.1
prunus_persica	Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1
pyrus_communis	pycom04g21910 pycom12g24170
rosa_chinensis	RchiOBHm_Chr3g0447461
rosa_laevigata	RLG00000025996
rosa_roxburghii	Rroxscaffold_6G00425680
rosa_rugosa	Rorug02G0601900 Rorug02G0602000
rosa_samantha	Rh3AG002200 Rh3BG001700 Rh3CG002000 Rh3DG002100
rosa_wichuraiana	Rw3G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	764
Acc36I	ACCTGC	1 cut(s)	764
AccI	GTMKAC	1 cut(s)	694
AccII	CGCG	1 cut(s)	194
AciI	CCGC	1 cut(s)	192
AclWI	GGATC	1 cut(s)	814
AcsI	RAATTY	7 cut(s)	70, 426, 472, 672, 875, 897, 1047
AcuI	CTGAAG	3 cut(s)	585, 611, 908
AcyI	GRCGYC	1 cut(s)	294
AfiI	CCNNNNNNNGG	1 cut(s)	569
AgsI	TTSAA	6 cut(s)	395, 463, 523, 548, 670, 1004
AhdI	GACNNNNNGTC	1 cut(s)	1060
AjnI	CCWGG	2 cut(s)	595, 706
AluBI	AGCT	7 cut(s)	17, 220, 283, 529, 535, 589, 632
AluI	AGCT	7 cut(s)	17, 220, 283, 529, 535, 589, 632
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	2 cut(s)	230, 1068
AlwI	GGATC	1 cut(s)	814
AlwNI	CAGNNNCTG	1 cut(s)	20
Ama87I	CYCGRG	2 cut(s)	157, 183
ApeKI	GCWGC	6 cut(s)	14, 101, 196, 446, 449, 452
ApoI	RAATTY	7 cut(s)	70, 426, 472, 672, 875, 897, 1047
ArsI	GACNNNNNNTTYG	2 cut(s)	324, 356
Asp700I	GAANNNNTTC	1 cut(s)	841
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	2 cut(s)	321, 560
AsuHPI	GGTGA	1 cut(s)	518
AvaI	CYCGRG	2 cut(s)	157, 183
AvaII	GGWCC	2 cut(s)	321, 560
BanII	GRGCYC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	6 cut(s)	26, 88, 208, 433, 436, 439
BccI	CCATC	6 cut(s)	49, 284, 506, 563, 601, 850
BciT130I	CCWGG	2 cut(s)	597, 708
BciVI	GTATCC	1 cut(s)	916
BclI	TGATCA	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	230, 1068
BfaI	CTAG	2 cut(s)	150, 369
BfuAI	ACCTGC	1 cut(s)	764
BfuI	GTATCC	1 cut(s)	916
BisI	GCNGC	6 cut(s)	15, 102, 197, 447, 450, 453
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	6 cut(s)	16, 103, 198, 448, 451, 454
Bme1390I	CCNGG	2 cut(s)	597, 708
Bme18I	GGWCC	2 cut(s)	321, 560
BmeRI	GACNNNNNGTC	1 cut(s)	1060
BmeT110I	CYCGRG	2 cut(s)	157, 183
BmgT120I	GGNCC	2 cut(s)	321, 560
BmiI	GGNNCC	1 cut(s)	784
BmrFI	CCNGG	2 cut(s)	597, 708
BmsI	GCATC	3 cut(s)	135, 727, 748
BpiI	GAAGAC	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	762
Bpu1102I	GCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	2 cut(s)	551, 1052
Bsa29I	ATCGAT	1 cut(s)	652
BsaAI	YACGTR	2 cut(s)	499, 698
BsaHI	GRCGYC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	4 cut(s)	324, 553, 706, 786
BsaXI	ACNNNNNCTCC	2 cut(s)	621, 651
Bsc4I	CCNNNNNNNGG	1 cut(s)	569
Bse1I	ACTGG	1 cut(s)	831
BseBI	CCWGG	2 cut(s)	597, 708
BseCI	ATCGAT	1 cut(s)	652
BseDI	CCNNGG	4 cut(s)	324, 553, 706, 786
BseGI	GGATG	4 cut(s)	110, 168, 517, 716
BseLI	CCNNNNNNNGG	1 cut(s)	569
BseMII	CTCAG	4 cut(s)	89, 776, 827, 990
BseNI	ACTGG	1 cut(s)	831
BseXI	GCAGC	6 cut(s)	26, 88, 208, 433, 436, 439
BseYI	CCCAGC	2 cut(s)	539, 1010
Bsh1236I	CGCG	1 cut(s)	194
BshVI	ATCGAT	1 cut(s)	652
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	2 cut(s)	157, 183
BslFI	GGGAC	3 cut(s)	281, 697, 926
BslI	CCNNNNNNNGG	1 cut(s)	569
BsmAI	GTCTC	2 cut(s)	230, 1068
BsmFI	GGGAC	3 cut(s)	281, 697, 926
BsmI	GAATGC	1 cut(s)	214
Bso31I	GGTCTC	1 cut(s)	230
BsoBI	CYCGRG	2 cut(s)	157, 183
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	165, 649, 806
Bsp1720I	GCTNAGC	1 cut(s)	5
Bsp19I	CCATGG	1 cut(s)	786
BspACI	CCGC	1 cut(s)	192
BspCNI	CTCAG	4 cut(s)	88, 775, 826, 989
BspDI	ATCGAT	1 cut(s)	652
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	784
BspMI	ACCTGC	1 cut(s)	764
BspPI	GGATC	1 cut(s)	814
BspTNI	GGTCTC	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	831
BssECI	CCNNGG	4 cut(s)	324, 553, 706, 786
BssMI	GATC	3 cut(s)	165, 649, 806
BssNAI	GTATAC	1 cut(s)	695
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	3 cut(s)	324, 553, 786
Bst1107I	GTATAC	1 cut(s)	695
Bst2UI	CCWGG	2 cut(s)	597, 708
Bst4CI	ACNGT	2 cut(s)	321, 1081
Bst6I	CTCTTC	1 cut(s)	969
BstACI	GRCGYC	1 cut(s)	294
BstBAI	YACGTR	2 cut(s)	499, 698
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	6 cut(s)	5, 75, 762, 813, 865, 976
BstDSI	CCRYGG	1 cut(s)	786
BstF5I	GGATG	4 cut(s)	110, 168, 517, 716
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	3 cut(s)	168, 652, 809
BstMAI	GTCTC	2 cut(s)	230, 1068
BstMBI	GATC	3 cut(s)	165, 649, 806
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	2 cut(s)	597, 708
BstSCI	CCNGG	2 cut(s)	595, 706
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	6 cut(s)	26, 88, 208, 433, 436, 439
BstV2I	GAAGAC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	806
BstYI	RGATCY	1 cut(s)	806
BstZ17I	GTATAC	1 cut(s)	695
Bsu15I	ATCGAT	1 cut(s)	652
BsuI	GTATCC	1 cut(s)	916
BsuTUI	ATCGAT	1 cut(s)	652
BtgI	CCRYGG	1 cut(s)	786
BtsCI	GGATG	4 cut(s)	110, 168, 517, 716
BtsIMutI	CAGTG	3 cut(s)	421, 824, 1002
BveI	ACCTGC	1 cut(s)	764
Cac8I	GCNNGC	1 cut(s)	537
CaiI	CAGNNNCTG	1 cut(s)	20
CfoI	GCGC	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	321, 560
ClaI	ATCGAT	1 cut(s)	652
CseI	GACGC	1 cut(s)	283
CviAII	CATG	3 cut(s)	614, 787, 904
DdeI	CTNAG	6 cut(s)	5, 75, 762, 813, 865, 976
DpnI	GATC	3 cut(s)	167, 651, 808
DpnII	GATC	3 cut(s)	165, 649, 806
DriI	GACNNNNNGTC	1 cut(s)	1060
Eam1104I	CTCTTC	1 cut(s)	969
Eam1105I	GACNNNNNGTC	1 cut(s)	1060
EarI	CTCTTC	1 cut(s)	969
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	3 cut(s)	324, 553, 786
Eco24I	GRGCYC	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	2 cut(s)	321, 560
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	3 cut(s)	585, 611, 908
Eco88I	CYCGRG	2 cut(s)	157, 183
EcoICRI	GAGCTC	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	2 cut(s)	595, 706
EcoT14I	CCWWGG	3 cut(s)	324, 553, 786
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	3 cut(s)	324, 553, 786
FaeI	CATG	3 cut(s)	617, 790, 907
FaqI	GGGAC	3 cut(s)	281, 697, 926
FatI	CATG	3 cut(s)	613, 786, 903
FbaI	TGATCA	1 cut(s)	165
FblI	GTMKAC	1 cut(s)	694
Fnu4HI	GCNGC	6 cut(s)	15, 102, 197, 447, 450, 453
FokI	GGATG	4 cut(s)	97, 175, 524, 723
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	6 cut(s)	15, 102, 197, 447, 450, 453
FspBI	CTAG	2 cut(s)	150, 369
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	6 cut(s)	15, 102, 197, 447, 450, 453
GsaI	CCCAGC	2 cut(s)	543, 1014
GsuI	CTGGAG	1 cut(s)	188
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	617, 790, 907
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HinfI	GANTC	3 cut(s)	153, 227, 516
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	4 cut(s)	496, 560, 661, 695
Hpy188I	TCNGA	4 cut(s)	123, 408, 606, 1054
Hpy188III	TCNNGA	8 cut(s)	150, 157, 205, 235, 308, 520, 734, 764
Hpy8I	GTNNAC	4 cut(s)	496, 560, 661, 695
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	3 cut(s)	250, 517, 852
HpyCH4III	ACNGT	2 cut(s)	321, 1081
HpyCH4IV	ACGT	2 cut(s)	498, 697
HpyCH4V	TGCA	3 cut(s)	35, 903, 957
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	6 cut(s)	5, 75, 762, 813, 865, 976
HpySE526I	ACGT	2 cut(s)	498, 697
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	617, 790, 907
HspAI	GCGC	1 cut(s)	194
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	3 cut(s)	165, 649, 806
LmnI	GCTCC	3 cut(s)	526, 610, 629
Lsp1109I	GCAGC	6 cut(s)	26, 88, 208, 433, 436, 439
LweI	GCATC	3 cut(s)	135, 727, 748
MaeI	CTAG	2 cut(s)	150, 369
MaeII	ACGT	2 cut(s)	498, 697
MaeIII	GTNAC	5 cut(s)	78, 346, 742, 891, 982
MalI	GATC	3 cut(s)	167, 651, 808
MboI	GATC	3 cut(s)	165, 649, 806
MboII	GAAGA	7 cut(s)	238, 334, 434, 578, 589, 592, 956
MflI	RGATCY	1 cut(s)	806
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	7 cut(s)	70, 426, 472, 672, 875, 897, 1047
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	2 cut(s)	138, 607
MnlI	CCTC	7 cut(s)	118, 153, 157, 210, 412, 502, 566
MroXI	GAANNNNTTC	1 cut(s)	841
MspR9I	CCNGG	2 cut(s)	597, 708
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	2 cut(s)	597, 708
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	452
NcoI	CCATGG	1 cut(s)	786
NdeII	GATC	3 cut(s)	165, 649, 806
NlaIII	CATG	3 cut(s)	617, 790, 907
NlaIV	GGNNCC	1 cut(s)	784
NmuCI	GTSAC	3 cut(s)	742, 891, 982
PaeR7I	CTCGAG	1 cut(s)	157
PaqCI	CACCTGC	1 cut(s)	764
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 231
PctI	GAATGC	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	841
PfeI	GAWTC	2 cut(s)	153, 516
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	6 cut(s)	16, 103, 198, 448, 451, 454
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
Ppu21I	YACGTR	2 cut(s)	499, 698
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	595, 706
PspFI	CCCAGC	2 cut(s)	539, 1010
PspGI	CCWGG	2 cut(s)	595, 706
PspN4I	GGNNCC	1 cut(s)	784
PspPI	GGNCC	2 cut(s)	321, 560
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	806
PsyI	GACNNNGTC	1 cut(s)	230
SacI	GAGCTC	1 cut(s)	222
SatI	GCNGC	6 cut(s)	15, 102, 197, 447, 450, 453
Sau3AI	GATC	3 cut(s)	165, 649, 806
Sau96I	GGNCC	2 cut(s)	321, 560
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	597, 708
SduI	GDGCHC	1 cut(s)	222
SfaNI	GCATC	3 cut(s)	135, 727, 748
Sfr274I	CTCGAG	1 cut(s)	157
SinI	GGWCC	2 cut(s)	321, 560
SlaI	CTCGAG	1 cut(s)	157
SmlI	CTYRAG	3 cut(s)	157, 530, 1067
SmoI	CTYRAG	3 cut(s)	157, 530, 1067
Sse9I	AATT	7 cut(s)	70, 426, 472, 672, 875, 897, 1047
SsiI	CCGC	1 cut(s)	192
SspMI	CTAG	2 cut(s)	150, 369
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	595, 706
StyI	CCWWGG	3 cut(s)	324, 553, 786
TaaI	ACNGT	2 cut(s)	321, 1081
TaiI	ACGT	2 cut(s)	501, 700
TaqI	TCGA	6 cut(s)	158, 225, 234, 249, 652, 845
TasI	AATT	7 cut(s)	70, 426, 472, 672, 875, 897, 1047
TfiI	GAWTC	2 cut(s)	153, 516
TscAI	CASTG	3 cut(s)	421, 831, 1002
TseFI	GTSAC	3 cut(s)	742, 891, 982
TseI	GCWGC	6 cut(s)	14, 101, 196, 446, 449, 452
Tsp45I	GTSAC	3 cut(s)	742, 891, 982
TspDTI	ATGAA	4 cut(s)	232, 426, 709, 888
TspGWI	ACGGA	3 cut(s)	16, 148, 273
TspRI	CASTG	3 cut(s)	421, 831, 1002
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	2 cut(s)	321, 560
XapI	RAATTY	7 cut(s)	70, 426, 472, 672, 875, 897, 1047
XbaI	TCTAGA	1 cut(s)	149
XhoI	CTCGAG	1 cut(s)	157
XmiI	GTMKAC	1 cut(s)	694
XmnI	GAANNNNTTC	1 cut(s)	841
XspI	CTAG	2 cut(s)	150, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.