Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006014

Physical Location & Seq

Genomic Coordinates Forward (+)

72081342 .. 72087214

Gene Structure 5873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0602000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3759 bp

ATGGAAGACAAAATGGAGAGCAAGAAGAAAGCTGGCTCTTCTATACGCTCCGTTTTCATGCACGCTGATGGTGTTGATAAACTCTTGATGGCGTTGGGGCTGTTCGGAAGCATCGGAGACGGCTGCACAACGCCTATGGTCTTGTTGATCACTAGCCGCTTGATGAACAATGTCGGCGGCGCCTCATCCAACGCTCAAGATGCTTTCTTGCATAACATCAATAAGAATGCAGTGGCGCTATTGTACTTGGCTTCTGCATCATTTGTTTGTTGCTTCCTAGAGGGATATTCTTGGACAAGAACTGGTGAGAGACAAGCAGCTAGAATGAGAGTAAGATATTTGAAAGCAGTGTTAAGACAAGATGTGGGCTACTTTGATTTGCATGTCACAAGCACCTCAGAGGTTATCACCAGCGTCTCTAGTGATAGCCTTGTCATTCAAGACGTCCTTAGTGAAAAGGTGCCAAACTTTGTAATGAACTGCTCTATGTTCCTTGGGAGCTATGTTGCGGCGTTCATAATGCTGTGGAGGCTAGCCATTGTTGGGTTTCCTTTTGTGGTGCTTCTGGTGATTCCGGGTTTGATATACGGACGGACTTTGATGGGACTGGCTAGGCAGATTAGAGATGAATACACCAAGGCTGGCACAATAGCAGAACAGGCACTGTCATCAATTAGAACCGTGTATGCATTTGTTGGAGAAAAGAAGACTATAACAGAGTTCTCTGCAGCTCTACAAGGCTCAGTGAAGTTGGGGTTGAGTCAGGGCCTGGCAAAAGGCTTGGCCATTGGAAGCAACGGTGTCGTTTTCGCGATTTGGTCGTTCATGTCCTACTATGGCAGCAGAATGGTCATGTACCATGGCGCTAAGGGAGGCACTGTTTTCGCTGTTGGTGCTGCAATAGCTGTTGGTGGATTGGCATTGGGCGCAGGCTTATCAAACTTGAAGTACTTCTCAGAAGCGTGTTCAGCCGCTGAACGAATAATGGAGGTGATTCGGAGAGTCCCCAAGATCGATTCAGACAACATGGAAGGAGAAATACTAGAGAACGTTTTAGGGGAAGTTGAATTCAAGCACGTAGAATTCGCCTACCCGTCAAGGCCAGAAAGCATTATCTTCAAAGACTTCAACTTAACGGTTCCAGCTGGGAAAACAGTGGCATTGGTGGGTGGTAGTGGCTCGGGAAAATCGACAGTGATTTCGCTGTTGCAGAGATTTTATGATCCACTCGGGGGGGAGATTCTCATTGATGGGGTGGCCATAAACAAGTGTCAGCTCAAGTGGTTGAGGTCACAGATGGGACTGGTGAGCCAAGAGCCTGCTCTGTTTGCAACCAGCATAAAAGAGAACATACTTTTTGGGAAAGAAGATGCTACCATTGAAGAGGTTATTGAGGCTGGTAAAGCTTCTAATGCTCACAATTTCATCTCTCAGTTGCCTCTGGGATATGACACACAGGTTGGCGAGAGAGGTGTTCAAATGTCGGGAGGGCAGAAGCAAAGAATAGCCATTGCCCGAGCAATCATCAAGAAACCACGCATCCTTCTTCTAGATGAAGCCACGAGCGCATTGGACTCCGAATCGGAGCGTGTAGTTCAAGAAGCTCTTGACAAAGCAGCTGTCGGACGTACGACGATAATCATCGCCCACCGCCTCTCTACCATCCGAAACGCCGACGTCATTGCTGTCGTTCAAAACGGGCAGGTCATGGAGACAGGCTCACACAACGAGCTATTCCAACGTGAAAATGGTCTCTATACCTCGCTTGTCCGCTTACAACAAACAGAGAAGCAAAGAGGACCAGAAGAGCAAGGACATTACGCATCTTCATCTATATCAAACATGGACATTCACAACACAAGCAGTCGTAGGCTTTCTATGGTCAGCCGCTCAAGTTCTGCTAACTCATTTGCGCAAGGTCGAGCTTCATCAGTGGTTGCTGGGGAAGATGAGATCGTAGAAGGGCAGAAGCTGCCTGTCCCATCTTTTCGGAGATTGATAGCTTTGAACCTTCCGGAGTGGAAACAAGCGCTTTTGGGGTGCTTCAGTGCGGTACTTTTTGGTGCAGTTCAGCCAGTATACGCATTTGCTATGGGGTCAATGGTGTCGGTTTATTTCTTGACAGATCACGATGAGATCAAGGAGAAGACGAGGATTTATTCACTTTGCTTTCTCGGGTTGGCTATTTTCTCTTTGCTGGTTAACATTTGCCAGCATTACAACTTTGCCTACATGGGAGAGTACTTGACTAAGAGAGTTAGAGAGAGGATGCTTTCCAAGATTCTTACATTCGAAGTTGGGTGGTTTGATCAAGATGAGAATTCTAGTGGTGCCATTTGCTCTAGACTCGCCAAAGATGCCAATGTGGTGAGATCTTTAGTGGGTGATCGGATGGCTCTACTTGTTCAAACTTTCTCAGCTGTGACCGTAGCCTGCACAATGGGTTTGGTCATTGCATGGAGACTTGCCTCAGTTATGATAGCAGTACAACCCATTATCATTGTGAGCTTCTACACCAGGCGTGTCCTGCTCAAAAGTATGTCCAGGAAAGCCATCAAAGCTCAAGATGAAAGCAGCAAGCTAGCTGCAGAAGCAGTCTCCAACCTCAGAACCATCACTGCCTTCTCATCTCAGGACCGTCTGTTGAAAATGCTCGAAAAGGCCCAAGAAGGCCCACGTAAGGAAAGCATCCGACAATCATGGTTTGCGGGGATTGGGCTTGGTTGTTCTCAAAGCCTTACCACTATCACCTGGGCTTTTGACTTTTGGTACGGAGGCAAGCTCGTTGCCAAGGGCTACGTCACAGCGAAAGCTCTTTTTGAGACTTTCATGATATTGGTGAGCACCGGCCGGGTTATTGCCGATGCCGGAAGCATGACTTCAGATCTTGCGAAAGGGTCGGATGCTGTTGCGTCCGTATTTGCAGTGTTGGACCGGTACACAAAAATAGAACCCGAAGACCCGGAAGGTTGCGAGCCCAAAAGAATAACCGGTCACATAGAACTTCGTAACGTACATTTTGCATACCCCGCTAGGCCTGATGTGATGGTTTTCAAAGGATTCTCAATCAAAATCGAAGCTGGAAAATCAACTGCGTTGGTGGGACAAAGCGGGTCTGGAAAGTCAACAATTATTGGATTAATCGAAAGATTTTATGATCCATTGAAAGGAGAAGTGATAATTGACGGTCGAGACACGAAATCGTATCACCTCAGGTCATTAAGGAAACATATAGCACTTGTTAGCCAAGAGCCAACGCTATTTTTAGGTACCATAAGAGAGAACATCATATATGGCGTGTCGGATAAGATTGACGAATTGGAGATAATTGAAGCAGCGAAGGCAGCCAACGCTCATGATTTCATTTCAAGCCTCAAGGAGGGATATGACACTTCATGTGGAGACAGAGGAGTGCAACTGTCTGGGGGACAGAAGCAACGCATTGCTATAGCGAGAGCTATATTGAGAAACCCAGTGGTGTTACTGTTAGATGAGGCGACCAGTGCGCTTGATAGTCATTCGGAGAAGGTGGTGCAAGATGCGCTAGAGCGGGTGATGGTGGGGAGGACTAGTGTGGTGGTGGCGCACAGGTTGAGTACCATACAACACTGTGATCTTATCACAGTACTTGATAAGGGGAGGGTAGTGGAGAAAGGGACTCACTCATCCCTTTTGGCCAAAGGGCCTAAAGGTTCTTACTACTCATTGGTTAGCTTGCAAAGGACGCCATCTGCATCAGATCTTACTAAATTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

1252

Amino Acids

136.52

Weight (kDa)

8.85

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	31 - 297	2.6e-47	ABC transporter transmembrane region
ABC_tran	PF00005	374 - 522	1.4e-33	ABC transporter
ABC_membrane	PF00664	678 - 947	7.4e-50	ABC transporter transmembrane region
ABC_tran	PF00005	1019 - 1168	3.9e-32	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36700 AT5G36700 AT5G36700 AT5G36700 AT5G36790 AT5G36790 AT5G36790
fragaria_vesca	FvH4_6g00110 FvH4_6g00110
malus_domestica	MD04G1248400.v1.1 MD12G1262300.v1.1
prunus_persica	Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1
pyrus_communis	pycom04g21910 pycom12g24170
rosa_chinensis	RchiOBHm_Chr3g0447461
rosa_laevigata	RLG00000025996
rosa_roxburghii	Rroxscaffold_6G00425680
rosa_rugosa	Rorug02G0601900 Rorug02G0602000
rosa_samantha	Rh3AG002200 Rh3BG001700 Rh3CG002000 Rh3DG002100
rosa_wichuraiana	Rw3G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	447, 1680
Acc16I	TGCGCA	1 cut(s)	1914
Acc36I	ACCTGC	1 cut(s)	1693
Acc65I	GGTACC	1 cut(s)	3269
AccB1I	GGYRCC	4 cut(s)	179, 460, 2330, 3269
AccBSI	CCGCTC	2 cut(s)	1890, 3550
AccI	GTMKAC	1 cut(s)	2079
AccII	CGCG	1 cut(s)	812
AccIII	TCCGGA	1 cut(s)	2014
AclI	AACGTT	1 cut(s)	1050
AclWI	GGATC	2 cut(s)	1217, 3152
AcoI	YGGCCR	4 cut(s)	783, 1257, 2848, 3675
AcsI	RAATTY	3 cut(s)	1067, 1082, 2320
AcuI	CTGAAG	2 cut(s)	2029, 2865
AcyI	GRCGYC	4 cut(s)	180, 444, 1677, 3725
AfeI	AGCGCT	1 cut(s)	2031
AfiI	CCNNNNNNNGG	5 cut(s)	543, 1232, 2680, 3167, 3379
AgeI	ACCGGT	2 cut(s)	2934, 2990
AhlI	ACTAGT	1 cut(s)	3569
AjnI	CCWGG	4 cut(s)	768, 2516, 2543, 2750
Alw21I	GWGCWC	1 cut(s)	2846
AlwI	GGATC	2 cut(s)	1217, 3152
AlwNI	CAGNNNCTG	4 cut(s)	664, 769, 974, 1972
Ama87I	CYCGRG	4 cut(s)	1180, 1229, 1515, 2174
Aor13HI	TCCGGA	1 cut(s)	2014
Aor51HI	AGCGCT	1 cut(s)	2031
ApoI	RAATTY	3 cut(s)	1067, 1082, 2320
ArsI	GACNNNNNNTTYG	4 cut(s)	1183, 1215, 1605, 1637
AseI	ATTAAT	1 cut(s)	3140
AsiGI	ACCGGT	2 cut(s)	2934, 2990
Asp700I	GAANNNNTTC	1 cut(s)	950
Asp718I	GGTACC	1 cut(s)	3269
AspS9I	GGNCC	7 cut(s)	766, 1799, 2635, 2662, 2672, 2932, 3683
AsuC2I	CCSGG	3 cut(s)	576, 2852, 2963
AsuII	TTCGAA	1 cut(s)	2292
AsuNHI	GCTAGC	2 cut(s)	532, 2581
AvaI	CYCGRG	4 cut(s)	1180, 1229, 1515, 2174
AvaII	GGWCC	3 cut(s)	1799, 2635, 2932
AxyI	CCTNAGG	1 cut(s)	3212
BalI	TGGCCA	3 cut(s)	785, 1259, 3677
BanI	GGYRCC	4 cut(s)	179, 460, 2330, 3269
BanII	GRGCYC	1 cut(s)	2979
BarI	GAAGNNNNNNTAC	2 cut(s)	1023, 1055
BauI	CACGAG	1 cut(s)	1561
BbsI	GAAGAC	4 cut(s)	12, 713, 2153, 2964
Bbv12I	GWGCWC	1 cut(s)	2846
BceAI	ACGGC	1 cut(s)	136
BcgI	CGANNNNNNTGC	6 cut(s)	784, 818, 865, 899, 1664, 1698
BciT130I	CCWGG	4 cut(s)	770, 2518, 2545, 2752
BclI	TGATCA	2 cut(s)	147, 2308
BcnI	CCSGG	3 cut(s)	576, 2852, 2963
BcuI	ACTAGT	1 cut(s)	3569
BfmI	CTRYAG	3 cut(s)	726, 2586, 3447
BfoI	RGCGCY	4 cut(s)	183, 239, 867, 2033
BfuAI	ACCTGC	1 cut(s)	1693
BglII	AGATCT	3 cut(s)	2372, 2884, 3739
BmcAI	AGTACT	3 cut(s)	950, 2243, 3627
Bme1390I	CCNGG	7 cut(s)	576, 770, 2518, 2545, 2752, 2852, 2963
Bme18I	GGWCC	3 cut(s)	1799, 2635, 2932
BmeT110I	CYCGRG	4 cut(s)	1180, 1229, 1515, 2174
BmgT120I	GGNCC	7 cut(s)	766, 1799, 2635, 2662, 2672, 2932, 3683
BmiI	GGNNCC	5 cut(s)	181, 462, 1140, 2332, 3271
BmrFI	CCNGG	7 cut(s)	576, 770, 2518, 2545, 2752, 2852, 2963
BmrI	ACTGGG	1 cut(s)	3467
BmtI	GCTAGC	2 cut(s)	536, 2585
BmuI	ACTGGG	1 cut(s)	3467
BpiI	GAAGAC	4 cut(s)	12, 713, 2153, 2964
BplI	GAGNNNNNCTC	4 cut(s)	1703, 1735, 2766, 2798
Bpu10I	CCTNAGC	1 cut(s)	867
Bpu14I	TTCGAA	1 cut(s)	2292
BpuEI	CTTGAG	5 cut(s)	180, 1262, 1876, 2547, 3359
BpuMI	CCSGG	3 cut(s)	576, 2852, 2963
Bsa29I	ATCGAT	1 cut(s)	1014
BsaAI	YACGTR	2 cut(s)	1078, 2678
BsaBI	GATNNNNATC	1 cut(s)	1640
BsaHI	GRCGYC	4 cut(s)	180, 444, 1677, 3725
BsaI	GGTCTC	1 cut(s)	1757
BsaJI	CCNNGG	5 cut(s)	493, 636, 859, 2751, 2790
BsaWI	WCCGGW	3 cut(s)	2014, 2934, 2990
BsaXI	ACNNNNNCTCC	4 cut(s)	864, 894, 3556, 3586
Bsc4I	CCNNNNNNNGG	5 cut(s)	543, 1232, 2680, 3167, 3379
Bse118I	RCCGGY	3 cut(s)	2846, 2934, 2990
Bse1I	ACTGG	6 cut(s)	307, 612, 1308, 2075, 3473, 3501
Bse21I	CCTNAGG	1 cut(s)	3212
Bse3DI	GCAATG	4 cut(s)	1509, 1680, 2451, 3441
Bse8I	GATNNNNATC	1 cut(s)	1640
BseAI	TCCGGA	1 cut(s)	2014
BseBI	CCWGG	4 cut(s)	770, 2518, 2545, 2752
BseCI	ATCGAT	1 cut(s)	1014
BseDI	CCNNGG	5 cut(s)	493, 636, 859, 2751, 2790
BseGI	GGATG	8 cut(s)	185, 1539, 1662, 2274, 2397, 2688, 2908, 3665
BseJI	GATNNNNATC	1 cut(s)	1640
BseLI	CCNNNNNNNGG	5 cut(s)	543, 1232, 2680, 3167, 3379
BseMI	GCAATG	4 cut(s)	1509, 1680, 2451, 3441
BseMII	CTCAG	9 cut(s)	411, 756, 969, 1445, 2430, 2484, 2620, 2645, 3226
BseNI	ACTGG	6 cut(s)	307, 612, 1308, 2075, 3473, 3501
BseRI	GAGGAG	1 cut(s)	3423
BseX3I	CGGCCG	1 cut(s)	2848
BseYI	CCCAGC	2 cut(s)	1145, 1940
BsgI	GTGCAG	3 cut(s)	109, 2085, 2419
Bsh1236I	CGCG	1 cut(s)	812
Bsh1285I	CGRYCG	2 cut(s)	2851, 3190
BshNI	GGYRCC	4 cut(s)	179, 460, 2330, 3269
BshTI	ACCGGT	2 cut(s)	2934, 2990
BshVI	ATCGAT	1 cut(s)	1014
BsiEI	CGRYCG	2 cut(s)	2851, 3190
BsiHKAI	GWGCWC	1 cut(s)	2846
BsiHKCI	CYCGRG	4 cut(s)	1180, 1229, 1515, 2174
BsiSI	CCGG	8 cut(s)	575, 2015, 2847, 2851, 2868, 2935, 2963, 2991
BsiWI	CGTACG	1 cut(s)	1628
BslFI	GGGAC	7 cut(s)	618, 989, 1314, 1964, 3117, 3441, 3670
BslI	CCNNNNNNNGG	5 cut(s)	543, 1232, 2680, 3167, 3379
BsmBI	CGTCTC	2 cut(s)	111, 421
BsmFI	GGGAC	7 cut(s)	618, 989, 1314, 1964, 3117, 3441, 3670
BsmI	GAATGC	1 cut(s)	232
Bso31I	GGTCTC	1 cut(s)	1757
BsoBI	CYCGRG	4 cut(s)	1180, 1229, 1515, 2174
Bsp119I	TTCGAA	1 cut(s)	2292
Bsp1286I	GDGCHC	2 cut(s)	2846, 2979
Bsp13I	TCCGGA	1 cut(s)	2014
Bsp19I	CCATGG	1 cut(s)	859
Bsp68I	TCGCGA	1 cut(s)	812
BspCNI	CTCAG	9 cut(s)	410, 755, 968, 1444, 2429, 2483, 2619, 2644, 3225
BspDI	ATCGAT	1 cut(s)	1014
BspEI	TCCGGA	1 cut(s)	2014
BspFNI	CGCG	1 cut(s)	812
BspHI	TCATGA	2 cut(s)	2829, 3355
BspLI	GGNNCC	5 cut(s)	181, 462, 1140, 2332, 3271
BspMAI	CTGCAG	2 cut(s)	730, 2590
BspMI	ACCTGC	1 cut(s)	1693
BspOI	GCTAGC	2 cut(s)	536, 2585
BspPI	GGATC	2 cut(s)	1217, 3152
BspQI	GCTCTTC	2 cut(s)	43, 1800
BspT104I	TTCGAA	1 cut(s)	2292
BspT107I	GGYRCC	4 cut(s)	179, 460, 2330, 3269
BspTNI	GGTCTC	1 cut(s)	1757
BsrBI	CCGCTC	2 cut(s)	1890, 3550
BsrDI	GCAATG	4 cut(s)	1509, 1680, 2451, 3441
BsrFI	RCCGGY	3 cut(s)	2846, 2934, 2990
BsrI	ACTGG	6 cut(s)	307, 612, 1308, 2075, 3473, 3501
BssAI	RCCGGY	3 cut(s)	2846, 2934, 2990
BssECI	CCNNGG	5 cut(s)	493, 636, 859, 2751, 2790
BssNAI	GTATAC	1 cut(s)	2080
BssNI	GRCGYC	4 cut(s)	180, 444, 1677, 3725
BssSI	CACGAG	1 cut(s)	1561
BssT1I	CCWWGG	4 cut(s)	493, 636, 859, 2790
Bst1107I	GTATAC	1 cut(s)	2080
Bst2BI	CACGAG	1 cut(s)	1561
Bst2UI	CCWGG	4 cut(s)	770, 2518, 2545, 2752
Bst6I	CTCTTC	3 cut(s)	43, 1377, 1800
BstACI	GRCGYC	4 cut(s)	180, 444, 1677, 3725
BstAPI	GCANNNNNTGC	1 cut(s)	1972
BstBAI	YACGTR	2 cut(s)	1078, 2678
BstBI	TTCGAA	1 cut(s)	2292
BstDSI	CCRYGG	1 cut(s)	859
BstENI	CCTNNNNNAGG	1 cut(s)	3377
BstF5I	GGATG	8 cut(s)	185, 1539, 1662, 2274, 2397, 2688, 2908, 3665
BstFNI	CGCG	1 cut(s)	812
BstH2I	RGCGCY	4 cut(s)	183, 239, 867, 2033
BstMCI	CGRYCG	2 cut(s)	2851, 3190
BstNI	CCWGG	4 cut(s)	770, 2518, 2545, 2752
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	7 cut(s)	574, 768, 2516, 2543, 2750, 2850, 2961
BstSFI	CTRYAG	3 cut(s)	726, 2586, 3447
BstUI	CGCG	1 cut(s)	812
BstV2I	GAAGAC	4 cut(s)	12, 713, 2153, 2964
BstX2I	RGATCY	3 cut(s)	2372, 2884, 3739
BstYI	RGATCY	3 cut(s)	2372, 2884, 3739
BstZ17I	GTATAC	1 cut(s)	2080
BstZI	CGGCCG	1 cut(s)	2848
Bsu15I	ATCGAT	1 cut(s)	1014
Bsu36I	CCTNAGG	1 cut(s)	3212
BsuTUI	ATCGAT	1 cut(s)	1014
BtgI	CCRYGG	1 cut(s)	859
BtgZI	GCGATG	1 cut(s)	1627
BtsCI	GGATG	8 cut(s)	185, 1539, 1662, 2274, 2397, 2688, 2908, 3665
BtsI	GCAGTG	4 cut(s)	237, 354, 2616, 2931
BtuMI	TCGCGA	1 cut(s)	812
BveI	ACCTGC	1 cut(s)	1693
CaiI	CAGNNNCTG	4 cut(s)	664, 769, 974, 1972
CciI	TCATGA	2 cut(s)	2829, 3355
Cfr10I	RCCGGY	3 cut(s)	2846, 2934, 2990
Cfr13I	GGNCC	7 cut(s)	766, 1799, 2635, 2662, 2672, 2932, 3683
ClaI	ATCGAT	1 cut(s)	1014
CseI	GACGC	3 cut(s)	403, 2901, 3733
CspAI	ACCGGT	2 cut(s)	2934, 2990
DinI	GGCGCC	1 cut(s)	181
EaeI	YGGCCR	4 cut(s)	783, 1257, 2848, 3675
EagI	CGGCCG	1 cut(s)	2848
Eam1104I	CTCTTC	3 cut(s)	43, 1377, 1800
EarI	CTCTTC	3 cut(s)	43, 1377, 1800
EclXI	CGGCCG	1 cut(s)	2848
Eco130I	CCWWGG	4 cut(s)	493, 636, 859, 2790
Eco147I	AGGCCT	1 cut(s)	3037
Eco24I	GRGCYC	1 cut(s)	2979
Eco31I	GGTCTC	1 cut(s)	1757
Eco47I	GGWCC	3 cut(s)	1799, 2635, 2932
Eco47III	AGCGCT	1 cut(s)	2031
Eco52I	CGGCCG	1 cut(s)	2848
Eco57I	CTGAAG	2 cut(s)	2029, 2865
Eco81I	CCTNAGG	1 cut(s)	3212
Eco88I	CYCGRG	4 cut(s)	1180, 1229, 1515, 2174
EcoNI	CCTNNNNNAGG	1 cut(s)	3377
EcoO109I	RGGNCCY	2 cut(s)	766, 3683
EcoRI	GAATTC	3 cut(s)	1067, 1082, 2320
EcoRII	CCWGG	4 cut(s)	768, 2516, 2543, 2750
EcoT14I	CCWWGG	4 cut(s)	493, 636, 859, 2790
EcoT22I	ATGCAT	1 cut(s)	691
EcoT38I	GRGCYC	1 cut(s)	2979
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
ErhI	CCWWGG	4 cut(s)	493, 636, 859, 2790
Esp3I	CGTCTC	2 cut(s)	111, 421
FalI	AAGNNNNNCTT	6 cut(s)	432, 464, 1590, 1622, 2863, 2895
FaqI	GGGAC	7 cut(s)	618, 989, 1314, 1964, 3117, 3441, 3670
FauI	CCCGC	4 cut(s)	2701, 3037, 3104, 3543
FbaI	TGATCA	2 cut(s)	147, 2308
FblI	GTMKAC	1 cut(s)	2079
FokI	GGATG	8 cut(s)	172, 1526, 1649, 2281, 2404, 2675, 2915, 3652
FriOI	GRGCYC	1 cut(s)	2979
FspI	TGCGCA	1 cut(s)	1914
GsaI	CCCAGC	2 cut(s)	1149, 1944
HaeII	RGCGCY	4 cut(s)	183, 239, 867, 2033
HapII	CCGG	8 cut(s)	575, 2015, 2847, 2851, 2868, 2935, 2963, 2991
HgaI	GACGC	3 cut(s)	403, 2901, 3733
Hin1I	GRCGYC	4 cut(s)	180, 444, 1677, 3725
HincII	GTYRAC	2 cut(s)	2203, 3126
HindII	GTYRAC	2 cut(s)	2203, 3126
HindIII	AAGCTT	1 cut(s)	1404
HpaI	GTTAAC	1 cut(s)	2203
HpaII	CCGG	8 cut(s)	575, 2015, 2847, 2851, 2868, 2935, 2963, 2991
Hpy166II	GTNNAC	4 cut(s)	2080, 2203, 2940, 3126
Hpy8I	GTNNAC	4 cut(s)	2080, 2203, 2940, 3126
Hpy99I	CGWCG	2 cut(s)	1636, 1679
HpyAV	CCTTC	9 cut(s)	1025, 1553, 1955, 2021, 2632, 2663, 2960, 3334, 3520
HpyCH4IV	ACGT	9 cut(s)	444, 1050, 1077, 1627, 1677, 1741, 2677, 2799, 3012
HpySE526I	ACGT	9 cut(s)	444, 1050, 1077, 1627, 1677, 1741, 2677, 2799, 3012
Hsp92I	GRCGYC	4 cut(s)	180, 444, 1677, 3725
KasI	GGCGCC	1 cut(s)	179
Kpn2I	TCCGGA	1 cut(s)	2014
KpnI	GGTACC	1 cut(s)	3273
Ksp22I	TGATCA	2 cut(s)	147, 2308
KspAI	GTTAAC	1 cut(s)	2203
LguI	GCTCTTC	2 cut(s)	43, 1800
LmnI	GCTCC	3 cut(s)	53, 498, 1585
MaeII	ACGT	9 cut(s)	444, 1050, 1077, 1627, 1677, 1741, 2677, 2799, 3012
MaeIII	GTNAC	7 cut(s)	385, 1290, 2422, 2800, 2993, 3008, 3480
MbiI	CCGCTC	2 cut(s)	1890, 3550
MflI	RGATCY	3 cut(s)	2372, 2884, 3739
MhlI	GDGCHC	2 cut(s)	2846, 2979
MlsI	TGGCCA	3 cut(s)	785, 1259, 3677
MluNI	TGGCCA	3 cut(s)	785, 1259, 3677
Mly113I	GGCGCC	1 cut(s)	180
MlyI	GAGTC	5 cut(s)	769, 1011, 1568, 2340, 3652
MmeI	TCCRAC	9 cut(s)	213, 676, 1603, 1762, 2625, 2716, 2880, 2910, 3282
Mox20I	TGGCCA	3 cut(s)	785, 1259, 3677
Mph1103I	ATGCAT	1 cut(s)	691
MroI	TCCGGA	1 cut(s)	2014
MroXI	GAANNNNTTC	1 cut(s)	950
MscI	TGGCCA	3 cut(s)	785, 1259, 3677
MseI	TTAA	5 cut(s)	353, 1133, 2202, 3140, 3221
MslI	CAYNNNNRTG	1 cut(s)	66
Msp20I	TGGCCA	3 cut(s)	785, 1259, 3677
MspA1I	CMGCKG	4 cut(s)	974, 1145, 1619, 2420
MspI	CCGG	8 cut(s)	575, 2015, 2847, 2851, 2868, 2935, 2963, 2991
MspR9I	CCNGG	7 cut(s)	576, 770, 2518, 2545, 2752, 2852, 2963
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	4 cut(s)	770, 2518, 2545, 2752
MvnI	CGCG	1 cut(s)	812
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	3 cut(s)	576, 2852, 2963
NcoI	CCATGG	1 cut(s)	859
NheI	GCTAGC	2 cut(s)	532, 2581
NlaIV	GGNNCC	5 cut(s)	181, 462, 1140, 2332, 3271
NmuCI	GTSAC	5 cut(s)	385, 1290, 2422, 2800, 2993
NruI	TCGCGA	1 cut(s)	812
NsbI	TGCGCA	1 cut(s)	1914
NsiI	ATGCAT	1 cut(s)	691
NspI	RCATGY	1 cut(s)	386
NspV	TTCGAA	1 cut(s)	2292
PagI	TCATGA	2 cut(s)	2829, 3355
PceI	AGGCCT	1 cut(s)	3037
PciSI	GCTCTTC	2 cut(s)	43, 1800
PcsI	WCGNNNNNNNCGW	1 cut(s)	1187
PctI	GAATGC	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	950
PfeI	GAWTC	7 cut(s)	571, 994, 1016, 1240, 1580, 2281, 3060
Pfl23II	CGTACG	1 cut(s)	1628
PfoI	TCCNGGA	1 cut(s)	2543
PinAI	ACCGGT	2 cut(s)	2934, 2990
PleI	GAGTC	5 cut(s)	768, 1010, 1568, 2340, 3652
PluTI	GGCGCC	1 cut(s)	183
PpsI	GAGTC	5 cut(s)	768, 1010, 1568, 2340, 3652
Ppu21I	YACGTR	2 cut(s)	1078, 2678
PshBI	ATTAAT	1 cut(s)	3140
Psp1406I	AACGTT	1 cut(s)	1050
Psp6I	CCWGG	4 cut(s)	768, 2516, 2543, 2750
PspFI	CCCAGC	2 cut(s)	1145, 1940
PspGI	CCWGG	4 cut(s)	768, 2516, 2543, 2750
PspLI	CGTACG	1 cut(s)	1628
PspN4I	GGNNCC	5 cut(s)	181, 462, 1140, 2332, 3271
PspPI	GGNCC	7 cut(s)	766, 1799, 2635, 2662, 2672, 2932, 3683
PstI	CTGCAG	2 cut(s)	730, 2590
PstNI	CAGNNNCTG	4 cut(s)	664, 769, 974, 1972
PsuI	RGATCY	3 cut(s)	2372, 2884, 3739
PvuII	CAGCTG	3 cut(s)	1145, 1619, 2420
RruI	TCGCGA	1 cut(s)	812
RseI	CAYNNNNRTG	1 cut(s)	66
SapI	GCTCTTC	2 cut(s)	43, 1800
SaqAI	TTAA	5 cut(s)	353, 1133, 2202, 3140, 3221
Sau96I	GGNCC	7 cut(s)	766, 1799, 2635, 2662, 2672, 2932, 3683
ScaI	AGTACT	3 cut(s)	950, 2243, 3627
SchI	GAGTC	5 cut(s)	769, 1011, 1568, 2340, 3652
ScrFI	CCNGG	7 cut(s)	576, 770, 2518, 2545, 2752, 2852, 2963
SduI	GDGCHC	2 cut(s)	2846, 2979
SfcI	CTRYAG	3 cut(s)	726, 2586, 3447
SfoI	GGCGCC	1 cut(s)	181
SfuI	TTCGAA	1 cut(s)	2292
SinI	GGWCC	3 cut(s)	1799, 2635, 2932
SmiMI	CAYNNNNRTG	1 cut(s)	66
SmlI	CTYRAG	5 cut(s)	195, 1277, 1891, 2562, 3374
SmoI	CTYRAG	5 cut(s)	195, 1277, 1891, 2562, 3374
SpeI	ACTAGT	1 cut(s)	3569
SseBI	AGGCCT	1 cut(s)	3037
SspDI	GGCGCC	1 cut(s)	179
StuI	AGGCCT	1 cut(s)	3037
StyD4I	CCNGG	7 cut(s)	574, 768, 2516, 2543, 2750, 2850, 2961
StyI	CCWWGG	4 cut(s)	493, 636, 859, 2790
TaiI	ACGT	9 cut(s)	447, 1053, 1080, 1630, 1680, 1744, 2680, 2802, 3015
TaqI	TCGA	8 cut(s)	1014, 1190, 1921, 2292, 2655, 3075, 3144, 3190
TatI	WGTACW	5 cut(s)	243, 948, 2241, 2485, 3625
TauI	GCSGC	5 cut(s)	159, 180, 512, 974, 1890
TfiI	GAWTC	7 cut(s)	571, 994, 1016, 1240, 1580, 2281, 3060
Tru1I	TTAA	5 cut(s)	353, 1133, 2202, 3140, 3221
Tru9I	TTAA	5 cut(s)	353, 1133, 2202, 3140, 3221
TseFI	GTSAC	5 cut(s)	385, 1290, 2422, 2800, 2993
Tsp45I	GTSAC	5 cut(s)	385, 1290, 2422, 2800, 2993
TspGWI	ACGGA	5 cut(s)	40, 603, 607, 2787, 2905
VpaK11BI	GGWCC	3 cut(s)	1799, 2635, 2932
VspI	ATTAAT	1 cut(s)	3140
XagI	CCTNNNNNAGG	1 cut(s)	3377
XapI	RAATTY	3 cut(s)	1067, 1082, 2320
XbaI	TCTAGA	2 cut(s)	1549, 2342
XceI	RCATGY	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1567, 1745
XmiI	GTMKAC	1 cut(s)	2079
XmnI	GAANNNNTTC	1 cut(s)	950
ZraI	GACGTC	2 cut(s)	445, 1678
ZrmI	AGTACT	3 cut(s)	950, 2243, 3627
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.