Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006014

Physical Location & Seq

Genomic Coordinates Forward (+)

215198 .. 219371

Gene Structure 4174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG001700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGCTGAGCAGAGCAACAGCCAGAGCATCAAACCACCTGTTCTTCAAGAACAAGAATTCTCAGTTTCGAGGGCTCAGCAACAATCTCTCATATGCTGCTTCAAACCCTGTATCTAACTTTGTGAGCATCACGTGGAACAACAACAACACCTCTAGAATGTCAAAAATGAAGAGTTTCACAACCCGAGCAACCGCGCAGCCTCTCAAGAATGCTGATGAGCTCATCGACTCTGTCGAGACCTTCATCTTCGATTGCGATGGAGTTATATGGAAAGGAGATAAGCTGATAGATGGCGTCCCAGAAACTCTTGATATGCTACGGTCCAAGGGCAAAAGATTAGTCTTTGTTACCAACAACTCAACAAAATCTAGGAAGCAATATGGTAAAAAGTTTGAGACACTTGGTCTGAATGTCAGTGAGGAAGAAATTTTTGCTTCATCTTTTGCTGCTGCGGCCTATTTGAAGTCCATAAATTTTCCAAAAGATAAAAAGGTTTACGTGATTGGTGAGGATGGTATCTTGAAGGAGCTTGAGGTTGCTGGATTTCAATACCTCGGTGGACCAGTTACAGAAATTTTCTTTGTTACTAGAATCAGAAGAATCATGCTCGATCCAGTACTTTCTGTTTTAGATTCTTTTTGTTTGAGAAGATTATTAGGACGGTATGGGACACTCTGTATACGTGAAAACCCTGGATGTCTTTTCATTGCAACAAATCGTGATGCTGTCACTCATCTCACAGATGCTCAGGAATGGGCAGGTGGTGGTTCCATGGTTGGTGCTATCCAGGGATCTACTCAGCGTGAGCCACTGGTTGTGGGAAAGCCCTCCACATTTATGATGGACTACTTAGCAAATGAATTTGGCATACTGAAGTCACAAATTTGCATGGTCGGGGACAGATTGGATACTGATATTCTGTTTGGACAAAATGGTGGTTGCAAAACTCTTCTTGTTCTCTCAGGTGTCACCACTTTACCAGTGCTTCAAAATCCCAGCAACACCATACAACCAGATTTTTACACCAACAAGATCTCAGACTTTTTGTCTCTCAAGGCTGCAACCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

356

Amino Acids

39.36

Weight (kDa)

9.02

Isoelectric Point (pI)

30.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	79 - 313	2.6e-12	haloacid dehalogenase-like hydrolase
Hydrolase_6	PF13344	81 - 183	2.7e-35	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	273 - 347	2.2e-20	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36700 AT5G36700 AT5G36700 AT5G36700 AT5G36790 AT5G36790 AT5G36790
fragaria_vesca	FvH4_6g00110 FvH4_6g00110
malus_domestica	MD04G1248400.v1.1 MD12G1262300.v1.1
prunus_persica	Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1
pyrus_communis	pycom04g21910 pycom12g24170
rosa_chinensis	RchiOBHm_Chr3g0447461
rosa_laevigata	RLG00000025996
rosa_roxburghii	Rroxscaffold_6G00425680
rosa_rugosa	Rorug02G0601900 Rorug02G0602000
rosa_samantha	Rh3AG002200 Rh3BG001700 Rh3CG002000 Rh3DG002100
rosa_wichuraiana	Rw3G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	749
Acc36I	ACCTGC	1 cut(s)	749
AccI	GTMKAC	1 cut(s)	679
AccII	CGCG	1 cut(s)	194
AciI	CCGC	2 cut(s)	192, 452
AclWI	GGATC	2 cut(s)	605, 799
AcsI	RAATTY	6 cut(s)	55, 426, 472, 573, 860, 882
AcuI	CTGAAG	1 cut(s)	893
AcvI	CACGTG	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	1 cut(s)	618
AgsI	TTSAA	6 cut(s)	46, 102, 463, 523, 548, 989
AhdI	GACNNNNNGTC	2 cut(s)	402, 1045
AjnI	CCWGG	2 cut(s)	691, 786
AluBI	AGCT	3 cut(s)	220, 283, 529
AluI	AGCT	3 cut(s)	220, 283, 529
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	3 cut(s)	230, 389, 1053
AlwI	GGATC	2 cut(s)	605, 799
Ama87I	CYCGRG	1 cut(s)	183
AoxI	GGCC	1 cut(s)	453
ApeKI	GCWGC	5 cut(s)	95, 196, 446, 449, 1058
ApoI	RAATTY	6 cut(s)	55, 426, 472, 573, 860, 882
ArsI	GACNNNNNNTTYG	2 cut(s)	324, 356
Asp700I	GAANNNNTTC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	2 cut(s)	321, 560
AsuHPI	GGTGA	2 cut(s)	518, 961
AvaI	CYCGRG	1 cut(s)	183
AvaII	GGWCC	2 cut(s)	321, 560
BanII	GRGCYC	2 cut(s)	75, 222
BbrPI	CACGTG	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	5 cut(s)	82, 208, 433, 436, 1045
BccI	CCATC	4 cut(s)	251, 284, 506, 835
BciT130I	CCWGG	2 cut(s)	693, 788
BciVI	GTATCC	1 cut(s)	901
BcoDI	GTCTC	3 cut(s)	230, 389, 1053
BfaI	CTAG	3 cut(s)	153, 369, 588
BfuAI	ACCTGC	1 cut(s)	749
BfuI	GTATCC	1 cut(s)	901
BglII	AGATCT	1 cut(s)	1032
BisI	GCNGC	6 cut(s)	96, 197, 447, 450, 453, 1059
BlpI	GCTNAGC	2 cut(s)	5, 74
BlsI	GCNGC	6 cut(s)	97, 198, 448, 451, 454, 1060
BmcAI	AGTACT	1 cut(s)	618
Bme1390I	CCNGG	2 cut(s)	693, 788
Bme18I	GGWCC	2 cut(s)	321, 560
BmeRI	GACNNNNNGTC	2 cut(s)	402, 1045
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	2 cut(s)	321, 560
BmiI	GGNNCC	1 cut(s)	769
BmrFI	CCNGG	2 cut(s)	693, 788
BmsI	GCATC	4 cut(s)	35, 135, 712, 733
Bpu10I	CCTNAGC	1 cut(s)	747
Bpu1102I	GCTNAGC	2 cut(s)	5, 74
BpuEI	CTTGAG	3 cut(s)	188, 551, 1037
BsaAI	YACGTR	3 cut(s)	132, 499, 683
BsaHI	GRCGYC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	5 cut(s)	324, 553, 691, 771, 787
Bse1I	ACTGG	4 cut(s)	563, 614, 816, 980
Bse3DI	GCAATG	1 cut(s)	705
BseBI	CCWGG	2 cut(s)	693, 788
BseDI	CCNNGG	5 cut(s)	324, 553, 691, 771, 787
BseGI	GGATG	2 cut(s)	517, 701
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	6 cut(s)	74, 88, 761, 812, 975, 1050
BseNI	ACTGG	4 cut(s)	563, 614, 816, 980
BseXI	GCAGC	5 cut(s)	82, 208, 433, 436, 1045
BseYI	CCCAGC	1 cut(s)	995
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	1 cut(s)	455
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	183
BslFI	GGGAC	3 cut(s)	281, 682, 911
BsmAI	GTCTC	3 cut(s)	230, 389, 1053
BsmFI	GGGAC	3 cut(s)	281, 682, 911
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	455
Bso31I	GGTCTC	1 cut(s)	230
BsoBI	CYCGRG	1 cut(s)	183
Bsp1286I	GDGCHC	2 cut(s)	75, 222
Bsp143I	GATC	3 cut(s)	610, 791, 1032
Bsp1720I	GCTNAGC	2 cut(s)	5, 74
Bsp19I	CCATGG	1 cut(s)	771
BspACI	CCGC	2 cut(s)	192, 452
BspANI	GGCC	1 cut(s)	455
BspCNI	CTCAG	6 cut(s)	73, 87, 760, 811, 974, 1049
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	769
BspMI	ACCTGC	1 cut(s)	749
BspPI	GGATC	2 cut(s)	605, 799
BspTNI	GGTCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	705
BsrI	ACTGG	4 cut(s)	563, 614, 816, 980
BssECI	CCNNGG	5 cut(s)	324, 553, 691, 771, 787
BssMI	GATC	3 cut(s)	610, 791, 1032
BssNAI	GTATAC	1 cut(s)	680
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	2 cut(s)	324, 771
Bst1107I	GTATAC	1 cut(s)	680
Bst2UI	CCWGG	2 cut(s)	693, 788
Bst4CI	ACNGT	3 cut(s)	321, 663, 1066
Bst6I	CTCTTC	2 cut(s)	164, 954
BstACI	GRCGYC	1 cut(s)	294
BstBAI	YACGTR	3 cut(s)	132, 499, 683
BstDEI	CTNAG	8 cut(s)	5, 60, 74, 747, 798, 850, 961, 1036
BstDSI	CCRYGG	1 cut(s)	771
BstF5I	GGATG	2 cut(s)	517, 701
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	3 cut(s)	613, 794, 1035
BstMAI	GTCTC	3 cut(s)	230, 389, 1053
BstMBI	GATC	3 cut(s)	610, 791, 1032
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	2 cut(s)	693, 788
BstSCI	CCNGG	2 cut(s)	691, 786
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	5 cut(s)	82, 208, 433, 436, 1045
BstX2I	RGATCY	2 cut(s)	791, 1032
BstYI	RGATCY	2 cut(s)	791, 1032
BstZ17I	GTATAC	1 cut(s)	680
BsuI	GTATCC	1 cut(s)	901
BsuRI	GGCC	1 cut(s)	455
BtgI	CCRYGG	1 cut(s)	771
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	517, 701
BtsIMutI	CAGTG	3 cut(s)	421, 809, 987
BveI	ACCTGC	1 cut(s)	749
CfoI	GCGC	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	321, 560
CseI	GACGC	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	617
CviAII	CATG	3 cut(s)	604, 772, 889
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	8 cut(s)	5, 60, 74, 747, 798, 850, 961, 1036
DpnI	GATC	3 cut(s)	612, 793, 1034
DpnII	GATC	3 cut(s)	610, 791, 1032
DriI	GACNNNNNGTC	2 cut(s)	402, 1045
Eam1104I	CTCTTC	2 cut(s)	164, 954
Eam1105I	GACNNNNNGTC	2 cut(s)	402, 1045
EarI	CTCTTC	2 cut(s)	164, 954
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	2 cut(s)	324, 771
Eco24I	GRGCYC	2 cut(s)	75, 222
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	2 cut(s)	321, 560
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	893
Eco72I	CACGTG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	691, 786
EcoT14I	CCWWGG	2 cut(s)	324, 771
EcoT38I	GRGCYC	2 cut(s)	75, 222
ErhI	CCWWGG	2 cut(s)	324, 771
FaeI	CATG	3 cut(s)	607, 775, 892
FaqI	GGGAC	3 cut(s)	281, 682, 911
FatI	CATG	3 cut(s)	603, 771, 888
FauNDI	CATATG	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	679
Fnu4HI	GCNGC	6 cut(s)	96, 197, 447, 450, 453, 1059
FokI	GGATG	2 cut(s)	524, 708
FriOI	GRGCYC	2 cut(s)	75, 222
Fsp4HI	GCNGC	6 cut(s)	96, 197, 447, 450, 453, 1059
FspBI	CTAG	3 cut(s)	153, 369, 588
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	6 cut(s)	96, 197, 447, 450, 453, 1059
GsaI	CCCAGC	1 cut(s)	999
HaeIII	GGCC	1 cut(s)	455
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	607, 775, 892
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	4 cut(s)	227, 591, 600, 632
HphI	GGTGA	2 cut(s)	518, 961
Hpy166II	GTNNAC	3 cut(s)	496, 560, 680
Hpy188I	TCNGA	3 cut(s)	408, 596, 1039
Hpy188III	TCNNGA	8 cut(s)	46, 153, 205, 235, 308, 520, 719, 749
Hpy8I	GTNNAC	3 cut(s)	496, 560, 680
HpyAV	CCTTC	2 cut(s)	250, 517
HpyCH4III	ACNGT	3 cut(s)	321, 663, 1066
HpyCH4IV	ACGT	3 cut(s)	131, 498, 682
HpyCH4V	TGCA	4 cut(s)	710, 888, 942, 1061
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	8 cut(s)	5, 60, 74, 747, 798, 850, 961, 1036
HpySE526I	ACGT	3 cut(s)	131, 498, 682
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	607, 775, 892
HspAI	GCGC	1 cut(s)	194
Kzo9I	GATC	3 cut(s)	610, 791, 1032
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	5 cut(s)	82, 208, 433, 436, 1045
LweI	GCATC	4 cut(s)	35, 135, 712, 733
MaeI	CTAG	3 cut(s)	153, 369, 588
MaeII	ACGT	3 cut(s)	131, 498, 682
MaeIII	GTNAC	6 cut(s)	346, 565, 583, 727, 876, 967
MalI	GATC	3 cut(s)	612, 793, 1034
MboI	GATC	3 cut(s)	610, 791, 1032
MboII	GAAGA	7 cut(s)	34, 181, 238, 434, 609, 660, 941
MflI	RGATCY	2 cut(s)	791, 1032
MhlI	GDGCHC	2 cut(s)	75, 222
MluCI	AATT	6 cut(s)	55, 426, 472, 573, 860, 882
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	8 cut(s)	62, 160, 210, 412, 502, 526, 563, 838
MroXI	GAANNNNTTC	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	836
MspR9I	CCNGG	2 cut(s)	693, 788
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	2 cut(s)	693, 788
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	452
NcoI	CCATGG	1 cut(s)	771
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	3 cut(s)	610, 791, 1032
NlaIII	CATG	3 cut(s)	607, 775, 892
NlaIV	GGNNCC	1 cut(s)	769
NmuCI	GTSAC	3 cut(s)	727, 876, 967
PaqCI	CACCTGC	1 cut(s)	749
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	3 cut(s)	591, 600, 632
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	6 cut(s)	97, 198, 448, 451, 454, 1060
PleI	GAGTC	1 cut(s)	221
PmaCI	CACGTG	1 cut(s)	132
PmlI	CACGTG	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	221
Ppu21I	YACGTR	3 cut(s)	132, 499, 683
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	691, 786
PspCI	CACGTG	1 cut(s)	132
PspFI	CCCAGC	1 cut(s)	995
PspGI	CCWGG	2 cut(s)	691, 786
PspN4I	GGNNCC	1 cut(s)	769
PspPI	GGNCC	2 cut(s)	321, 560
PsuI	RGATCY	2 cut(s)	791, 1032
PsyI	GACNNNGTC	1 cut(s)	230
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
RseI	CAYNNNNRTG	1 cut(s)	836
SacI	GAGCTC	1 cut(s)	222
SatI	GCNGC	6 cut(s)	96, 197, 447, 450, 453, 1059
Sau3AI	GATC	3 cut(s)	610, 791, 1032
Sau96I	GGNCC	2 cut(s)	321, 560
ScaI	AGTACT	1 cut(s)	618
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	693, 788
SduI	GDGCHC	2 cut(s)	75, 222
SfaNI	GCATC	4 cut(s)	35, 135, 712, 733
SinI	GGWCC	2 cut(s)	321, 560
SmiMI	CAYNNNNRTG	1 cut(s)	836
SmlI	CTYRAG	3 cut(s)	203, 530, 1052
SmoI	CTYRAG	3 cut(s)	203, 530, 1052
Sse9I	AATT	6 cut(s)	55, 426, 472, 573, 860, 882
SsiI	CCGC	2 cut(s)	192, 452
SspMI	CTAG	3 cut(s)	153, 369, 588
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	691, 786
StyI	CCWWGG	2 cut(s)	324, 771
TaaI	ACNGT	3 cut(s)	321, 663, 1066
TaiI	ACGT	3 cut(s)	134, 501, 685
TaqI	TCGA	5 cut(s)	67, 225, 234, 249, 609
TasI	AATT	6 cut(s)	55, 426, 472, 573, 860, 882
TatI	WGTACW	1 cut(s)	616
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	3 cut(s)	591, 600, 632
TscAI	CASTG	3 cut(s)	421, 816, 987
TseFI	GTSAC	3 cut(s)	727, 876, 967
TseI	GCWGC	5 cut(s)	95, 196, 446, 449, 1058
Tsp45I	GTSAC	3 cut(s)	727, 876, 967
TspDTI	ATGAA	5 cut(s)	182, 232, 426, 694, 873
TspRI	CASTG	3 cut(s)	421, 816, 987
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	2 cut(s)	321, 560
XapI	RAATTY	6 cut(s)	55, 426, 472, 573, 860, 882
XbaI	TCTAGA	1 cut(s)	152
XcmI	CCANNNNNNNNNTGG	1 cut(s)	838
XmiI	GTMKAC	1 cut(s)	679
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	3 cut(s)	153, 369, 588
ZrmI	AGTACT	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.