Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006014

Physical Location & Seq

Genomic Coordinates Forward (+)

216968 .. 221546

Gene Structure 4579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G000110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCTGAGCAGAGCAACAGCCAGAGCATCAAACCACTTGTTCTTCACGAACAAGAATAAGAATTCTCAGTTTCTAGGGCTCAGCAACAATCTCTCATATGCTGCTTCAAACCCTGTATCTAACTTTGTGAGCATCACTTGGAACAACAACAACACCTCTAGAATGTCAAAAATGAAGAGTTTCACAACCCGAGCAACCGCGCAGCCTCTCAAGAATGCTGATGAGCTCATCGACTCTGTCGAGACCTTCATCTTCGATTGCGATGGAGTTATATGGAAAGGAGATAAGCTGATAGATGGCGTCCCAGAAACTCTTGATATGCTACGGTCCAAGGGCAAAAGATTAGTCTTTGTTACCAACAACTCAACAAAATCTAGGAAGCAATATGGTAAAAAGTTTGAGACACTTGGTCTGAATGTCAGTGAGGAAGAAATTTTTGCTTCATCTTTTGCTGCTGCTGCCTATTTGAAGTCCATAAATTTTCCAAAAGATAAAAAGGTTTACGTGATTGGTGAGGATGGTATCTTGAAGGAGCTTGAGCTTGCTGGATTTCAATACCTCGGTGGACCAGAAGACGGAGAGAAGAAGATAGAGCTGAAGCCTGGATTTCTGATGGAGCATGATGAGAGCGTTGGAGCTGTTGTGGTTGGATTTGATCGATATGTCAACTACTTCAAAATTCAGTATGGGACACTCTGTATACGTGAAAACCCTGGATGTCTTTTCATTGCAACAAATCGTGATGCTGTCACTCATCTCACAGATGCTCAGGAATGGGCAGGTGGTGGTTCCATGGTTGGTGCTATCCAGGGATCTACTCAGCGTGAGCCACTGGTTGTGGGAAAGCCCTCCACATTTATGATGGACTACTTAGCAAATGAATTTGGCATACTGAAGTCACAAATTTGCATGGTCGGGGACAGATTGGATACTGATATTCTGTTTGGACAAAATGGTGGTTGCAAAACTCTTCTTGTTCTCTCAGGTGTCACCACTTTACCAGTGCTTCAAAATCCCAGCAACACCATACAACCAGATTTTTACACCAACAAGATCTCAGACTTTTTGTCTCCCAAGGCTGCAACCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

363

Amino Acids

39.99

Weight (kDa)

6.84

Isoelectric Point (pI)

26.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	81 - 320	7.4e-14	haloacid dehalogenase-like hydrolase
Hydrolase_6	PF13344	83 - 185	2.4e-35	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	280 - 354	2.2e-20	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36700 AT5G36700 AT5G36700 AT5G36700 AT5G36790 AT5G36790 AT5G36790
fragaria_vesca	FvH4_6g00110 FvH4_6g00110
malus_domestica	MD04G1248400.v1.1 MD12G1262300.v1.1
prunus_persica	Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1
pyrus_communis	pycom04g21910 pycom12g24170
rosa_chinensis	RchiOBHm_Chr3g0447461
rosa_laevigata	RLG00000025996
rosa_roxburghii	Rroxscaffold_6G00425680
rosa_rugosa	Rorug02G0601900 Rorug02G0602000
rosa_samantha	Rh3AG002200 Rh3BG001700 Rh3CG002000 Rh3DG002100
rosa_wichuraiana	Rw3G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	770
Acc36I	ACCTGC	1 cut(s)	770
AccI	GTMKAC	1 cut(s)	700
AccII	CGCG	1 cut(s)	200
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	1 cut(s)	820
AcsI	RAATTY	6 cut(s)	61, 432, 478, 678, 881, 903
AcuI	CTGAAG	2 cut(s)	617, 914
AcyI	GRCGYC	1 cut(s)	300
AfiI	CCNNNNNNNGG	1 cut(s)	575
AgsI	TTSAA	6 cut(s)	108, 469, 529, 554, 676, 1010
AhdI	GACNNNNNGTC	2 cut(s)	408, 1066
AjnI	CCWGG	3 cut(s)	601, 712, 807
AluBI	AGCT	6 cut(s)	226, 289, 535, 541, 595, 638
AluI	AGCT	6 cut(s)	226, 289, 535, 541, 595, 638
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	3 cut(s)	236, 395, 1074
AlwI	GGATC	1 cut(s)	820
Ama87I	CYCGRG	1 cut(s)	189
ApeKI	GCWGC	6 cut(s)	101, 202, 452, 455, 458, 1079
ApoI	RAATTY	6 cut(s)	61, 432, 478, 678, 881, 903
ArsI	GACNNNNNNTTYG	2 cut(s)	330, 362
Asp700I	GAANNNNTTC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	2 cut(s)	327, 566
AsuHPI	GGTGA	2 cut(s)	524, 982
AvaI	CYCGRG	1 cut(s)	189
AvaII	GGWCC	2 cut(s)	327, 566
BanII	GRGCYC	2 cut(s)	81, 228
BbsI	GAAGAC	1 cut(s)	579
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	6 cut(s)	88, 214, 439, 442, 445, 1066
BccI	CCATC	5 cut(s)	257, 290, 512, 607, 856
BciT130I	CCWGG	3 cut(s)	603, 714, 809
BciVI	GTATCC	1 cut(s)	922
BcoDI	GTCTC	3 cut(s)	236, 395, 1074
BfaI	CTAG	3 cut(s)	74, 159, 375
BfuAI	ACCTGC	1 cut(s)	770
BfuI	GTATCC	1 cut(s)	922
BglII	AGATCT	1 cut(s)	1053
BisI	GCNGC	6 cut(s)	102, 203, 453, 456, 459, 1080
BlpI	GCTNAGC	2 cut(s)	5, 80
BlsI	GCNGC	6 cut(s)	103, 204, 454, 457, 460, 1081
Bme1390I	CCNGG	3 cut(s)	603, 714, 809
Bme18I	GGWCC	2 cut(s)	327, 566
BmeRI	GACNNNNNGTC	2 cut(s)	408, 1066
BmeT110I	CYCGRG	1 cut(s)	189
BmgT120I	GGNCC	2 cut(s)	327, 566
BmiI	GGNNCC	1 cut(s)	790
BmrFI	CCNGG	3 cut(s)	603, 714, 809
BmsI	GCATC	4 cut(s)	35, 141, 733, 754
BpiI	GAAGAC	1 cut(s)	579
Bpu10I	CCTNAGC	1 cut(s)	768
Bpu1102I	GCTNAGC	2 cut(s)	5, 80
BpuEI	CTTGAG	2 cut(s)	194, 557
Bsa29I	ATCGAT	1 cut(s)	658
BsaAI	YACGTR	2 cut(s)	505, 704
BsaHI	GRCGYC	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	6 cut(s)	330, 559, 712, 792, 808, 1074
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bsc4I	CCNNNNNNNGG	1 cut(s)	575
Bse1I	ACTGG	2 cut(s)	837, 1001
Bse3DI	GCAATG	1 cut(s)	726
BseBI	CCWGG	3 cut(s)	603, 714, 809
BseCI	ATCGAT	1 cut(s)	658
BseDI	CCNNGG	6 cut(s)	330, 559, 712, 792, 808, 1074
BseGI	GGATG	2 cut(s)	523, 722
BseLI	CCNNNNNNNGG	1 cut(s)	575
BseMI	GCAATG	1 cut(s)	726
BseMII	CTCAG	6 cut(s)	80, 94, 782, 833, 996, 1071
BseNI	ACTGG	2 cut(s)	837, 1001
BseXI	GCAGC	6 cut(s)	88, 214, 439, 442, 445, 1066
BseYI	CCCAGC	1 cut(s)	1016
Bsh1236I	CGCG	1 cut(s)	200
BshVI	ATCGAT	1 cut(s)	658
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	189
BslFI	GGGAC	3 cut(s)	287, 703, 932
BslI	CCNNNNNNNGG	1 cut(s)	575
BsmAI	GTCTC	3 cut(s)	236, 395, 1074
BsmFI	GGGAC	3 cut(s)	287, 703, 932
BsmI	GAATGC	1 cut(s)	220
Bso31I	GGTCTC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	189
Bsp1286I	GDGCHC	2 cut(s)	81, 228
Bsp143I	GATC	3 cut(s)	655, 812, 1053
Bsp1720I	GCTNAGC	2 cut(s)	5, 80
Bsp19I	CCATGG	1 cut(s)	792
BspACI	CCGC	1 cut(s)	198
BspCNI	CTCAG	6 cut(s)	79, 93, 781, 832, 995, 1070
BspDI	ATCGAT	1 cut(s)	658
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	790
BspMI	ACCTGC	1 cut(s)	770
BspPI	GGATC	1 cut(s)	820
BspTNI	GGTCTC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	726
BsrI	ACTGG	2 cut(s)	837, 1001
BssECI	CCNNGG	6 cut(s)	330, 559, 712, 792, 808, 1074
BssMI	GATC	3 cut(s)	655, 812, 1053
BssNAI	GTATAC	1 cut(s)	701
BssNI	GRCGYC	1 cut(s)	300
BssT1I	CCWWGG	3 cut(s)	330, 792, 1074
Bst1107I	GTATAC	1 cut(s)	701
Bst2UI	CCWGG	3 cut(s)	603, 714, 809
Bst4CI	ACNGT	2 cut(s)	327, 1087
Bst6I	CTCTTC	2 cut(s)	170, 975
BstACI	GRCGYC	1 cut(s)	300
BstBAI	YACGTR	2 cut(s)	505, 704
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	8 cut(s)	5, 66, 80, 768, 819, 871, 982, 1057
BstDSI	CCRYGG	1 cut(s)	792
BstF5I	GGATG	2 cut(s)	523, 722
BstFNI	CGCG	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	3 cut(s)	658, 815, 1056
BstMAI	GTCTC	3 cut(s)	236, 395, 1074
BstMBI	GATC	3 cut(s)	655, 812, 1053
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNI	CCWGG	3 cut(s)	603, 714, 809
BstSCI	CCNGG	3 cut(s)	601, 712, 807
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	6 cut(s)	88, 214, 439, 442, 445, 1066
BstV2I	GAAGAC	1 cut(s)	579
BstX2I	RGATCY	2 cut(s)	812, 1053
BstYI	RGATCY	2 cut(s)	812, 1053
BstZ17I	GTATAC	1 cut(s)	701
Bsu15I	ATCGAT	1 cut(s)	658
BsuI	GTATCC	1 cut(s)	922
BsuTUI	ATCGAT	1 cut(s)	658
BtgI	CCRYGG	1 cut(s)	792
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	523, 722
BtsIMutI	CAGTG	3 cut(s)	427, 830, 1008
BveI	ACCTGC	1 cut(s)	770
Cac8I	GCNNGC	1 cut(s)	543
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	327, 566
ClaI	ATCGAT	1 cut(s)	658
CseI	GACGC	1 cut(s)	289
CviAII	CATG	3 cut(s)	620, 793, 910
DdeI	CTNAG	8 cut(s)	5, 66, 80, 768, 819, 871, 982, 1057
DpnI	GATC	3 cut(s)	657, 814, 1055
DpnII	GATC	3 cut(s)	655, 812, 1053
DriI	GACNNNNNGTC	2 cut(s)	408, 1066
Eam1104I	CTCTTC	2 cut(s)	170, 975
Eam1105I	GACNNNNNGTC	2 cut(s)	408, 1066
EarI	CTCTTC	2 cut(s)	170, 975
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	3 cut(s)	330, 792, 1074
Eco24I	GRGCYC	2 cut(s)	81, 228
Eco31I	GGTCTC	1 cut(s)	236
Eco47I	GGWCC	2 cut(s)	327, 566
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	2 cut(s)	617, 914
Eco88I	CYCGRG	1 cut(s)	189
EcoICRI	GAGCTC	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	61
EcoRII	CCWGG	3 cut(s)	601, 712, 807
EcoT14I	CCWWGG	3 cut(s)	330, 792, 1074
EcoT38I	GRGCYC	2 cut(s)	81, 228
ErhI	CCWWGG	3 cut(s)	330, 792, 1074
FaeI	CATG	3 cut(s)	623, 796, 913
FaqI	GGGAC	3 cut(s)	287, 703, 932
FatI	CATG	3 cut(s)	619, 792, 909
FauNDI	CATATG	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	700
Fnu4HI	GCNGC	6 cut(s)	102, 203, 453, 456, 459, 1080
FokI	GGATG	2 cut(s)	530, 729
FriOI	GRGCYC	2 cut(s)	81, 228
Fsp4HI	GCNGC	6 cut(s)	102, 203, 453, 456, 459, 1080
FspBI	CTAG	3 cut(s)	74, 159, 375
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	6 cut(s)	102, 203, 453, 456, 459, 1080
GsaI	CCCAGC	1 cut(s)	1020
HgaI	GACGC	1 cut(s)	289
HhaI	GCGC	1 cut(s)	202
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	3 cut(s)	623, 796, 913
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HinfI	GANTC	1 cut(s)	233
HphI	GGTGA	2 cut(s)	524, 982
Hpy166II	GTNNAC	4 cut(s)	502, 566, 667, 701
Hpy188I	TCNGA	3 cut(s)	414, 612, 1060
Hpy188III	TCNNGA	8 cut(s)	46, 159, 211, 241, 314, 526, 740, 770
Hpy8I	GTNNAC	4 cut(s)	502, 566, 667, 701
HpyAV	CCTTC	2 cut(s)	256, 523
HpyCH4III	ACNGT	2 cut(s)	327, 1087
HpyCH4IV	ACGT	2 cut(s)	504, 703
HpyCH4V	TGCA	4 cut(s)	731, 909, 963, 1082
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	8 cut(s)	5, 66, 80, 768, 819, 871, 982, 1057
HpySE526I	ACGT	2 cut(s)	504, 703
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	3 cut(s)	623, 796, 913
HspAI	GCGC	1 cut(s)	200
Kzo9I	GATC	3 cut(s)	655, 812, 1053
LmnI	GCTCC	3 cut(s)	532, 616, 635
Lsp1109I	GCAGC	6 cut(s)	88, 214, 439, 442, 445, 1066
LweI	GCATC	4 cut(s)	35, 141, 733, 754
MaeI	CTAG	3 cut(s)	74, 159, 375
MaeII	ACGT	2 cut(s)	504, 703
MaeIII	GTNAC	4 cut(s)	352, 748, 897, 988
MalI	GATC	3 cut(s)	657, 814, 1055
MboI	GATC	3 cut(s)	655, 812, 1053
MboII	GAAGA	8 cut(s)	34, 187, 244, 440, 584, 595, 598, 962
MflI	RGATCY	2 cut(s)	812, 1053
MhlI	GDGCHC	2 cut(s)	81, 228
MluCI	AATT	6 cut(s)	61, 432, 478, 678, 881, 903
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	2 cut(s)	613, 628
MnlI	CCTC	6 cut(s)	166, 216, 418, 508, 569, 859
MroXI	GAANNNNTTC	1 cut(s)	179
MslI	CAYNNNNRTG	1 cut(s)	857
MspR9I	CCNGG	3 cut(s)	603, 714, 809
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	3 cut(s)	603, 714, 809
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	458
NcoI	CCATGG	1 cut(s)	792
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	3 cut(s)	655, 812, 1053
NlaIII	CATG	3 cut(s)	623, 796, 913
NlaIV	GGNNCC	1 cut(s)	790
NmuCI	GTSAC	3 cut(s)	748, 897, 988
PaqCI	CACCTGC	1 cut(s)	770
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PctI	GAATGC	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	179
PflFI	GACNNNGTC	1 cut(s)	236
PkrI	GCNGC	6 cut(s)	103, 204, 454, 457, 460, 1081
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Ppu21I	YACGTR	2 cut(s)	505, 704
Psp124BI	GAGCTC	1 cut(s)	228
Psp6I	CCWGG	3 cut(s)	601, 712, 807
PspFI	CCCAGC	1 cut(s)	1016
PspGI	CCWGG	3 cut(s)	601, 712, 807
PspN4I	GGNNCC	1 cut(s)	790
PspPI	GGNCC	2 cut(s)	327, 566
PsuI	RGATCY	2 cut(s)	812, 1053
PsyI	GACNNNGTC	1 cut(s)	236
RseI	CAYNNNNRTG	1 cut(s)	857
SacI	GAGCTC	1 cut(s)	228
SatI	GCNGC	6 cut(s)	102, 203, 453, 456, 459, 1080
Sau3AI	GATC	3 cut(s)	655, 812, 1053
Sau96I	GGNCC	2 cut(s)	327, 566
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	3 cut(s)	603, 714, 809
SduI	GDGCHC	2 cut(s)	81, 228
SfaNI	GCATC	4 cut(s)	35, 141, 733, 754
SinI	GGWCC	2 cut(s)	327, 566
SmiMI	CAYNNNNRTG	1 cut(s)	857
SmlI	CTYRAG	2 cut(s)	209, 536
SmoI	CTYRAG	2 cut(s)	209, 536
Sse9I	AATT	6 cut(s)	61, 432, 478, 678, 881, 903
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	3 cut(s)	74, 159, 375
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	3 cut(s)	601, 712, 807
StyI	CCWWGG	3 cut(s)	330, 792, 1074
TaaI	ACNGT	2 cut(s)	327, 1087
TaiI	ACGT	2 cut(s)	507, 706
TaqI	TCGA	4 cut(s)	231, 240, 255, 658
TasI	AATT	6 cut(s)	61, 432, 478, 678, 881, 903
TscAI	CASTG	3 cut(s)	427, 837, 1008
TseFI	GTSAC	3 cut(s)	748, 897, 988
TseI	GCWGC	6 cut(s)	101, 202, 452, 455, 458, 1079
Tsp45I	GTSAC	3 cut(s)	748, 897, 988
TspDTI	ATGAA	5 cut(s)	188, 238, 432, 715, 894
TspGWI	ACGGA	1 cut(s)	591
TspRI	CASTG	3 cut(s)	427, 837, 1008
Tth111I	GACNNNGTC	1 cut(s)	236
VpaK11BI	GGWCC	2 cut(s)	327, 566
XapI	RAATTY	6 cut(s)	61, 432, 478, 678, 881, 903
XbaI	TCTAGA	1 cut(s)	158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	859
XmiI	GTMKAC	1 cut(s)	700
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	3 cut(s)	74, 159, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.