Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006014

Physical Location & Seq

Genomic Coordinates Reverse (-)

22866719 .. 22869679

Gene Structure 2961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21910.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCTACGGTCTAAGGGCAAAAGATTAGTTTTCGTTACCAACAACTCAACAAAGTCTAGGAAGCAGTATGGTAAAAAGTTTGAGACGCTTGGTCTGAATGTCAAAGAGGAGGAAATTTTTGCGTCATCTTTTGCTGCTGCTGCCTATTTGAAGTCCATTAATTTCCCAAAAGATAAAAAGGTCTATGTGATTGGCGAGGAAGGCATCTTGAAGGAGCTTGAGCTTGCTGGATATGAGTACCTTGGTGGACCAGAAGATGGTGGGAAGAAAATAGAGCTGAAGCCTGGATATCTGATGGAGCATGATGAGAGTGTTGGAGCTGTTGTGGTTGGATTTGATCGAAATTTCAACTACTACAAAATTCAGTATGGGACACTCTGTATACGCGAAAACCCTGGATGTCTTTTCATTGCTACAAATCGTGATGCTGTCACTCATCTCACAGATGCTCAGGAATGGGCAGGTGGTGGTTCAATGGTTGGTGCTATCCGTGGATCAACTCAACATGAGCCATTGGTTGTGGGAAAACCCTCAACTTTTATGATGGACTACTTAGCAAATGAATTTGGCATACTGAAGTCACAGATTTGCATGGTTGGGGACAGATTAGATACTGATATTCTGTTTGGACAAAATGGTGGTTGCAAAACTCTTCTTGTTCTCTCGGGCGTCACCACCTTACCAGTGCTTCAGAGTCCCGACAACTCCATACAACCAGATTTTTACACGAACAAGATTTCAGACTTTTTGTCTCTCAAGGCTGCAACTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

258

Amino Acids

28.25

Weight (kDa)

6.34

Isoelectric Point (pI)

24.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36700 AT5G36700 AT5G36700 AT5G36700 AT5G36790 AT5G36790 AT5G36790
fragaria_vesca	FvH4_6g00110 FvH4_6g00110
malus_domestica	MD04G1248400.v1.1 MD12G1262300.v1.1
prunus_persica	Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1
pyrus_communis	pycom04g21910 pycom12g24170
rosa_chinensis	RchiOBHm_Chr3g0447461
rosa_laevigata	RLG00000025996
rosa_roxburghii	Rroxscaffold_6G00425680
rosa_rugosa	Rorug02G0601900 Rorug02G0602000
rosa_samantha	Rh3AG002200 Rh3BG001700 Rh3CG002000 Rh3DG002100
rosa_wichuraiana	Rw3G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	452
Acc36I	ACCTGC	1 cut(s)	452
AccB7I	CCANNNNNTGG	1 cut(s)	257
AccI	GTMKAC	1 cut(s)	382
AccII	CGCG	1 cut(s)	387
AclWI	GGATC	1 cut(s)	502
AcsI	RAATTY	4 cut(s)	114, 343, 360, 563
AcuI	CTGAAG	3 cut(s)	299, 596, 674
AcyI	GRCGYC	1 cut(s)	669
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	4 cut(s)	151, 211, 349, 474
AhdI	GACNNNNNGTC	2 cut(s)	90, 748
AjnI	CCWGG	2 cut(s)	283, 394
AluBI	AGCT	4 cut(s)	217, 223, 277, 320
AluI	AGCT	4 cut(s)	217, 223, 277, 320
Alw26I	GTCTC	2 cut(s)	77, 756
AlwI	GGATC	1 cut(s)	502
Ama87I	CYCGRG	1 cut(s)	664
ApeKI	GCWGC	4 cut(s)	134, 137, 140, 761
ApoI	RAATTY	4 cut(s)	114, 343, 360, 563
AseI	ATTAAT	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	664
AvaI	CYCGRG	1 cut(s)	664
AvaII	GGWCC	1 cut(s)	248
BbvI	GCAGC	4 cut(s)	121, 124, 127, 748
BccI	CCATC	3 cut(s)	251, 289, 538
BciT130I	CCWGG	2 cut(s)	285, 396
BcoDI	GTCTC	2 cut(s)	77, 756
BfaI	CTAG	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	452
BisI	GCNGC	4 cut(s)	135, 138, 141, 762
BlsI	GCNGC	4 cut(s)	136, 139, 142, 763
Bme1390I	CCNGG	2 cut(s)	285, 396
Bme18I	GGWCC	1 cut(s)	248
BmeRI	GACNNNNNGTC	2 cut(s)	90, 748
BmeT110I	CYCGRG	1 cut(s)	664
BmgT120I	GGNCC	1 cut(s)	248
BmrFI	CCNGG	2 cut(s)	285, 396
BmsI	GCATC	3 cut(s)	213, 415, 436
Bpu10I	CCTNAGC	1 cut(s)	450
BpuEI	CTTGAG	2 cut(s)	239, 740
BsaHI	GRCGYC	1 cut(s)	669
BsaJI	CCNNGG	3 cut(s)	241, 394, 490
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	683
Bse3DI	GCAATG	1 cut(s)	408
BseBI	CCWGG	2 cut(s)	285, 396
BseDI	CCNNGG	3 cut(s)	241, 394, 490
BseGI	GGATG	1 cut(s)	404
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	1 cut(s)	464
BseNI	ACTGG	1 cut(s)	683
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	4 cut(s)	121, 124, 127, 748
Bsh1236I	CGCG	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	664
BslFI	GGGAC	3 cut(s)	385, 614, 681
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	2 cut(s)	77, 756
BsmBI	CGTCTC	1 cut(s)	77
BsmFI	GGGAC	3 cut(s)	385, 614, 681
BsoBI	CYCGRG	1 cut(s)	664
Bsp143I	GATC	2 cut(s)	337, 494
BspCNI	CTCAG	1 cut(s)	463
BspFNI	CGCG	1 cut(s)	387
BspMI	ACCTGC	1 cut(s)	452
BspPI	GGATC	1 cut(s)	502
BsrDI	GCAATG	1 cut(s)	408
BsrI	ACTGG	1 cut(s)	683
BssECI	CCNNGG	3 cut(s)	241, 394, 490
BssMI	GATC	2 cut(s)	337, 494
BssNAI	GTATAC	1 cut(s)	383
BssNI	GRCGYC	1 cut(s)	669
BssT1I	CCWWGG	1 cut(s)	241
Bst1107I	GTATAC	1 cut(s)	383
Bst2UI	CCWGG	2 cut(s)	285, 396
Bst4CI	ACNGT	2 cut(s)	9, 769
Bst6I	CTCTTC	1 cut(s)	657
BstACI	GRCGYC	1 cut(s)	669
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	3 cut(s)	12, 450, 553
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	1 cut(s)	404
BstFNI	CGCG	1 cut(s)	387
BstKTI	GATC	2 cut(s)	340, 497
BstMAI	GTCTC	2 cut(s)	77, 756
BstMBI	GATC	2 cut(s)	337, 494
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 201
BstNI	CCWGG	2 cut(s)	285, 396
BstSCI	CCNGG	2 cut(s)	283, 394
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	4 cut(s)	121, 124, 127, 748
BstZ17I	GTATAC	1 cut(s)	383
BtgI	CCRYGG	1 cut(s)	490
BtsCI	GGATG	1 cut(s)	404
BtsIMutI	CAGTG	1 cut(s)	690
BveI	ACCTGC	1 cut(s)	452
Cac8I	GCNNGC	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	248
CseI	GACGC	3 cut(s)	94, 111, 658
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	3 cut(s)	302, 506, 592
CviJI	RGCY	7 cut(s)	217, 223, 277, 283, 320, 511, 761
CviKI_1	RGCY	7 cut(s)	217, 223, 277, 283, 320, 511, 761
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	3 cut(s)	12, 450, 553
DpnI	GATC	2 cut(s)	339, 496
DpnII	GATC	2 cut(s)	337, 494
DriI	GACNNNNNGTC	2 cut(s)	90, 748
Eam1104I	CTCTTC	1 cut(s)	657
Eam1105I	GACNNNNNGTC	2 cut(s)	90, 748
EarI	CTCTTC	1 cut(s)	657
Eco130I	CCWWGG	1 cut(s)	241
Eco32I	GATATC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	248
Eco57I	CTGAAG	3 cut(s)	299, 596, 674
Eco88I	CYCGRG	1 cut(s)	664
EcoRII	CCWGG	2 cut(s)	283, 394
EcoRV	GATATC	1 cut(s)	290
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	3 cut(s)	305, 509, 595
FaqI	GGGAC	3 cut(s)	385, 614, 681
FatI	CATG	3 cut(s)	301, 505, 591
FblI	GTMKAC	1 cut(s)	382
Fnu4HI	GCNGC	4 cut(s)	135, 138, 141, 762
FokI	GGATG	1 cut(s)	411
Fsp4HI	GCNGC	4 cut(s)	135, 138, 141, 762
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	4 cut(s)	135, 138, 141, 762
HgaI	GACGC	3 cut(s)	94, 111, 658
Hin1I	GRCGYC	1 cut(s)	669
Hin1II	CATG	3 cut(s)	305, 509, 595
HinfI	GANTC	1 cut(s)	694
HphI	GGTGA	1 cut(s)	664
Hpy166II	GTNNAC	2 cut(s)	248, 383
Hpy188I	TCNGA	4 cut(s)	96, 294, 693, 742
Hpy188III	TCNNGA	4 cut(s)	208, 422, 452, 698
Hpy8I	GTNNAC	2 cut(s)	248, 383
HpyAV	CCTTC	2 cut(s)	194, 205
HpyCH4III	ACNGT	2 cut(s)	9, 769
HpyCH4V	TGCA	3 cut(s)	591, 645, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 201
HpyF3I	CTNAG	3 cut(s)	12, 450, 553
Hsp92I	GRCGYC	1 cut(s)	669
Hsp92II	CATG	3 cut(s)	305, 509, 595
Kzo9I	GATC	2 cut(s)	337, 494
LmnI	GCTCC	3 cut(s)	214, 298, 317
Lsp1109I	GCAGC	4 cut(s)	121, 124, 127, 748
LweI	GCATC	3 cut(s)	213, 415, 436
MaeI	CTAG	1 cut(s)	57
MaeIII	GTNAC	4 cut(s)	34, 430, 579, 670
MalI	GATC	2 cut(s)	339, 496
MboI	GATC	2 cut(s)	337, 494
MboII	GAAGA	3 cut(s)	266, 277, 644
MluCI	AATT	5 cut(s)	114, 160, 343, 360, 563
MlyI	GAGTC	1 cut(s)	703
MmeI	TCCRAC	2 cut(s)	295, 310
MnlI	CCTC	4 cut(s)	100, 103, 190, 541
MseI	TTAA	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	285, 396
MvaI	CCWGG	2 cut(s)	285, 396
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	2 cut(s)	140, 201
NdeII	GATC	2 cut(s)	337, 494
NlaIII	CATG	3 cut(s)	305, 509, 595
NmuCI	GTSAC	3 cut(s)	430, 579, 670
PaqCI	CACCTGC	1 cut(s)	452
PflMI	CCANNNNNTGG	1 cut(s)	257
PkrI	GCNGC	4 cut(s)	136, 139, 142, 763
PleI	GAGTC	1 cut(s)	702
PpsI	GAGTC	1 cut(s)	702
PshBI	ATTAAT	1 cut(s)	159
Psp6I	CCWGG	2 cut(s)	283, 394
PspGI	CCWGG	2 cut(s)	283, 394
PspPI	GGNCC	1 cut(s)	248
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	4 cut(s)	135, 138, 141, 762
Sau3AI	GATC	2 cut(s)	337, 494
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	2 cut(s)	285, 396
SetI	ASST	8 cut(s)	183, 219, 225, 243, 279, 322, 466, 680
SfaNI	GCATC	3 cut(s)	213, 415, 436
SinI	GGWCC	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	218, 755
SmoI	CTYRAG	2 cut(s)	218, 755
Sse9I	AATT	5 cut(s)	114, 160, 343, 360, 563
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	283, 394
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	9, 769
TaqI	TCGA	1 cut(s)	340
TasI	AATT	5 cut(s)	114, 160, 343, 360, 563
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	690
TseFI	GTSAC	3 cut(s)	430, 579, 670
TseI	GCWGC	4 cut(s)	134, 137, 140, 761
Tsp45I	GTSAC	3 cut(s)	430, 579, 670
TspDTI	ATGAA	2 cut(s)	397, 576
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	1 cut(s)	690
Van91I	CCANNNNNTGG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	248
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	4 cut(s)	114, 343, 360, 563
XmiI	GTMKAC	1 cut(s)	382
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.