Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006014

Physical Location & Seq

Genomic Coordinates Reverse (-)

24519585 .. 24523116

Gene Structure 3532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g24170.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCTGAGCAGAACAACAACAGTGATAGCTTCTGCTTCTGCTTCCGCGAAGAGTTCCCAATTGTTTGGGTTTGGGTCCTTTGGGATCAACAGCAACAACAGCAACAATCTCTTTTGCACTCGTTCTACTAATACTACTAGTACACGTAATCTCTCATGGAAGTCAAGGATGGAGGATAGCTTCAACACTCGGGCCTCCGCGCAGCCTCTCACGAATGCCGATGACCTCATTGACTCTGTAGAGACTTTCATCTTCGACTGCGATGGTGTTATATGGAAAGGAGATAAGCTCATAGATGGTGTCCCCCAAACTCTGGATATGCTCCGGTCCAAGGGCAAAAGATTAGTTTTCGTCACCAACAACTCAACAAAGTCTAGGAAGCAGTATGGTAAAAAGTTTGAGACGCTTGGTCTGAATGTCAATGAGGAGGAAATTTTTGCATCGTCTTTTGCTGCCGCTGCCTATTTAAAGTCCATTAATTTCCCAAAAGATAAAAAGGTCTATGTGATTGGTGAGGAAGGCATCTTGAAGGAGCTTGAGCTTGCTGGATATCAGTACCTTGGTGGACCAGAAGATGGTGGGAAGAAAATAGAGCTGAAACCTGGATATCTGATGGAGCATGATGAGAGTGTTGGAGCTGTTGTGGTTGGATTTGATCGATCTAATTTCAACTACTACAAAATTCAGTATGGGACACTCTGTATACGCGAAAACCCTGGATGTTTTTTCATTGCTACGAATCGTGATGCTGTCACTCATCTTACAGATGCTCAGGAATGGGCAGGTGGTGGTTCAATGGTTGGTGCTATCAGTGGATCTACTCAACGCGAGCCATTGGTTGTGGGAAAACCCTCAACATTTATGATGGACTACTTAGCAAACGAATTTGGTATCCTGAAGTCACCGATCTGCATGGTTGGGGACAGGTTAGATACTGATATTCTGTTTGGACAAAATGGTGGTTGCAAAACTCTTCTGGTTCTCTCAGGCGTCACCACCTTACCGGTGCTTCAGAATCCCGACAACTCCATACAACCAGATTTTTACACAAACAAGATTTCAGACTTTTTGTCTCTCAAGGCTGCAACTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

365

Amino Acids

39.79

Weight (kDa)

5.64

Isoelectric Point (pI)

25.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36700 AT5G36700 AT5G36700 AT5G36700 AT5G36790 AT5G36790 AT5G36790
fragaria_vesca	FvH4_6g00110 FvH4_6g00110
malus_domestica	MD04G1248400.v1.1 MD12G1262300.v1.1
prunus_persica	Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1
pyrus_communis	pycom04g21910 pycom12g24170
rosa_chinensis	RchiOBHm_Chr3g0447461
rosa_laevigata	RLG00000025996
rosa_roxburghii	Rroxscaffold_6G00425680
rosa_rugosa	Rorug02G0601900 Rorug02G0602000
rosa_samantha	Rh3AG002200 Rh3BG001700 Rh3CG002000 Rh3DG002100
rosa_wichuraiana	Rw3G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	773
Acc36I	ACCTGC	1 cut(s)	773
AccB7I	CCANNNNNTGG	2 cut(s)	313, 575
AccI	GTMKAC	1 cut(s)	703
AccII	CGCG	4 cut(s)	47, 200, 708, 828
AciI	CCGC	3 cut(s)	45, 198, 456
AclWI	GGATC	2 cut(s)	92, 823
AcsI	RAATTY	3 cut(s)	432, 681, 884
AcuI	CTGAAG	2 cut(s)	917, 995
AcyI	GRCGYC	1 cut(s)	990
AfaI	GTAC	2 cut(s)	142, 557
AfiI	CCNNNNNNNGG	3 cut(s)	313, 331, 575
AflIII	ACRYGT	1 cut(s)	143
AgeI	ACCGGT	1 cut(s)	1003
AgsI	TTSAA	4 cut(s)	184, 529, 670, 795
AhdI	GACNNNNNGTC	2 cut(s)	408, 1069
AhlI	ACTAGT	1 cut(s)	137
AjnI	CCWGG	2 cut(s)	601, 715
AluBI	AGCT	7 cut(s)	29, 180, 289, 535, 541, 595, 638
AluI	AGCT	7 cut(s)	29, 180, 289, 535, 541, 595, 638
Alw26I	GTCTC	3 cut(s)	236, 395, 1077
AlwI	GGATC	2 cut(s)	92, 823
Ama87I	CYCGRG	1 cut(s)	189
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	4 cut(s)	202, 452, 458, 1082
ApoI	RAATTY	3 cut(s)	432, 681, 884
AseI	ATTAAT	1 cut(s)	477
AsiGI	ACCGGT	1 cut(s)	1003
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	4 cut(s)	75, 192, 327, 566
AsuHPI	GGTGA	4 cut(s)	346, 524, 894, 985
AvaI	CYCGRG	1 cut(s)	189
AvaII	GGWCC	3 cut(s)	75, 327, 566
BbvI	GCAGC	4 cut(s)	214, 439, 445, 1069
BccI	CCATC	6 cut(s)	163, 257, 290, 569, 607, 859
BciT130I	CCWGG	2 cut(s)	603, 717
BciVI	GTATCC	1 cut(s)	902
BcoDI	GTCTC	3 cut(s)	236, 395, 1077
BcuI	ACTAGT	1 cut(s)	137
BfaI	CTAG	2 cut(s)	138, 375
BfmI	CTRYAG	1 cut(s)	237
BfuAI	ACCTGC	1 cut(s)	773
BfuI	GTATCC	1 cut(s)	902
BisI	GCNGC	5 cut(s)	203, 453, 456, 459, 1083
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	5 cut(s)	204, 454, 457, 460, 1084
Bme1390I	CCNGG	2 cut(s)	603, 717
Bme18I	GGWCC	3 cut(s)	75, 327, 566
BmeRI	GACNNNNNGTC	2 cut(s)	408, 1069
BmeT110I	CYCGRG	1 cut(s)	189
BmgT120I	GGNCC	4 cut(s)	75, 192, 327, 566
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	603, 717
BmsI	GCATC	4 cut(s)	449, 531, 736, 757
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
Bpu10I	CCTNAGC	1 cut(s)	771
Bpu1102I	GCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	2 cut(s)	557, 1061
Bsa29I	ATCGAT	1 cut(s)	658
BsaAI	YACGTR	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	990
BsaJI	CCNNGG	3 cut(s)	330, 559, 715
BsaWI	WCCGGW	2 cut(s)	324, 1003
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bsc4I	CCNNNNNNNGG	3 cut(s)	313, 331, 575
Bse118I	RCCGGY	1 cut(s)	1003
Bse3DI	GCAATG	1 cut(s)	729
BseBI	CCWGG	2 cut(s)	603, 717
BseCI	ATCGAT	1 cut(s)	658
BseDI	CCNNGG	3 cut(s)	330, 559, 715
BseGI	GGATG	2 cut(s)	174, 725
BseLI	CCNNNNNNNGG	3 cut(s)	313, 331, 575
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	2 cut(s)	785, 999
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	4 cut(s)	214, 439, 445, 1069
Bsh1236I	CGCG	4 cut(s)	47, 200, 708, 828
BshFI	GGCC	1 cut(s)	194
BshTI	ACCGGT	1 cut(s)	1003
BshVI	ATCGAT	1 cut(s)	658
BsiHKCI	CYCGRG	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	325, 1004
BslFI	GGGAC	3 cut(s)	287, 706, 935
BslI	CCNNNNNNNGG	3 cut(s)	313, 331, 575
BsmAI	GTCTC	3 cut(s)	236, 395, 1077
BsmBI	CGTCTC	1 cut(s)	395
BsmFI	GGGAC	3 cut(s)	287, 706, 935
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	189
Bsp143I	GATC	5 cut(s)	84, 655, 659, 815, 906
Bsp1720I	GCTNAGC	1 cut(s)	5
BspACI	CCGC	3 cut(s)	45, 198, 456
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	2 cut(s)	784, 998
BspDI	ATCGAT	1 cut(s)	658
BspFNI	CGCG	4 cut(s)	47, 200, 708, 828
BspLI	GGNNCC	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	773
BspPI	GGATC	2 cut(s)	92, 823
BsrDI	GCAATG	1 cut(s)	729
BsrFI	RCCGGY	1 cut(s)	1003
BssAI	RCCGGY	1 cut(s)	1003
BssECI	CCNNGG	3 cut(s)	330, 559, 715
BssMI	GATC	5 cut(s)	84, 655, 659, 815, 906
BssNAI	GTATAC	1 cut(s)	704
BssNI	GRCGYC	1 cut(s)	990
BssT1I	CCWWGG	2 cut(s)	330, 559
Bst1107I	GTATAC	1 cut(s)	704
Bst2UI	CCWGG	2 cut(s)	603, 717
Bst4CI	ACNGT	2 cut(s)	22, 1090
Bst6I	CTCTTC	2 cut(s)	44, 978
BstACI	GRCGYC	1 cut(s)	990
BstBAI	YACGTR	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	543, 830
BstDEI	CTNAG	4 cut(s)	5, 771, 874, 985
BstF5I	GGATG	2 cut(s)	174, 725
BstFNI	CGCG	4 cut(s)	47, 200, 708, 828
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	5 cut(s)	87, 658, 662, 818, 909
BstMAI	GTCTC	3 cut(s)	236, 395, 1077
BstMBI	GATC	5 cut(s)	84, 655, 659, 815, 906
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 458
BstNI	CCWGG	2 cut(s)	603, 717
BstSCI	CCNGG	2 cut(s)	601, 715
BstSFI	CTRYAG	1 cut(s)	237
BstUI	CGCG	4 cut(s)	47, 200, 708, 828
BstV1I	GCAGC	4 cut(s)	214, 439, 445, 1069
BstX2I	RGATCY	1 cut(s)	815
BstXI	CCANNNNNNTGG	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	815
BstZ17I	GTATAC	1 cut(s)	704
Bsu15I	ATCGAT	1 cut(s)	658
BsuI	GTATCC	1 cut(s)	902
BsuRI	GGCC	1 cut(s)	194
BsuTUI	ATCGAT	1 cut(s)	658
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	174, 725
BtsIMutI	CAGTG	2 cut(s)	27, 817
BveI	ACCTGC	1 cut(s)	773
Cac8I	GCNNGC	2 cut(s)	543, 830
CfoI	GCGC	1 cut(s)	202
Cfr10I	RCCGGY	1 cut(s)	1003
Cfr13I	GGNCC	4 cut(s)	75, 192, 327, 566
ClaI	ATCGAT	1 cut(s)	658
CseI	GACGC	2 cut(s)	412, 979
Csp6I	GTAC	2 cut(s)	141, 556
CspAI	ACCGGT	1 cut(s)	1003
CviAII	CATG	3 cut(s)	156, 620, 913
CviQI	GTAC	2 cut(s)	141, 556
DdeI	CTNAG	4 cut(s)	5, 771, 874, 985
DpnI	GATC	5 cut(s)	86, 657, 661, 817, 908
DpnII	GATC	5 cut(s)	84, 655, 659, 815, 906
DraI	TTTAAA	1 cut(s)	468
DriI	GACNNNNNGTC	2 cut(s)	408, 1069
Eam1104I	CTCTTC	2 cut(s)	44, 978
Eam1105I	GACNNNNNGTC	2 cut(s)	408, 1069
EarI	CTCTTC	2 cut(s)	44, 978
Eco130I	CCWWGG	2 cut(s)	330, 559
Eco32I	GATATC	2 cut(s)	551, 608
Eco47I	GGWCC	3 cut(s)	75, 327, 566
Eco57I	CTGAAG	2 cut(s)	917, 995
Eco88I	CYCGRG	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	75
EcoRII	CCWGG	2 cut(s)	601, 715
EcoRV	GATATC	2 cut(s)	551, 608
EcoT14I	CCWWGG	2 cut(s)	330, 559
ErhI	CCWWGG	2 cut(s)	330, 559
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	3 cut(s)	159, 623, 916
FaqI	GGGAC	3 cut(s)	287, 706, 935
FatI	CATG	3 cut(s)	155, 619, 912
FblI	GTMKAC	1 cut(s)	703
Fnu4HI	GCNGC	5 cut(s)	203, 453, 456, 459, 1083
FokI	GGATG	2 cut(s)	181, 732
Fsp4HI	GCNGC	5 cut(s)	203, 453, 456, 459, 1083
FspBI	CTAG	2 cut(s)	138, 375
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	5 cut(s)	203, 453, 456, 459, 1083
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	2 cut(s)	325, 1004
HgaI	GACGC	2 cut(s)	412, 979
HhaI	GCGC	1 cut(s)	202
Hin1I	GRCGYC	1 cut(s)	990
Hin1II	CATG	3 cut(s)	159, 623, 916
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HinfI	GANTC	3 cut(s)	233, 739, 1015
HpaII	CCGG	2 cut(s)	325, 1004
HphI	GGTGA	4 cut(s)	346, 524, 894, 985
Hpy166II	GTNNAC	3 cut(s)	143, 566, 704
Hpy188I	TCNGA	4 cut(s)	414, 612, 1014, 1063
Hpy188III	TCNNGA	7 cut(s)	211, 314, 526, 743, 773, 895, 1019
Hpy8I	GTNNAC	3 cut(s)	143, 566, 704
HpyAV	CCTTC	2 cut(s)	512, 523
HpyCH4III	ACNGT	2 cut(s)	22, 1090
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	5 cut(s)	117, 440, 912, 966, 1085
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 458
HpyF3I	CTNAG	4 cut(s)	5, 771, 874, 985
HpySE526I	ACGT	1 cut(s)	145
Hsp92I	GRCGYC	1 cut(s)	990
Hsp92II	CATG	3 cut(s)	159, 623, 916
HspAI	GCGC	1 cut(s)	200
Kzo9I	GATC	5 cut(s)	84, 655, 659, 815, 906
LmnI	GCTCC	4 cut(s)	327, 532, 616, 635
Lsp1109I	GCAGC	4 cut(s)	214, 439, 445, 1069
LweI	GCATC	4 cut(s)	449, 531, 736, 757
MaeI	CTAG	2 cut(s)	138, 375
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	4 cut(s)	352, 751, 900, 991
MalI	GATC	5 cut(s)	86, 657, 661, 817, 908
MboI	GATC	5 cut(s)	84, 655, 659, 815, 906
MboII	GAAGA	5 cut(s)	61, 244, 584, 595, 965
MfeI	CAATTG	1 cut(s)	59
MflI	RGATCY	1 cut(s)	815
MluCI	AATT	6 cut(s)	59, 432, 478, 664, 681, 884
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	2 cut(s)	613, 628
MnlI	CCTC	8 cut(s)	166, 205, 216, 236, 418, 421, 508, 862
MseI	TTAA	2 cut(s)	467, 477
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	2 cut(s)	325, 1004
MspR9I	CCNGG	2 cut(s)	603, 717
MunI	CAATTG	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	2 cut(s)	603, 717
MvnI	CGCG	4 cut(s)	47, 200, 708, 828
MwoI	GCNNNNNNNGC	2 cut(s)	99, 458
NdeII	GATC	5 cut(s)	84, 655, 659, 815, 906
NlaIII	CATG	3 cut(s)	159, 623, 916
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	4 cut(s)	352, 751, 900, 991
PaqCI	CACCTGC	1 cut(s)	773
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	739, 1015
PflMI	CCANNNNNTGG	2 cut(s)	313, 575
PinAI	ACCGGT	1 cut(s)	1003
PkrI	GCNGC	5 cut(s)	204, 454, 457, 460, 1084
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Ppu21I	YACGTR	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	75
PshBI	ATTAAT	1 cut(s)	477
Psp5II	RGGWCCY	1 cut(s)	75
Psp6I	CCWGG	2 cut(s)	601, 715
PspGI	CCWGG	2 cut(s)	601, 715
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	4 cut(s)	75, 192, 327, 566
PspPPI	RGGWCCY	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	815
RsaI	GTAC	2 cut(s)	142, 557
RsaNI	GTAC	2 cut(s)	141, 556
SaqAI	TTAA	2 cut(s)	467, 477
SatI	GCNGC	5 cut(s)	203, 453, 456, 459, 1083
Sau3AI	GATC	5 cut(s)	84, 655, 659, 815, 906
Sau96I	GGNCC	4 cut(s)	75, 192, 327, 566
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	603, 717
SfaNI	GCATC	4 cut(s)	449, 531, 736, 757
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	3 cut(s)	75, 327, 566
SmlI	CTYRAG	2 cut(s)	536, 1076
SmoI	CTYRAG	2 cut(s)	536, 1076
SpeI	ACTAGT	1 cut(s)	137
Sse9I	AATT	6 cut(s)	59, 432, 478, 664, 681, 884
SsiI	CCGC	3 cut(s)	45, 198, 456
SspMI	CTAG	2 cut(s)	138, 375
StyD4I	CCNGG	2 cut(s)	601, 715
StyI	CCWWGG	2 cut(s)	330, 559
TaaI	ACNGT	2 cut(s)	22, 1090
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	2 cut(s)	255, 658
TasI	AATT	6 cut(s)	59, 432, 478, 664, 681, 884
TatI	WGTACW	1 cut(s)	140
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	2 cut(s)	739, 1015
Tru1I	TTAA	2 cut(s)	467, 477
Tru9I	TTAA	2 cut(s)	467, 477
TscAI	CASTG	2 cut(s)	27, 817
TseFI	GTSAC	4 cut(s)	352, 751, 900, 991
TseI	GCWGC	4 cut(s)	202, 452, 458, 1082
Tsp45I	GTSAC	4 cut(s)	352, 751, 900, 991
TspDTI	ATGAA	2 cut(s)	238, 718
TspRI	CASTG	2 cut(s)	27, 817
Van91I	CCANNNNNTGG	2 cut(s)	313, 575
VpaK11BI	GGWCC	3 cut(s)	75, 327, 566
VspI	ATTAAT	1 cut(s)	477
XapI	RAATTY	3 cut(s)	432, 681, 884
XmiI	GTMKAC	1 cut(s)	703
XspI	CTAG	2 cut(s)	138, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.