Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006014

Physical Location & Seq

Genomic Coordinates Reverse (-)

49719214 .. 49723424

Gene Structure 4211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025996

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGCTGAGCAGAGCAACAGCCAGAGCATCAAACCACTTGTTCTTCAAGAACAAGAATTCTCAGTTACTAGGGCTCAGCAATAATCTCTCATATGCTGCTTCAAACCCTGTATCTAACTTTGTGAGCATCACATGGAACAACAACAACACCTCTAGAATGTCAAAAATGAAGAGTTTCACAACCCGAGCAACCGCGCAGCCTCTCAAGAATGCTGATGAGCTCATCGACTCTGTCGAGACGTTCATCTTCGATTGCGATGGAGTTATATGGAAAGGTGATAAGCTGATAGATGGCGTCCCAGAAACTCTTGATATGCTACGGTCCAAGGGCAAAAGATTAGTCTTTGTTACCAACAATTCAACAAAATCTAGGAAGCAATATGGTAAAAAGTTTGAGACACTTGGTCTGAATGTCAGTGAGGAAGAAATTTTTGCTTCATCTTTTGCTGCTGCTGCCTATTTGAAGTCCATAAATTTTCCAAAAGATAAAAAGGTTTATGTGATTGGTGAGGATGGTATCTTGAAGGAGCTTGAGCTTGCTGGATTTCAATACCTTGGTGGACCAGAAGACGGAGAGAAGAAGATAGAGCTGAAGCCTGGATTTCTGATGGAGCATGATGAGAGCGTTGGAGCTGTTGTGGTTGGATTTGATCGATATGTCAACTACTTCAAAATTCAGTATGGGACACTCTGTATACGTGAAAACCCTGGATGTCTTTTCATTGCAACAAATCGTGATGCTGTCACTCATCTCACAGATGCTCAGGAATGGGCAGGTGGTGGTTCCATGGTTGGTGCTATCCAGGGATCTACTCAGCGTGAGCCACTGGTTGTGGGAAAGCCCTCCACATTTATGATGGACTACTTAGCAAATGAATTTGGCATACTGAAGTCACAAATTTGCATGGTCGGGGACAGATTGGATACTGATATTCTGTTTGGACAAAATGGTGGTTGCAAAACTCTTCTTGTTCTCTCAGGTGTCACCACTTTACCAGTGCTTCAAAATCCCAGCAACACCATACAACCAGATTTTTACACCAACAAGATCTCAGACTTTTTGTCTCTCAAGGCTGCAACCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

362

Amino Acids

39.75

Weight (kDa)

6.84

Isoelectric Point (pI)

24.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	79 - 318	7.3e-14	haloacid dehalogenase-like hydrolase
Hydrolase_6	PF13344	81 - 183	2.3e-35	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	278 - 352	2.2e-20	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36700 AT5G36700 AT5G36700 AT5G36700 AT5G36790 AT5G36790 AT5G36790
fragaria_vesca	FvH4_6g00110 FvH4_6g00110
malus_domestica	MD04G1248400.v1.1 MD12G1262300.v1.1
prunus_persica	Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1
pyrus_communis	pycom04g21910 pycom12g24170
rosa_chinensis	RchiOBHm_Chr3g0447461
rosa_laevigata	RLG00000025996
rosa_roxburghii	Rroxscaffold_6G00425680
rosa_rugosa	Rorug02G0601900 Rorug02G0602000
rosa_samantha	Rh3AG002200 Rh3BG001700 Rh3CG002000 Rh3DG002100
rosa_wichuraiana	Rw3G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	764
Acc36I	ACCTGC	1 cut(s)	764
AccI	GTMKAC	1 cut(s)	694
AccII	CGCG	1 cut(s)	194
AciI	CCGC	1 cut(s)	192
AclWI	GGATC	1 cut(s)	814
AcsI	RAATTY	6 cut(s)	55, 426, 472, 672, 875, 897
AcuI	CTGAAG	2 cut(s)	611, 908
AcyI	GRCGYC	1 cut(s)	294
AfiI	CCNNNNNNNGG	1 cut(s)	569
AgsI	TTSAA	8 cut(s)	46, 102, 360, 463, 523, 548, 670, 1004
AhdI	GACNNNNNGTC	2 cut(s)	402, 1060
AjnI	CCWGG	3 cut(s)	595, 706, 801
AluBI	AGCT	6 cut(s)	220, 283, 529, 535, 589, 632
AluI	AGCT	6 cut(s)	220, 283, 529, 535, 589, 632
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	3 cut(s)	230, 389, 1068
AlwI	GGATC	1 cut(s)	814
Ama87I	CYCGRG	1 cut(s)	183
ApeKI	GCWGC	6 cut(s)	95, 196, 446, 449, 452, 1073
ApoI	RAATTY	6 cut(s)	55, 426, 472, 672, 875, 897
ArsI	GACNNNNNNTTYG	2 cut(s)	324, 356
Asp700I	GAANNNNTTC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	2 cut(s)	321, 560
AsuHPI	GGTGA	3 cut(s)	287, 518, 976
AvaI	CYCGRG	1 cut(s)	183
AvaII	GGWCC	2 cut(s)	321, 560
BanII	GRGCYC	2 cut(s)	75, 222
BbsI	GAAGAC	1 cut(s)	573
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	6 cut(s)	82, 208, 433, 436, 439, 1060
BccI	CCATC	5 cut(s)	251, 284, 506, 601, 850
BciT130I	CCWGG	3 cut(s)	597, 708, 803
BciVI	GTATCC	1 cut(s)	916
BcoDI	GTCTC	3 cut(s)	230, 389, 1068
BfaI	CTAG	3 cut(s)	68, 153, 369
BfuAI	ACCTGC	1 cut(s)	764
BfuI	GTATCC	1 cut(s)	916
BglII	AGATCT	1 cut(s)	1047
BisI	GCNGC	6 cut(s)	96, 197, 447, 450, 453, 1074
BlpI	GCTNAGC	2 cut(s)	5, 74
BlsI	GCNGC	6 cut(s)	97, 198, 448, 451, 454, 1075
Bme1390I	CCNGG	3 cut(s)	597, 708, 803
Bme18I	GGWCC	2 cut(s)	321, 560
BmeRI	GACNNNNNGTC	2 cut(s)	402, 1060
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	2 cut(s)	321, 560
BmiI	GGNNCC	1 cut(s)	784
BmrFI	CCNGG	3 cut(s)	597, 708, 803
BmsI	GCATC	4 cut(s)	35, 135, 727, 748
BpiI	GAAGAC	1 cut(s)	573
Bpu10I	CCTNAGC	1 cut(s)	762
Bpu1102I	GCTNAGC	2 cut(s)	5, 74
BpuEI	CTTGAG	3 cut(s)	188, 551, 1052
Bsa29I	ATCGAT	1 cut(s)	652
BsaAI	YACGTR	1 cut(s)	698
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	5 cut(s)	324, 553, 706, 786, 802
BsaXI	ACNNNNNCTCC	2 cut(s)	621, 651
Bsc4I	CCNNNNNNNGG	1 cut(s)	569
Bse1I	ACTGG	2 cut(s)	831, 995
Bse3DI	GCAATG	1 cut(s)	720
BseBI	CCWGG	3 cut(s)	597, 708, 803
BseCI	ATCGAT	1 cut(s)	652
BseDI	CCNNGG	5 cut(s)	324, 553, 706, 786, 802
BseGI	GGATG	2 cut(s)	517, 716
BseLI	CCNNNNNNNGG	1 cut(s)	569
BseMI	GCAATG	1 cut(s)	720
BseMII	CTCAG	6 cut(s)	74, 88, 776, 827, 990, 1065
BseNI	ACTGG	2 cut(s)	831, 995
BseXI	GCAGC	6 cut(s)	82, 208, 433, 436, 439, 1060
BseYI	CCCAGC	1 cut(s)	1010
Bsh1236I	CGCG	1 cut(s)	194
BshVI	ATCGAT	1 cut(s)	652
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	183
BslFI	GGGAC	3 cut(s)	281, 697, 926
BslI	CCNNNNNNNGG	1 cut(s)	569
BsmAI	GTCTC	3 cut(s)	230, 389, 1068
BsmBI	CGTCTC	1 cut(s)	230
BsmFI	GGGAC	3 cut(s)	281, 697, 926
BsmI	GAATGC	1 cut(s)	214
BsoBI	CYCGRG	1 cut(s)	183
Bsp1286I	GDGCHC	2 cut(s)	75, 222
Bsp143I	GATC	3 cut(s)	649, 806, 1047
Bsp1720I	GCTNAGC	2 cut(s)	5, 74
Bsp19I	CCATGG	1 cut(s)	786
BspACI	CCGC	1 cut(s)	192
BspCNI	CTCAG	6 cut(s)	73, 87, 775, 826, 989, 1064
BspDI	ATCGAT	1 cut(s)	652
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	784
BspMI	ACCTGC	1 cut(s)	764
BspPI	GGATC	1 cut(s)	814
BsrDI	GCAATG	1 cut(s)	720
BsrI	ACTGG	2 cut(s)	831, 995
BssECI	CCNNGG	5 cut(s)	324, 553, 706, 786, 802
BssMI	GATC	3 cut(s)	649, 806, 1047
BssNAI	GTATAC	1 cut(s)	695
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	3 cut(s)	324, 553, 786
Bst1107I	GTATAC	1 cut(s)	695
Bst2UI	CCWGG	3 cut(s)	597, 708, 803
Bst4CI	ACNGT	2 cut(s)	321, 1081
Bst6I	CTCTTC	2 cut(s)	164, 969
BstACI	GRCGYC	1 cut(s)	294
BstBAI	YACGTR	1 cut(s)	698
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	8 cut(s)	5, 60, 74, 762, 813, 865, 976, 1051
BstDSI	CCRYGG	1 cut(s)	786
BstF5I	GGATG	2 cut(s)	517, 716
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	3 cut(s)	652, 809, 1050
BstMAI	GTCTC	3 cut(s)	230, 389, 1068
BstMBI	GATC	3 cut(s)	649, 806, 1047
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	3 cut(s)	597, 708, 803
BstSCI	CCNGG	3 cut(s)	595, 706, 801
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	6 cut(s)	82, 208, 433, 436, 439, 1060
BstV2I	GAAGAC	1 cut(s)	573
BstX2I	RGATCY	2 cut(s)	806, 1047
BstYI	RGATCY	2 cut(s)	806, 1047
BstZ17I	GTATAC	1 cut(s)	695
Bsu15I	ATCGAT	1 cut(s)	652
BsuI	GTATCC	1 cut(s)	916
BsuTUI	ATCGAT	1 cut(s)	652
BtgI	CCRYGG	1 cut(s)	786
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	517, 716
BtsIMutI	CAGTG	3 cut(s)	421, 824, 1002
BveI	ACCTGC	1 cut(s)	764
Cac8I	GCNNGC	1 cut(s)	537
CfoI	GCGC	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	321, 560
ClaI	ATCGAT	1 cut(s)	652
CseI	GACGC	1 cut(s)	283
CviAII	CATG	4 cut(s)	132, 614, 787, 904
DdeI	CTNAG	8 cut(s)	5, 60, 74, 762, 813, 865, 976, 1051
DpnI	GATC	3 cut(s)	651, 808, 1049
DpnII	GATC	3 cut(s)	649, 806, 1047
DriI	GACNNNNNGTC	2 cut(s)	402, 1060
Eam1104I	CTCTTC	2 cut(s)	164, 969
Eam1105I	GACNNNNNGTC	2 cut(s)	402, 1060
EarI	CTCTTC	2 cut(s)	164, 969
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	3 cut(s)	324, 553, 786
Eco24I	GRGCYC	2 cut(s)	75, 222
Eco47I	GGWCC	2 cut(s)	321, 560
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	2 cut(s)	611, 908
Eco88I	CYCGRG	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	55
EcoRII	CCWGG	3 cut(s)	595, 706, 801
EcoT14I	CCWWGG	3 cut(s)	324, 553, 786
EcoT38I	GRGCYC	2 cut(s)	75, 222
ErhI	CCWWGG	3 cut(s)	324, 553, 786
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	4 cut(s)	135, 617, 790, 907
FaqI	GGGAC	3 cut(s)	281, 697, 926
FatI	CATG	4 cut(s)	131, 613, 786, 903
FauNDI	CATATG	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	694
Fnu4HI	GCNGC	6 cut(s)	96, 197, 447, 450, 453, 1074
FokI	GGATG	2 cut(s)	524, 723
FriOI	GRGCYC	2 cut(s)	75, 222
Fsp4HI	GCNGC	6 cut(s)	96, 197, 447, 450, 453, 1074
FspBI	CTAG	3 cut(s)	68, 153, 369
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	6 cut(s)	96, 197, 447, 450, 453, 1074
GsaI	CCCAGC	1 cut(s)	1014
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	4 cut(s)	135, 617, 790, 907
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HinfI	GANTC	1 cut(s)	227
HphI	GGTGA	3 cut(s)	287, 518, 976
Hpy166II	GTNNAC	3 cut(s)	560, 661, 695
Hpy188I	TCNGA	3 cut(s)	408, 606, 1054
Hpy188III	TCNNGA	8 cut(s)	46, 153, 205, 235, 308, 520, 734, 764
Hpy8I	GTNNAC	3 cut(s)	560, 661, 695
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	2 cut(s)	321, 1081
HpyCH4IV	ACGT	2 cut(s)	239, 697
HpyCH4V	TGCA	4 cut(s)	725, 903, 957, 1076
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	8 cut(s)	5, 60, 74, 762, 813, 865, 976, 1051
HpySE526I	ACGT	2 cut(s)	239, 697
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	4 cut(s)	135, 617, 790, 907
HspAI	GCGC	1 cut(s)	194
Kzo9I	GATC	3 cut(s)	649, 806, 1047
LmnI	GCTCC	3 cut(s)	526, 610, 629
Lsp1109I	GCAGC	6 cut(s)	82, 208, 433, 436, 439, 1060
LweI	GCATC	4 cut(s)	35, 135, 727, 748
MaeI	CTAG	3 cut(s)	68, 153, 369
MaeII	ACGT	2 cut(s)	239, 697
MaeIII	GTNAC	5 cut(s)	63, 346, 742, 891, 982
MalI	GATC	3 cut(s)	651, 808, 1049
MboI	GATC	3 cut(s)	649, 806, 1047
MboII	GAAGA	8 cut(s)	34, 181, 238, 434, 578, 589, 592, 956
MflI	RGATCY	2 cut(s)	806, 1047
MhlI	GDGCHC	2 cut(s)	75, 222
MluCI	AATT	7 cut(s)	55, 355, 426, 472, 672, 875, 897
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	2 cut(s)	607, 622
MnlI	CCTC	5 cut(s)	160, 210, 412, 502, 853
MroXI	GAANNNNTTC	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	851
MspR9I	CCNGG	3 cut(s)	597, 708, 803
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	3 cut(s)	597, 708, 803
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	452
NcoI	CCATGG	1 cut(s)	786
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	3 cut(s)	649, 806, 1047
NlaIII	CATG	4 cut(s)	135, 617, 790, 907
NlaIV	GGNNCC	1 cut(s)	784
NmuCI	GTSAC	3 cut(s)	742, 891, 982
PaqCI	CACCTGC	1 cut(s)	764
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	173
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	6 cut(s)	97, 198, 448, 451, 454, 1075
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
Ppu21I	YACGTR	1 cut(s)	698
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	3 cut(s)	595, 706, 801
PspFI	CCCAGC	1 cut(s)	1010
PspGI	CCWGG	3 cut(s)	595, 706, 801
PspN4I	GGNNCC	1 cut(s)	784
PspPI	GGNCC	2 cut(s)	321, 560
PsuI	RGATCY	2 cut(s)	806, 1047
PsyI	GACNNNGTC	1 cut(s)	230
RseI	CAYNNNNRTG	1 cut(s)	851
SacI	GAGCTC	1 cut(s)	222
SatI	GCNGC	6 cut(s)	96, 197, 447, 450, 453, 1074
Sau3AI	GATC	3 cut(s)	649, 806, 1047
Sau96I	GGNCC	2 cut(s)	321, 560
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	3 cut(s)	597, 708, 803
SduI	GDGCHC	2 cut(s)	75, 222
SfaNI	GCATC	4 cut(s)	35, 135, 727, 748
SinI	GGWCC	2 cut(s)	321, 560
SmiMI	CAYNNNNRTG	1 cut(s)	851
SmlI	CTYRAG	3 cut(s)	203, 530, 1067
SmoI	CTYRAG	3 cut(s)	203, 530, 1067
Sse9I	AATT	7 cut(s)	55, 355, 426, 472, 672, 875, 897
SsiI	CCGC	1 cut(s)	192
SspMI	CTAG	3 cut(s)	68, 153, 369
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	595, 706, 801
StyI	CCWWGG	3 cut(s)	324, 553, 786
TaaI	ACNGT	2 cut(s)	321, 1081
TaiI	ACGT	2 cut(s)	242, 700
TaqI	TCGA	4 cut(s)	225, 234, 249, 652
TasI	AATT	7 cut(s)	55, 355, 426, 472, 672, 875, 897
TscAI	CASTG	3 cut(s)	421, 831, 1002
TseFI	GTSAC	3 cut(s)	742, 891, 982
TseI	GCWGC	6 cut(s)	95, 196, 446, 449, 452, 1073
Tsp45I	GTSAC	3 cut(s)	742, 891, 982
TspDTI	ATGAA	5 cut(s)	182, 232, 426, 709, 888
TspGWI	ACGGA	1 cut(s)	585
TspRI	CASTG	3 cut(s)	421, 831, 1002
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	2 cut(s)	321, 560
XapI	RAATTY	6 cut(s)	55, 426, 472, 672, 875, 897
XbaI	TCTAGA	1 cut(s)	152
XcmI	CCANNNNNNNNNTGG	1 cut(s)	853
XmiI	GTMKAC	1 cut(s)	694
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	3 cut(s)	68, 153, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.