Rorug02G0601900

Phosphoglycolate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006014
Physical Location & Seq
Forward (+)
72049970 .. 72050730
761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0601900.1

Sequence Viewer

Length: 696 bp
ATGGGCAGGGTCCACTTTCGTGATGTGTACTTTGCATACCCGACTAGGCCCAATGTGATGATCTTCCGAGGCTTCTCAATGAATATTGAAGCTGGAAAATCTACGGCATTGGTGGGGCAAAGTGGGTCGGGTAAATCAACCATTATCGGACTGATCGAGAGATTTTATGATCCAATCCACGGCGTGGTGGAGATCGACGATCATGCTGTGAAGTCGTACCACCTTAGAGAAAACATTGTATTTGGAGCGTCAAATAACATCGAGGAAACTATGATCATTGAGGCAGCAAGGGCGGCCAATGCTCATGATTTCATCAGCGGGTTAAAGGACGGGTACAACACATCGTGTGGGGGTGGAAGATTGCAACTCTCTGGGGGTCAGAAGCAACGCATTGCTATAGCAAGAGTTATACTGAGAAACCCTGCAGTGTTGTTACTTGACGAGGCAACCAGCGCGCTAGATAGCCATTCAGAGAAGGTGGTTCAAGATGCGCTGGAGCACGTCATGGTGGGGAGGACCAGTGTCGTAGTGGCACACAGGTTGAGTACCATACAGAACTGCGACCTCACTACTGTGCTTAATAAAGGAAAGGTAGTGGAGAATGGGTCTCACTCTTCTCTTTTGGCCAAGGGACCTTCAGGAGCTTATTGCTCCTTGGTCAATTTCACAAGAAGTACACAATCTTCAGATGATTAA

Protein Analysis

231

Amino Acids

24.96

Weight (kDa)

7.13

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 23 - 151 2.6e-25 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 184
AccII CGCG 1 cut(s) 455
AciI CCGC 2 cut(s) 293, 318
AclWI GGATC 1 cut(s) 164
AcoI YGGCCR 2 cut(s) 294, 624
AcuI CTGAAG 2 cut(s) 621, 669
AdeI CACNNNGTG 2 cut(s) 184, 345
AfaI GTAC 5 cut(s) 29, 218, 335, 547, 676
AfiI CCNNNNNNNGG 2 cut(s) 179, 184
AgsI TTSAA 2 cut(s) 89, 485
AjiI CACGTC 1 cut(s) 502
AleI CACNNNNGTG 2 cut(s) 18, 572
AluBI AGCT 2 cut(s) 92, 644
AluI AGCT 2 cut(s) 92, 644
Alw21I GWGCWC 1 cut(s) 501
Alw26I GTCTC 1 cut(s) 612
AlwI GGATC 1 cut(s) 164
AoxI GGCC 3 cut(s) 47, 294, 624
ApeKI GCWGC 1 cut(s) 284
AspLEI GCGC 3 cut(s) 455, 457, 493
AspS9I GGNCC 4 cut(s) 10, 48, 516, 632
AvaII GGWCC 3 cut(s) 10, 516, 632
BalI TGGCCA 1 cut(s) 626
BarI GAAGNNNNNNTAC 1 cut(s) 667
Bbv12I GWGCWC 1 cut(s) 501
BbvI GCAGC 1 cut(s) 296
BceAI ACGGC 2 cut(s) 120, 196
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BclI TGATCA 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 612
BfaI CTAG 2 cut(s) 45, 458
BfmI CTRYAG 2 cut(s) 396, 423
BisI GCNGC 2 cut(s) 285, 294
BlsI GCNGC 2 cut(s) 286, 295
Bme18I GGWCC 3 cut(s) 10, 516, 632
BmgBI CACGTC 1 cut(s) 502
BmgT120I GGNCC 4 cut(s) 10, 48, 516, 632
BmiI GGNNCC 2 cut(s) 11, 633
BmsI GCATC 1 cut(s) 478
BoxI GACNNNNGTC 1 cut(s) 521
BpmI CTGGAG 1 cut(s) 515
BsaI GGTCTC 1 cut(s) 612
BsaJI CCNNGG 4 cut(s) 67, 178, 627, 654
BsaXI ACNNNNNCTCC 4 cut(s) 505, 535, 590, 620
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 184
Bse1I ACTGG 1 cut(s) 519
Bse3DI GCAATG 1 cut(s) 390
BseDI CCNNGG 4 cut(s) 67, 178, 627, 654
BseLI CCNNNNNNNGG 2 cut(s) 179, 184
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 1 cut(s) 404
BseNI ACTGG 1 cut(s) 519
BsePI GCGCGC 1 cut(s) 453
BseXI GCAGC 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 455
BshFI GGCC 3 cut(s) 49, 296, 626
BsiHKAI GWGCWC 1 cut(s) 501
BslFI GGGAC 1 cut(s) 645
BslI CCNNNNNNNGG 2 cut(s) 179, 184
BsmAI GTCTC 1 cut(s) 612
BsmFI GGGAC 1 cut(s) 645
BsnI GGCC 3 cut(s) 49, 296, 626
Bso31I GGTCTC 1 cut(s) 612
Bsp1286I GDGCHC 1 cut(s) 501
Bsp143I GATC 6 cut(s) 60, 153, 169, 192, 199, 273
BspACI CCGC 2 cut(s) 293, 318
BspANI GGCC 3 cut(s) 49, 296, 626
BspCNI CTCAG 1 cut(s) 405
BspFNI CGCG 1 cut(s) 455
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 11, 633
BspMAI CTGCAG 1 cut(s) 427
BspPI GGATC 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 612
BsrDI GCAATG 1 cut(s) 390
BsrI ACTGG 1 cut(s) 519
BssECI CCNNGG 4 cut(s) 67, 178, 627, 654
BssHII GCGCGC 1 cut(s) 453
BssMI GATC 6 cut(s) 60, 153, 169, 192, 199, 273
BssT1I CCWWGG 2 cut(s) 627, 654
Bst4CI ACNGT 1 cut(s) 574
Bst6I CTCTTC 1 cut(s) 619
BstC8I GCNNGC 1 cut(s) 455
BstDEI CTNAG 2 cut(s) 224, 413
BstDSI CCRYGG 1 cut(s) 178
BstFNI CGCG 1 cut(s) 455
BstHHI GCGC 3 cut(s) 455, 457, 493
BstKTI GATC 6 cut(s) 63, 156, 172, 195, 202, 276
BstMAI GTCTC 1 cut(s) 612
BstMBI GATC 6 cut(s) 60, 153, 169, 192, 199, 273
BstMWI GCNNNNNNNGC 4 cut(s) 290, 293, 299, 452
BstPAI GACNNNNGTC 1 cut(s) 521
BstSFI CTRYAG 2 cut(s) 396, 423
BstUI CGCG 1 cut(s) 455
BstV1I GCAGC 1 cut(s) 296
BsuRI GGCC 3 cut(s) 49, 296, 626
BtgI CCRYGG 1 cut(s) 178
BtrI CACGTC 1 cut(s) 502
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 2 cut(s) 432, 526
Cac8I GCNNGC 1 cut(s) 455
CciI TCATGA 1 cut(s) 304
CfoI GCGC 3 cut(s) 455, 457, 493
Cfr13I GGNCC 4 cut(s) 10, 48, 516, 632
CseI GACGC 1 cut(s) 237
Csp6I GTAC 5 cut(s) 28, 217, 334, 546, 675
CviAII CATG 3 cut(s) 203, 305, 505
CviJI RGCY 7 cut(s) 49, 72, 92, 296, 465, 626, 644
CviKI_1 RGCY 7 cut(s) 49, 72, 92, 296, 465, 626, 644
CviQI GTAC 5 cut(s) 28, 217, 334, 546, 675
DdeI CTNAG 2 cut(s) 224, 413
DpnI GATC 6 cut(s) 62, 155, 171, 194, 201, 275
DpnII GATC 6 cut(s) 60, 153, 169, 192, 199, 273
DraIII CACNNNGTG 2 cut(s) 184, 345
EaeI YGGCCR 2 cut(s) 294, 624
Eam1104I CTCTTC 1 cut(s) 619
EarI CTCTTC 1 cut(s) 619
Eco130I CCWWGG 2 cut(s) 627, 654
Eco31I GGTCTC 1 cut(s) 612
Eco47I GGWCC 3 cut(s) 10, 516, 632
Eco57I CTGAAG 2 cut(s) 621, 669
EcoO109I RGGNCCY 1 cut(s) 632
EcoT14I CCWWGG 2 cut(s) 627, 654
ErhI CCWWGG 2 cut(s) 627, 654
FaeI CATG 3 cut(s) 206, 308, 508
FaiI YATR 9 cut(s) 37, 168, 204, 272, 306, 398, 410, 506, 551
FaqI GGGAC 1 cut(s) 645
FatI CATG 3 cut(s) 202, 304, 504
FauI CCCGC 1 cut(s) 311
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 2 cut(s) 285, 294
Fsp4HI GCNGC 2 cut(s) 285, 294
FspBI CTAG 2 cut(s) 45, 458
GlaI GCGC 3 cut(s) 454, 456, 492
GluI GCNGC 2 cut(s) 285, 294
GsuI CTGGAG 1 cut(s) 515
HaeIII GGCC 3 cut(s) 49, 296, 626
HgaI GACGC 1 cut(s) 237
HhaI GCGC 3 cut(s) 455, 457, 493
Hin1II CATG 3 cut(s) 206, 308, 508
Hin6I GCGC 3 cut(s) 453, 455, 491
HinP1I GCGC 3 cut(s) 453, 455, 491
Hpy166II GTNNAC 3 cut(s) 13, 28, 677
Hpy188I TCNGA 5 cut(s) 68, 149, 381, 472, 688
Hpy188III TCNNGA 5 cut(s) 20, 157, 305, 485, 639
Hpy8I GTNNAC 3 cut(s) 13, 28, 677
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 2 cut(s) 469, 645
HpyCH4III ACNGT 1 cut(s) 574
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 3 cut(s) 35, 364, 425
HpyF10VI GCNNNNNNNGC 4 cut(s) 290, 293, 299, 452
HpyF3I CTNAG 2 cut(s) 224, 413
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 3 cut(s) 206, 308, 508
HspAI GCGC 3 cut(s) 453, 455, 491
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 6 cut(s) 60, 153, 169, 192, 199, 273
LmnI GCTCC 4 cut(s) 245, 496, 641, 656
LpnPI CCDG 8 cut(s) 78, 357, 435, 463, 479, 523, 532, 624
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 1 cut(s) 478
MaeI CTAG 2 cut(s) 45, 458
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 1 cut(s) 432
MalI GATC 6 cut(s) 62, 155, 171, 194, 201, 275
MboI GATC 6 cut(s) 60, 153, 169, 192, 199, 273
MboII GAAGA 4 cut(s) 55, 369, 606, 675
MhlI GDGCHC 1 cut(s) 501
MlsI TGGCCA 1 cut(s) 626
MluCI AATT 1 cut(s) 661
MluNI TGGCCA 1 cut(s) 626
MnlI CCTC 6 cut(s) 62, 256, 274, 436, 507, 575
Mox20I TGGCCA 1 cut(s) 626
MscI TGGCCA 1 cut(s) 626
MseI TTAA 3 cut(s) 323, 579, 694
MslI CAYNNNNRTG 2 cut(s) 18, 572
Msp20I TGGCCA 1 cut(s) 626
MspA1I CMGCKG 1 cut(s) 318
MvnI CGCG 1 cut(s) 455
MwoI GCNNNNNNNGC 4 cut(s) 290, 293, 299, 452
NdeII GATC 6 cut(s) 60, 153, 169, 192, 199, 273
NlaIII CATG 3 cut(s) 206, 308, 508
NlaIV GGNNCC 2 cut(s) 11, 633
OliI CACNNNNGTG 2 cut(s) 18, 572
PagI TCATGA 1 cut(s) 304
PauI GCGCGC 1 cut(s) 453
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PflMI CCANNNNNTGG 1 cut(s) 184
PkrI GCNGC 2 cut(s) 286, 295
PpuMI RGGWCCY 1 cut(s) 632
PshAI GACNNNNGTC 1 cut(s) 521
Psp5II RGGWCCY 1 cut(s) 632
PspN4I GGNNCC 2 cut(s) 11, 633
PspPI GGNCC 4 cut(s) 10, 48, 516, 632
PspPPI RGGWCCY 1 cut(s) 632
PstI CTGCAG 1 cut(s) 427
PteI GCGCGC 1 cut(s) 453
RsaI GTAC 5 cut(s) 29, 218, 335, 547, 676
RsaNI GTAC 5 cut(s) 28, 217, 334, 546, 675
RseI CAYNNNNRTG 2 cut(s) 18, 572
SaqAI TTAA 3 cut(s) 323, 579, 694
SatI GCNGC 2 cut(s) 285, 294
Sau3AI GATC 6 cut(s) 60, 153, 169, 192, 199, 273
Sau96I GGNCC 4 cut(s) 10, 48, 516, 632
SduI GDGCHC 1 cut(s) 501
SetI ASST 9 cut(s) 94, 225, 480, 504, 542, 567, 594, 637, 646
SfaNI GCATC 1 cut(s) 478
SfcI CTRYAG 2 cut(s) 396, 423
SinI GGWCC 3 cut(s) 10, 516, 632
SmiMI CAYNNNNRTG 2 cut(s) 18, 572
Sse9I AATT 1 cut(s) 661
SsiI CCGC 2 cut(s) 293, 318
SspI AATATT 1 cut(s) 85
SspMI CTAG 2 cut(s) 45, 458
StyI CCWWGG 2 cut(s) 627, 654
TaaI ACNGT 1 cut(s) 574
TaiI ACGT 1 cut(s) 504
TaqI TCGA 3 cut(s) 156, 195, 261
TasI AATT 1 cut(s) 661
TatI WGTACW 2 cut(s) 27, 674
TauI GCSGC 1 cut(s) 296
Tru1I TTAA 3 cut(s) 323, 579, 694
Tru9I TTAA 3 cut(s) 323, 579, 694
TscAI CASTG 2 cut(s) 432, 526
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 2 cut(s) 95, 301
TspRI CASTG 2 cut(s) 432, 526
Van91I CCANNNNNTGG 1 cut(s) 184
VpaK11BI GGWCC 3 cut(s) 10, 516, 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
XspI CTAG 2 cut(s) 45, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.