Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006014

Physical Location & Seq

Genomic Coordinates Reverse (-)

30608697 .. 30614775

Gene Structure 6079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G364700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGCTGAGCAGAACAACAGTCATAGCAGCTTCTCTTTCAGTCTCTGCTGGTTCTGCAAACCCATCAAAATCAAACTATTCTCGATTGTTGGGGCTCAACAACAATCTCTCCTACACTGCTTCAAACCCTGTAATTGTATCATCCAACTCCAACTTTGCGAGCTTCGCATGGAACACCAGCAACAACAGTAAGTATACAAAGTCAAGAATGGAGAGGTTCACAACCCGGGCATCGCCGCAGCCCCTCACGAATGCTGATGAGCTCATAGGCTCTGTCCAGACTTTCATCTTCGACTGCGATGGAGTTATATGGAAAGGAGATAAGCTCATAGATGGCGTGCCAGAAACTCTTGATCTGCTACGGTCTAAGGGCAAAAGATTGGTTTTCGTTACCAACAACTCAACAAAGTCTCGGAAGCAATATGGTAAAAAGTTCGAGACACTTGGTCTGAATGTCAATGAGGAGGAAATTTTTGCATCATCTTTTGCTGCAGCTGCCTATTTGAAGTCCATTAATTTCCCTAAAGATAAAAAGGTTTATGTGATTGGTGAGGAAGGTATCTTGAAGGAGCTTGAGCTTGCTGGATATCAATATCTTGGTGGACCAGAAGACGGTGGGAAGAAGATAGATCTGAAGCCTGGATTTCTGATGGAGCATGATGAGAATGTTGGAGCTGTTGTGGTTGGGTTTGACCGAAATGTCAACTACTACAAAATTCAGTATGGGACACTTTGTATACGTGAAAACCCTGGATGTCTTTTCATTGCAACAAATCGTGATGCTGTCACTCATCTCACAGATGCTCAGGAATGGGCAGGTGGTGGTTCTATGGTTGGTGCTATCCGTGGATCTACTCAACGTGAGCCGCTGGTTGTGGGAAAACCTTCAACATTTATGATGGACTACTTGGCAAACGATCAGTTGAATTTAATCAATGACAGATTTGGCATCCTGAAGTCACAGATTTGCATGGTTGGGGACAGATTAGATACTGATATTCTGTTTGGACAAAATGGTGGTTGCAAAACTCTTCTTGTTCTCTCAGGTGTCACCACTTTATCAGTGCTTCAGAGTCCTAACAACTCCATACAACCAGATTTTTACACGAACAAGATTTCAGACTTTTTGTCTCTCAAGGCTACAACTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

384

Amino Acids

41.88

Weight (kDa)

8.12

Isoelectric Point (pI)

22.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36700 AT5G36700 AT5G36700 AT5G36700 AT5G36790 AT5G36790 AT5G36790
fragaria_vesca	FvH4_6g00110 FvH4_6g00110
malus_domestica	MD04G1248400.v1.1 MD12G1262300.v1.1
prunus_persica	Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1
pyrus_communis	pycom04g21910 pycom12g24170
rosa_chinensis	RchiOBHm_Chr3g0447461
rosa_laevigata	RLG00000025996
rosa_roxburghii	Rroxscaffold_6G00425680
rosa_rugosa	Rorug02G0601900 Rorug02G0602000
rosa_samantha	Rh3AG002200 Rh3BG001700 Rh3CG002000 Rh3DG002100
rosa_wichuraiana	Rw3G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	806
AasI	GACNNNNNNGTC	1 cut(s)	698
Acc36I	ACCTGC	1 cut(s)	806
AccI	GTMKAC	2 cut(s)	194, 736
AciI	CCGC	2 cut(s)	236, 866
AclWI	GGATC	1 cut(s)	856
AcsI	RAATTY	3 cut(s)	468, 714, 925
AcuI	CTGAAG	3 cut(s)	653, 974, 1052
AfiI	CCNNNNNNNGG	1 cut(s)	611
AgsI	TTSAA	5 cut(s)	123, 505, 565, 888, 925
AhdI	GACNNNNNGTC	2 cut(s)	444, 1126
AjnI	CCWGG	2 cut(s)	637, 748
AluBI	AGCT	8 cut(s)	29, 162, 262, 325, 494, 571, 577, 674
AluI	AGCT	8 cut(s)	29, 162, 262, 325, 494, 571, 577, 674
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	4 cut(s)	46, 414, 431, 1134
AlwI	GGATC	1 cut(s)	856
AlwNI	CAGNNNCTG	1 cut(s)	44
Ama87I	CYCGRG	1 cut(s)	225
ApeKI	GCWGC	5 cut(s)	26, 238, 488, 491, 494
ApoI	RAATTY	3 cut(s)	468, 714, 925
AseI	ATTAAT	1 cut(s)	513
Asp700I	GAANNNNTTC	1 cut(s)	883
AspS9I	GGNCC	1 cut(s)	602
AsuC2I	CCSGG	2 cut(s)	226, 227
AsuHPI	GGTGA	2 cut(s)	560, 1042
AvaI	CYCGRG	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	602
BanII	GRGCYC	2 cut(s)	96, 264
BbsI	GAAGAC	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	5 cut(s)	38, 250, 475, 481, 503
BccI	CCATC	5 cut(s)	70, 293, 326, 643, 892
BciT130I	CCWGG	2 cut(s)	639, 750
BcnI	CCSGG	2 cut(s)	226, 227
BcoDI	GTCTC	4 cut(s)	46, 414, 431, 1134
BfmI	CTRYAG	1 cut(s)	489
BfuAI	ACCTGC	1 cut(s)	806
BglII	AGATCT	1 cut(s)	628
BisI	GCNGC	7 cut(s)	27, 236, 239, 489, 492, 495, 866
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	7 cut(s)	28, 237, 240, 490, 493, 496, 867
Bme1390I	CCNGG	4 cut(s)	226, 227, 639, 750
Bme18I	GGWCC	1 cut(s)	602
BmeRI	GACNNNNNGTC	2 cut(s)	444, 1126
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	602
BmrFI	CCNGG	4 cut(s)	226, 227, 639, 750
BmsI	GCATC	5 cut(s)	239, 485, 769, 790, 957
BpiI	GAAGAC	1 cut(s)	615
BplI	GAGNNNNNCTC	2 cut(s)	309, 341
Bpu10I	CCTNAGC	1 cut(s)	804
Bpu1102I	GCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	2 cut(s)	593, 1118
BpuMI	CCSGG	2 cut(s)	226, 227
BsaAI	YACGTR	1 cut(s)	740
BsaJI	CCNNGG	3 cut(s)	225, 748, 844
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 663, 693
Bsc4I	CCNNNNNNNGG	1 cut(s)	611
Bse3DI	GCAATG	1 cut(s)	762
BseBI	CCWGG	2 cut(s)	639, 750
BseDI	CCNNGG	3 cut(s)	225, 748, 844
BseGI	GGATG	3 cut(s)	140, 758, 948
BseLI	CCNNNNNNNGG	1 cut(s)	611
BseMI	GCAATG	1 cut(s)	762
BseMII	CTCAG	2 cut(s)	818, 1056
BseRI	GAGGAG	1 cut(s)	476
BseXI	GCAGC	5 cut(s)	38, 250, 475, 481, 503
BsiHKAI	GWGCWC	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	226
BslFI	GGGAC	2 cut(s)	739, 992
BslI	CCNNNNNNNGG	1 cut(s)	611
BsmAI	GTCTC	4 cut(s)	46, 414, 431, 1134
BsmFI	GGGAC	2 cut(s)	739, 992
BsmI	GAATGC	1 cut(s)	256
BsoBI	CYCGRG	1 cut(s)	225
Bsp1286I	GDGCHC	2 cut(s)	96, 264
Bsp143I	GATC	4 cut(s)	352, 628, 848, 916
Bsp1720I	GCTNAGC	1 cut(s)	5
BspACI	CCGC	2 cut(s)	236, 866
BspCNI	CTCAG	2 cut(s)	817, 1055
BspMAI	CTGCAG	1 cut(s)	493
BspMI	ACCTGC	1 cut(s)	806
BspPI	GGATC	1 cut(s)	856
BsrDI	GCAATG	1 cut(s)	762
BssECI	CCNNGG	3 cut(s)	225, 748, 844
BssMI	GATC	4 cut(s)	352, 628, 848, 916
BssNAI	GTATAC	2 cut(s)	195, 737
Bst1107I	GTATAC	2 cut(s)	195, 737
Bst2UI	CCWGG	2 cut(s)	639, 750
Bst4CI	ACNGT	5 cut(s)	19, 188, 363, 614, 1147
Bst6I	CTCTTC	1 cut(s)	1035
BstBAI	YACGTR	1 cut(s)	740
BstC8I	GCNNGC	3 cut(s)	160, 338, 579
BstDEI	CTNAG	4 cut(s)	5, 366, 804, 1042
BstDSI	CCRYGG	1 cut(s)	844
BstF5I	GGATG	3 cut(s)	140, 758, 948
BstKTI	GATC	4 cut(s)	355, 631, 851, 919
BstMAI	GTCTC	4 cut(s)	46, 414, 431, 1134
BstMBI	GATC	4 cut(s)	352, 628, 848, 916
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 164, 494
BstNI	CCWGG	2 cut(s)	639, 750
BstSCI	CCNGG	4 cut(s)	224, 225, 637, 748
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	5 cut(s)	38, 250, 475, 481, 503
BstV2I	GAAGAC	1 cut(s)	615
BstX2I	RGATCY	2 cut(s)	628, 848
BstYI	RGATCY	2 cut(s)	628, 848
BstZ17I	GTATAC	2 cut(s)	195, 737
BtgI	CCRYGG	1 cut(s)	844
BtgZI	GCGATG	2 cut(s)	216, 312
BtsCI	GGATG	3 cut(s)	140, 758, 948
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	114, 1068
BveI	ACCTGC	1 cut(s)	806
Cac8I	GCNNGC	3 cut(s)	160, 338, 579
CaiI	CAGNNNCTG	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	602
Cfr9I	CCCGGG	1 cut(s)	225
CviAII	CATG	3 cut(s)	168, 656, 970
DdeI	CTNAG	4 cut(s)	5, 366, 804, 1042
DpnI	GATC	4 cut(s)	354, 630, 850, 918
DpnII	GATC	4 cut(s)	352, 628, 848, 916
DrdI	GACNNNNNNGTC	1 cut(s)	698
DriI	GACNNNNNGTC	2 cut(s)	444, 1126
DseDI	GACNNNNNNGTC	1 cut(s)	698
Eam1104I	CTCTTC	1 cut(s)	1035
Eam1105I	GACNNNNNGTC	2 cut(s)	444, 1126
EarI	CTCTTC	1 cut(s)	1035
Ecl136II	GAGCTC	1 cut(s)	262
Eco24I	GRGCYC	2 cut(s)	96, 264
Eco32I	GATATC	1 cut(s)	587
Eco47I	GGWCC	1 cut(s)	602
Eco53kI	GAGCTC	1 cut(s)	262
Eco57I	CTGAAG	3 cut(s)	653, 974, 1052
Eco88I	CYCGRG	1 cut(s)	225
EcoICRI	GAGCTC	1 cut(s)	262
EcoRII	CCWGG	2 cut(s)	637, 748
EcoRV	GATATC	1 cut(s)	587
EcoT38I	GRGCYC	2 cut(s)	96, 264
FaeI	CATG	3 cut(s)	171, 659, 973
FaqI	GGGAC	2 cut(s)	739, 992
FatI	CATG	3 cut(s)	167, 655, 969
FblI	GTMKAC	2 cut(s)	194, 736
Fnu4HI	GCNGC	7 cut(s)	27, 236, 239, 489, 492, 495, 866
FokI	GGATG	3 cut(s)	127, 765, 935
FriOI	GRGCYC	2 cut(s)	96, 264
Fsp4HI	GCNGC	7 cut(s)	27, 236, 239, 489, 492, 495, 866
GluI	GCNGC	7 cut(s)	27, 236, 239, 489, 492, 495, 866
HapII	CCGG	1 cut(s)	226
Hin1II	CATG	3 cut(s)	171, 659, 973
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HinfI	GANTC	1 cut(s)	1072
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	2 cut(s)	560, 1042
Hpy166II	GTNNAC	5 cut(s)	195, 219, 602, 703, 737
Hpy188I	TCNGA	6 cut(s)	414, 450, 633, 648, 1071, 1120
Hpy8I	GTNNAC	5 cut(s)	195, 219, 602, 703, 737
HpyAV	CCTTC	3 cut(s)	548, 559, 894
HpyCH4III	ACNGT	5 cut(s)	19, 188, 363, 614, 1147
HpyCH4IV	ACGT	2 cut(s)	739, 859
HpyCH4V	TGCA	6 cut(s)	56, 476, 491, 767, 969, 1023
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 164, 494
HpyF3I	CTNAG	4 cut(s)	5, 366, 804, 1042
HpySE526I	ACGT	2 cut(s)	739, 859
Hsp92II	CATG	3 cut(s)	171, 659, 973
Kzo9I	GATC	4 cut(s)	352, 628, 848, 916
LmnI	GCTCC	3 cut(s)	568, 652, 671
Lsp1109I	GCAGC	5 cut(s)	38, 250, 475, 481, 503
LweI	GCATC	5 cut(s)	239, 485, 769, 790, 957
MaeII	ACGT	2 cut(s)	739, 859
MaeIII	GTNAC	4 cut(s)	388, 784, 957, 1048
MalI	GATC	4 cut(s)	354, 630, 850, 918
MboI	GATC	4 cut(s)	352, 628, 848, 916
MboII	GAAGA	5 cut(s)	280, 620, 631, 634, 1022
MflI	RGATCY	2 cut(s)	628, 848
MhlI	GDGCHC	2 cut(s)	96, 264
MluCI	AATT	5 cut(s)	132, 468, 514, 714, 925
MlyI	GAGTC	1 cut(s)	1081
MmeI	TCCRAC	3 cut(s)	168, 174, 649
MnlI	CCTC	5 cut(s)	207, 254, 454, 457, 544
MroXI	GAANNNNTTC	1 cut(s)	883
MseI	TTAA	2 cut(s)	513, 929
MspA1I	CMGCKG	2 cut(s)	494, 868
MspI	CCGG	1 cut(s)	226
MspR9I	CCNGG	4 cut(s)	226, 227, 639, 750
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	2 cut(s)	639, 750
MwoI	GCNNNNNNNGC	3 cut(s)	53, 164, 494
NciI	CCSGG	2 cut(s)	226, 227
NdeII	GATC	4 cut(s)	352, 628, 848, 916
NlaIII	CATG	3 cut(s)	171, 659, 973
NmuCI	GTSAC	3 cut(s)	784, 957, 1048
PaqCI	CACCTGC	1 cut(s)	806
PctI	GAATGC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	883
PkrI	GCNGC	7 cut(s)	28, 237, 240, 490, 493, 496, 867
PleI	GAGTC	1 cut(s)	1080
PpsI	GAGTC	1 cut(s)	1080
Ppu21I	YACGTR	1 cut(s)	740
PshBI	ATTAAT	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	637, 748
PspGI	CCWGG	2 cut(s)	637, 748
PspPI	GGNCC	1 cut(s)	602
PstI	CTGCAG	1 cut(s)	493
PstNI	CAGNNNCTG	1 cut(s)	44
PsuI	RGATCY	2 cut(s)	628, 848
PvuII	CAGCTG	1 cut(s)	494
SacI	GAGCTC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	513, 929
SatI	GCNGC	7 cut(s)	27, 236, 239, 489, 492, 495, 866
Sau3AI	GATC	4 cut(s)	352, 628, 848, 916
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	1 cut(s)	1081
ScrFI	CCNGG	4 cut(s)	226, 227, 639, 750
SduI	GDGCHC	2 cut(s)	96, 264
SfaNI	GCATC	5 cut(s)	239, 485, 769, 790, 957
SfcI	CTRYAG	1 cut(s)	489
SinI	GGWCC	1 cut(s)	602
SmaI	CCCGGG	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	572, 1133
SmoI	CTYRAG	2 cut(s)	572, 1133
Sse9I	AATT	5 cut(s)	132, 468, 514, 714, 925
SsiI	CCGC	2 cut(s)	236, 866
SstI	GAGCTC	1 cut(s)	264
StyD4I	CCNGG	4 cut(s)	224, 225, 637, 748
TaaI	ACNGT	5 cut(s)	19, 188, 363, 614, 1147
TaiI	ACGT	2 cut(s)	742, 862
TaqI	TCGA	3 cut(s)	82, 291, 435
TaqII	GACCGA	1 cut(s)	708
TasI	AATT	5 cut(s)	132, 468, 514, 714, 925
TauI	GCSGC	2 cut(s)	238, 868
Tru1I	TTAA	2 cut(s)	513, 929
Tru9I	TTAA	2 cut(s)	513, 929
TscAI	CASTG	2 cut(s)	121, 1068
TseFI	GTSAC	3 cut(s)	784, 957, 1048
TseI	GCWGC	5 cut(s)	26, 238, 488, 491, 494
Tsp45I	GTSAC	3 cut(s)	784, 957, 1048
TspDTI	ATGAA	2 cut(s)	274, 751
TspGWI	ACGGA	1 cut(s)	833
TspMI	CCCGGG	1 cut(s)	225
TspRI	CASTG	2 cut(s)	121, 1068
VpaK11BI	GGWCC	1 cut(s)	602
VspI	ATTAAT	1 cut(s)	513
XapI	RAATTY	3 cut(s)	468, 714, 925
XmaI	CCCGGG	1 cut(s)	225
XmiI	GTMKAC	2 cut(s)	194, 736
XmnI	GAANNNNTTC	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.