Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0006014

Physical Location & Seq

Genomic Coordinates Forward (+)

215198 .. 219371

Gene Structure 4174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG002100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGCTGAGCAGAGCAACAGCCAGAGCATCAAACCACCTGTTCTTCAAGAACAAGAATTCTCAGTTTCGAGGGCTCAGCAACAATCTCTCATATGCTGCTTCAAACCCTGTATCTAACTTTGTGAGCATCACGTGGAACAACAACAACACCTCTAGAATGTCAAAAATGAAGAGTTTCACAACCCGAGCAACCGCGCAGCCTCTCAAGAATGCTGATGAGCTCATCGACTCTGTCGAGACCTTCATCTTCGATTGCGATGGAGTTATATGGAAAGGAGATAAGCTGATAGATGGCGTCCCAGAAACTCTTGATATGCTACGGTCCAAGGGCAAAAGATTAGTCTTTGTTACCAACAACTCAACAAAATCTAGGAAGCAATATGGTAAAAAGTTTGAGACACTTGGTCTGAATGTCAGTGAGGAAGAAATTTTTGCTTCATCTTTTGCTGCTGCGGCCTATTTGAAGTCCATAAATTTTCCAAAAGATAAAAAGGAAGACGGAGAGAAGAAGATAGAGCTGAAGCCTGGATTTCTGATGGAGCATGATGAGAGCGTTGGAGCTGTTGTGGTTGGATTTGATCGATATGTCAACTACTTCAAAATTCAGTATGGGACACTCTGTATACGTGAAAACCCTGGATGTCTTTTCATTGCAACAAATCGTGATGCTGTCACTCATCTCACAGATGCTCAGGAATGGGCAGGTGGTGGTTCCATGGTTGGTGCTATCCAGGGATCTACTCAGCGTGAGCCACTGGTTGTGGGAAAGCCCTCCACATTTATGATGGACTACTTAGCAAATGAATTTGGCATACTGAAGTCACAAATTTGCATGGTCGGGGACAGATTGGATACTGATATTCTGTTTGGACAAAATGGTGGTTGCAAAACTCTTCTTGTTCTCTCAGGTGTCACCACTTTACCAGTGCTTCAAAATCCCAGCAACACCATACAACCAGATTTTTACACCAACAAGATCTCAGACTTTTTGTCTCTCAAGGCTGCAACCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

337

Amino Acids

37.27

Weight (kDa)

8.65

Isoelectric Point (pI)

24.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	79 - 294	2.4e-13	haloacid dehalogenase-like hydrolase
Hydrolase_6	PF13344	81 - 160	5.3e-28	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	254 - 328	2e-20	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36700 AT5G36700 AT5G36700 AT5G36700 AT5G36790 AT5G36790 AT5G36790
fragaria_vesca	FvH4_6g00110 FvH4_6g00110
malus_domestica	MD04G1248400.v1.1 MD12G1262300.v1.1
prunus_persica	Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1 Prupe.6G364700_v2.0.a1
pyrus_communis	pycom04g21910 pycom12g24170
rosa_chinensis	RchiOBHm_Chr3g0447461
rosa_laevigata	RLG00000025996
rosa_roxburghii	Rroxscaffold_6G00425680
rosa_rugosa	Rorug02G0601900 Rorug02G0602000
rosa_samantha	Rh3AG002200 Rh3BG001700 Rh3CG002000 Rh3DG002100
rosa_wichuraiana	Rw3G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	692
Acc36I	ACCTGC	1 cut(s)	692
AccI	GTMKAC	1 cut(s)	622
AccII	CGCG	1 cut(s)	194
AciI	CCGC	2 cut(s)	192, 452
AclWI	GGATC	1 cut(s)	742
AcsI	RAATTY	6 cut(s)	55, 426, 472, 600, 803, 825
AcuI	CTGAAG	2 cut(s)	539, 836
AcvI	CACGTG	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	294
AgsI	TTSAA	5 cut(s)	46, 102, 463, 598, 932
AhdI	GACNNNNNGTC	2 cut(s)	402, 988
AjnI	CCWGG	3 cut(s)	523, 634, 729
AluBI	AGCT	4 cut(s)	220, 283, 517, 560
AluI	AGCT	4 cut(s)	220, 283, 517, 560
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	3 cut(s)	230, 389, 996
AlwI	GGATC	1 cut(s)	742
Ama87I	CYCGRG	1 cut(s)	183
AoxI	GGCC	1 cut(s)	453
ApeKI	GCWGC	5 cut(s)	95, 196, 446, 449, 1001
ApoI	RAATTY	6 cut(s)	55, 426, 472, 600, 803, 825
ArsI	GACNNNNNNTTYG	2 cut(s)	324, 356
Asp700I	GAANNNNTTC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	1 cut(s)	321
AsuHPI	GGTGA	1 cut(s)	904
AvaI	CYCGRG	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	321
BanII	GRGCYC	2 cut(s)	75, 222
BbrPI	CACGTG	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	5 cut(s)	82, 208, 433, 436, 988
BccI	CCATC	4 cut(s)	251, 284, 529, 778
BciT130I	CCWGG	3 cut(s)	525, 636, 731
BciVI	GTATCC	1 cut(s)	844
BcoDI	GTCTC	3 cut(s)	230, 389, 996
BfaI	CTAG	2 cut(s)	153, 369
BfuAI	ACCTGC	1 cut(s)	692
BfuI	GTATCC	1 cut(s)	844
BglII	AGATCT	1 cut(s)	975
BisI	GCNGC	6 cut(s)	96, 197, 447, 450, 453, 1002
BlpI	GCTNAGC	2 cut(s)	5, 74
BlsI	GCNGC	6 cut(s)	97, 198, 448, 451, 454, 1003
Bme1390I	CCNGG	3 cut(s)	525, 636, 731
Bme18I	GGWCC	1 cut(s)	321
BmeRI	GACNNNNNGTC	2 cut(s)	402, 988
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	712
BmrFI	CCNGG	3 cut(s)	525, 636, 731
BmsI	GCATC	4 cut(s)	35, 135, 655, 676
BpiI	GAAGAC	1 cut(s)	501
Bpu10I	CCTNAGC	1 cut(s)	690
Bpu1102I	GCTNAGC	2 cut(s)	5, 74
BpuEI	CTTGAG	2 cut(s)	188, 980
Bsa29I	ATCGAT	1 cut(s)	580
BsaAI	YACGTR	2 cut(s)	132, 626
BsaHI	GRCGYC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	4 cut(s)	324, 634, 714, 730
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bse1I	ACTGG	2 cut(s)	759, 923
Bse3DI	GCAATG	1 cut(s)	648
BseBI	CCWGG	3 cut(s)	525, 636, 731
BseCI	ATCGAT	1 cut(s)	580
BseDI	CCNNGG	4 cut(s)	324, 634, 714, 730
BseGI	GGATG	1 cut(s)	644
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	6 cut(s)	74, 88, 704, 755, 918, 993
BseNI	ACTGG	2 cut(s)	759, 923
BseXI	GCAGC	5 cut(s)	82, 208, 433, 436, 988
BseYI	CCCAGC	1 cut(s)	938
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	1 cut(s)	455
BshVI	ATCGAT	1 cut(s)	580
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	183
BslFI	GGGAC	3 cut(s)	281, 625, 854
BsmAI	GTCTC	3 cut(s)	230, 389, 996
BsmFI	GGGAC	3 cut(s)	281, 625, 854
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	455
Bso31I	GGTCTC	1 cut(s)	230
BsoBI	CYCGRG	1 cut(s)	183
Bsp1286I	GDGCHC	2 cut(s)	75, 222
Bsp143I	GATC	3 cut(s)	577, 734, 975
Bsp1720I	GCTNAGC	2 cut(s)	5, 74
Bsp19I	CCATGG	1 cut(s)	714
BspACI	CCGC	2 cut(s)	192, 452
BspANI	GGCC	1 cut(s)	455
BspCNI	CTCAG	6 cut(s)	73, 87, 703, 754, 917, 992
BspDI	ATCGAT	1 cut(s)	580
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	712
BspMI	ACCTGC	1 cut(s)	692
BspPI	GGATC	1 cut(s)	742
BspTNI	GGTCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	648
BsrI	ACTGG	2 cut(s)	759, 923
BssECI	CCNNGG	4 cut(s)	324, 634, 714, 730
BssMI	GATC	3 cut(s)	577, 734, 975
BssNAI	GTATAC	1 cut(s)	623
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	2 cut(s)	324, 714
Bst1107I	GTATAC	1 cut(s)	623
Bst2UI	CCWGG	3 cut(s)	525, 636, 731
Bst4CI	ACNGT	2 cut(s)	321, 1009
Bst6I	CTCTTC	2 cut(s)	164, 897
BstACI	GRCGYC	1 cut(s)	294
BstBAI	YACGTR	2 cut(s)	132, 626
BstDEI	CTNAG	8 cut(s)	5, 60, 74, 690, 741, 793, 904, 979
BstDSI	CCRYGG	1 cut(s)	714
BstF5I	GGATG	1 cut(s)	644
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	3 cut(s)	580, 737, 978
BstMAI	GTCTC	3 cut(s)	230, 389, 996
BstMBI	GATC	3 cut(s)	577, 734, 975
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	3 cut(s)	525, 636, 731
BstSCI	CCNGG	3 cut(s)	523, 634, 729
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	5 cut(s)	82, 208, 433, 436, 988
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	2 cut(s)	734, 975
BstYI	RGATCY	2 cut(s)	734, 975
BstZ17I	GTATAC	1 cut(s)	623
Bsu15I	ATCGAT	1 cut(s)	580
BsuI	GTATCC	1 cut(s)	844
BsuRI	GGCC	1 cut(s)	455
BsuTUI	ATCGAT	1 cut(s)	580
BtgI	CCRYGG	1 cut(s)	714
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	644
BtsIMutI	CAGTG	3 cut(s)	421, 752, 930
BveI	ACCTGC	1 cut(s)	692
CfoI	GCGC	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	321
ClaI	ATCGAT	1 cut(s)	580
CseI	GACGC	1 cut(s)	283
CviAII	CATG	3 cut(s)	542, 715, 832
DdeI	CTNAG	8 cut(s)	5, 60, 74, 690, 741, 793, 904, 979
DpnI	GATC	3 cut(s)	579, 736, 977
DpnII	GATC	3 cut(s)	577, 734, 975
DriI	GACNNNNNGTC	2 cut(s)	402, 988
Eam1104I	CTCTTC	2 cut(s)	164, 897
Eam1105I	GACNNNNNGTC	2 cut(s)	402, 988
EarI	CTCTTC	2 cut(s)	164, 897
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	2 cut(s)	324, 714
Eco24I	GRGCYC	2 cut(s)	75, 222
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	321
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	2 cut(s)	539, 836
Eco72I	CACGTG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	55
EcoRII	CCWGG	3 cut(s)	523, 634, 729
EcoT14I	CCWWGG	2 cut(s)	324, 714
EcoT38I	GRGCYC	2 cut(s)	75, 222
ErhI	CCWWGG	2 cut(s)	324, 714
FaeI	CATG	3 cut(s)	545, 718, 835
FaqI	GGGAC	3 cut(s)	281, 625, 854
FatI	CATG	3 cut(s)	541, 714, 831
FauNDI	CATATG	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	622
Fnu4HI	GCNGC	6 cut(s)	96, 197, 447, 450, 453, 1002
FokI	GGATG	1 cut(s)	651
FriOI	GRGCYC	2 cut(s)	75, 222
Fsp4HI	GCNGC	6 cut(s)	96, 197, 447, 450, 453, 1002
FspBI	CTAG	2 cut(s)	153, 369
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	6 cut(s)	96, 197, 447, 450, 453, 1002
GsaI	CCCAGC	1 cut(s)	942
HaeIII	GGCC	1 cut(s)	455
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	545, 718, 835
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	1 cut(s)	227
HphI	GGTGA	1 cut(s)	904
Hpy166II	GTNNAC	2 cut(s)	589, 623
Hpy188I	TCNGA	3 cut(s)	408, 534, 982
Hpy188III	TCNNGA	7 cut(s)	46, 153, 205, 235, 308, 662, 692
Hpy8I	GTNNAC	2 cut(s)	589, 623
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	2 cut(s)	321, 1009
HpyCH4IV	ACGT	2 cut(s)	131, 625
HpyCH4V	TGCA	4 cut(s)	653, 831, 885, 1004
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	8 cut(s)	5, 60, 74, 690, 741, 793, 904, 979
HpySE526I	ACGT	2 cut(s)	131, 625
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	545, 718, 835
HspAI	GCGC	1 cut(s)	194
Kzo9I	GATC	3 cut(s)	577, 734, 975
LmnI	GCTCC	2 cut(s)	538, 557
Lsp1109I	GCAGC	5 cut(s)	82, 208, 433, 436, 988
LweI	GCATC	4 cut(s)	35, 135, 655, 676
MaeI	CTAG	2 cut(s)	153, 369
MaeII	ACGT	2 cut(s)	131, 625
MaeIII	GTNAC	4 cut(s)	346, 670, 819, 910
MalI	GATC	3 cut(s)	579, 736, 977
MboI	GATC	3 cut(s)	577, 734, 975
MboII	GAAGA	8 cut(s)	34, 181, 238, 434, 506, 517, 520, 884
MflI	RGATCY	2 cut(s)	734, 975
MhlI	GDGCHC	2 cut(s)	75, 222
MluCI	AATT	6 cut(s)	55, 426, 472, 600, 803, 825
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	2 cut(s)	535, 550
MnlI	CCTC	5 cut(s)	62, 160, 210, 412, 781
MroXI	GAANNNNTTC	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	779
MspR9I	CCNGG	3 cut(s)	525, 636, 731
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	3 cut(s)	525, 636, 731
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	452
NcoI	CCATGG	1 cut(s)	714
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	3 cut(s)	577, 734, 975
NlaIII	CATG	3 cut(s)	545, 718, 835
NlaIV	GGNNCC	1 cut(s)	712
NmuCI	GTSAC	3 cut(s)	670, 819, 910
PaqCI	CACCTGC	1 cut(s)	692
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	173
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	6 cut(s)	97, 198, 448, 451, 454, 1003
PleI	GAGTC	1 cut(s)	221
PmaCI	CACGTG	1 cut(s)	132
PmlI	CACGTG	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	221
Ppu21I	YACGTR	2 cut(s)	132, 626
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	3 cut(s)	523, 634, 729
PspCI	CACGTG	1 cut(s)	132
PspFI	CCCAGC	1 cut(s)	938
PspGI	CCWGG	3 cut(s)	523, 634, 729
PspN4I	GGNNCC	1 cut(s)	712
PspPI	GGNCC	1 cut(s)	321
PsuI	RGATCY	2 cut(s)	734, 975
PsyI	GACNNNGTC	1 cut(s)	230
RseI	CAYNNNNRTG	1 cut(s)	779
SacI	GAGCTC	1 cut(s)	222
SatI	GCNGC	6 cut(s)	96, 197, 447, 450, 453, 1002
Sau3AI	GATC	3 cut(s)	577, 734, 975
Sau96I	GGNCC	1 cut(s)	321
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	3 cut(s)	525, 636, 731
SduI	GDGCHC	2 cut(s)	75, 222
SfaNI	GCATC	4 cut(s)	35, 135, 655, 676
SinI	GGWCC	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	779
SmlI	CTYRAG	2 cut(s)	203, 995
SmoI	CTYRAG	2 cut(s)	203, 995
Sse9I	AATT	6 cut(s)	55, 426, 472, 600, 803, 825
SsiI	CCGC	2 cut(s)	192, 452
SspMI	CTAG	2 cut(s)	153, 369
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	523, 634, 729
StyI	CCWWGG	2 cut(s)	324, 714
TaaI	ACNGT	2 cut(s)	321, 1009
TaiI	ACGT	2 cut(s)	134, 628
TaqI	TCGA	5 cut(s)	67, 225, 234, 249, 580
TasI	AATT	6 cut(s)	55, 426, 472, 600, 803, 825
TauI	GCSGC	1 cut(s)	455
TscAI	CASTG	3 cut(s)	421, 759, 930
TseFI	GTSAC	3 cut(s)	670, 819, 910
TseI	GCWGC	5 cut(s)	95, 196, 446, 449, 1001
Tsp45I	GTSAC	3 cut(s)	670, 819, 910
TspDTI	ATGAA	5 cut(s)	182, 232, 426, 637, 816
TspGWI	ACGGA	1 cut(s)	513
TspRI	CASTG	3 cut(s)	421, 759, 930
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	321
XapI	RAATTY	6 cut(s)	55, 426, 472, 600, 803, 825
XbaI	TCTAGA	1 cut(s)	152
XcmI	CCANNNNNNNNNTGG	1 cut(s)	781
XmiI	GTMKAC	1 cut(s)	622
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	2 cut(s)	153, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.