Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010576

Physical Location & Seq

Genomic Coordinates Reverse (-)

991359 .. 993321

Gene Structure 1963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g01750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGGTTGCTTTCCAGCTTGTTTCACTTCTTCTAATCGCAGAAAGCACCGAAAATCAGTAGCTGTAGCTCCCTCTACACAACCCCAACACCAAATCCTTGAAGCTACTGAAGAAGCTGTTCGATTTGAACCCACAAAGCCAGATGACATTATCAAACCCATTACAGATTCCAATGTGCAGAGGGAGGTTATTGAAGAAGAAACCAATAATGATGCTAAAAAGAAAGTGACATTTGATTTGGTGGAAGAAAGGATTGATGAGAAACCAAAAGAGACTGAACCAATTTTGGGTTCTATTGGATCAAATGTAGTTACTGCGGTCTCAGCTCATTCATTGAATTATAGGTATGAGAATTGTTCAAACAGTGAGGATGAAGATGAAGGTTTGATAGATTTATCAGGGAGTGATTTGAATGGAGATGAATATGGTGGGAGTGTTGATGATGAGGTTGAGAGCATTAAGACAGTGATTCAAGAACAAGAGTCTTCAGAATCTTTGTTTTCAATATCAATTGGTTCGAGGAAGCGGGTTAGTGATGCTGAGGAAGATGAGAAGGAGGTGAATAGTCCAATGCCAAAGGCAAAGCCAATTGAGTCAGACCAAAGTGGTAACAGGAGTCAGCATTGTCATTCAGTGTTGAGCCCAATTGAGAATCTTAGTCAATGGAAGGAGGTAAAGAAAGCAGTTCCTTTAGATTCGAAACAGCAAGAGAAGGAGAATATAAATGCTGAGCAGGATTTCGACATACCAATTAGTCCAGAGCCTACACTGAAGCTGTCAAAACAAAAACCACTCGAGGCCAATGACATAAAGCTTGTCGAACAAGAAACTGGGGTCGACACTAGCCTTTCGAGCTGGTTGGTTGAATGTGAATCCACCCCCAAGCCGAATGGTAGTGACAATTCTGTCGGGAACTTGATGTGTGAGGGAGTGAGTCAATCAAGACGCCTGGGAGATAGACTAGTTTTGGGAGCATGGACTAGTGAAAAGCTTAAGCAGTTGTCTAATTCTTCTACTCCAAACCAATCGCCAAGCCTGAGCTCCGATCAGATACCGATCAGAGGGACTGTAGGGAGCTACTGGAGTCACACTGACCAGGCCACAGAATCGGACTCAAACTCTTCGGGCAGAGGAAAGGAAAATGCATCAGGGAGGAGCAGAGAGGATGAGAAAGTGAAATGGAAGACTACACCATTGGAGAGAGTTCTGGATTTGGGCATACTTGGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

411

Amino Acids

45.17

Weight (kDa)

4.74

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01750
malus_domestica	MD04G1231100.v1.1 MD12G1249400.v1.1
prunus_persica	Prupe.6G350800_v2.0.a1 Prupe.6G350800_v2.0.a1
pyrus_communis	pycom04g20470 pycom12g22920
rosa_chinensis	RchiOBHm_Chr3g0449491
rosa_laevigata	RLG00000025822 RLG00000025825
rosa_multiflora	Rmu_sc0000430.1_g000018 Rmu_sc0019012.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427450
rosa_rugosa	Rorug02G0621600 Rorug02G0621700
rosa_samantha	Rh3AG019800 Rh3BG019800 Rh3CG018500 Rh3DG019800
rosa_wichuraiana	Rw3G001540 Rw3G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	905
AccI	GTMKAC	1 cut(s)	837
AciI	CCGC	2 cut(s)	317, 526
AclWI	GGATC	1 cut(s)	307
AcuI	CTGAAG	3 cut(s)	129, 471, 791
AcyI	GRCGYC	1 cut(s)	946
AfiI	CCNNNNNNNGG	2 cut(s)	287, 1061
AflII	CTTAAG	1 cut(s)	992
AgsI	TTSAA	9 cut(s)	101, 128, 194, 337, 360, 412, 473, 504, 866
AhlI	ACTAGT	2 cut(s)	961, 980
AjnI	CCWGG	2 cut(s)	948, 1095
AjuI	GAANNNNNNNTTGG	2 cut(s)	274, 306
Alw21I	GWGCWC	1 cut(s)	1043
Alw26I	GTCTC	2 cut(s)	266, 325
AlwI	GGATC	1 cut(s)	307
AlwNI	CAGNNNCTG	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	794
AoxI	GGCC	2 cut(s)	798, 1098
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
Asp700I	GAANNNNTTC	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	571
AsuII	TTCGAA	1 cut(s)	698
AvaI	CYCGRG	1 cut(s)	794
BanII	GRGCYC	2 cut(s)	644, 1043
BbsI	GAAGAC	2 cut(s)	477, 1190
Bbv12I	GWGCWC	1 cut(s)	1043
BbvCI	CCTCAGC	1 cut(s)	540
BciT130I	CCWGG	2 cut(s)	950, 1097
BcoDI	GTCTC	2 cut(s)	266, 325
BcuI	ACTAGT	2 cut(s)	961, 980
BfaI	CTAG	3 cut(s)	843, 962, 981
BfmI	CTRYAG	2 cut(s)	63, 1068
BfrI	CTTAAG	1 cut(s)	992
BlpI	GCTNAGC	1 cut(s)	729
Bme1390I	CCNGG	2 cut(s)	950, 1097
BmeT110I	CYCGRG	1 cut(s)	794
BmrFI	CCNGG	2 cut(s)	950, 1097
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	3 cut(s)	202, 526, 1154
BmuI	ACTGGG	1 cut(s)	840
BpiI	GAAGAC	2 cut(s)	477, 1190
BpmI	CTGGAG	1 cut(s)	1102
Bpu10I	CCTNAGC	2 cut(s)	540, 1037
Bpu1102I	GCTNAGC	1 cut(s)	729
Bpu14I	TTCGAA	1 cut(s)	698
BsaBI	GATNNNNATC	1 cut(s)	1055
BsaHI	GRCGYC	1 cut(s)	946
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	949
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 1061
Bse1I	ACTGG	2 cut(s)	835, 1085
Bse8I	GATNNNNATC	1 cut(s)	1055
BseBI	CCWGG	2 cut(s)	950, 1097
BseDI	CCNNGG	1 cut(s)	949
BseGI	GGATG	2 cut(s)	376, 1171
BseJI	GATNNNNATC	1 cut(s)	1055
BseLI	CCNNNNNNNGG	2 cut(s)	287, 1061
BseMII	CTCAG	4 cut(s)	336, 531, 720, 1028
BseNI	ACTGG	2 cut(s)	835, 1085
BseRI	GAGGAG	1 cut(s)	1168
BsgI	GTGCAG	1 cut(s)	197
BshFI	GGCC	2 cut(s)	800, 1100
BsiHKAI	GWGCWC	1 cut(s)	1043
BsiHKCI	CYCGRG	1 cut(s)	794
BslFI	GGGAC	1 cut(s)	1078
BslI	CCNNNNNNNGG	2 cut(s)	287, 1061
BsmAI	GTCTC	2 cut(s)	266, 325
BsmFI	GGGAC	1 cut(s)	1078
BsnI	GGCC	2 cut(s)	800, 1100
Bso31I	GGTCTC	1 cut(s)	325
BsoBI	CYCGRG	1 cut(s)	794
Bsp119I	TTCGAA	1 cut(s)	698
Bsp1286I	GDGCHC	2 cut(s)	644, 1043
Bsp143I	GATC	3 cut(s)	299, 1045, 1056
Bsp1720I	GCTNAGC	1 cut(s)	729
BspACI	CCGC	2 cut(s)	317, 526
BspANI	GGCC	2 cut(s)	800, 1100
BspCNI	CTCAG	4 cut(s)	335, 532, 721, 1029
BspPI	GGATC	1 cut(s)	307
BspT104I	TTCGAA	1 cut(s)	698
BspTI	CTTAAG	1 cut(s)	992
BspTNI	GGTCTC	1 cut(s)	325
BsrI	ACTGG	2 cut(s)	835, 1085
BssECI	CCNNGG	1 cut(s)	949
BssMI	GATC	3 cut(s)	299, 1045, 1056
BssNI	GRCGYC	1 cut(s)	946
Bst2UI	CCWGG	2 cut(s)	950, 1097
Bst4CI	ACNGT	3 cut(s)	365, 466, 1069
Bst6I	CTCTTC	1 cut(s)	1126
BstACI	GRCGYC	1 cut(s)	946
BstAFI	CTTAAG	1 cut(s)	992
BstBI	TTCGAA	1 cut(s)	698
BstDEI	CTNAG	6 cut(s)	322, 540, 656, 729, 1037, 1230
BstF5I	GGATG	2 cut(s)	376, 1171
BstKTI	GATC	3 cut(s)	302, 1048, 1059
BstMAI	GTCTC	2 cut(s)	266, 325
BstMBI	GATC	3 cut(s)	299, 1045, 1056
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 852
BstNI	CCWGG	2 cut(s)	950, 1097
BstSCI	CCNGG	2 cut(s)	948, 1095
BstSFI	CTRYAG	2 cut(s)	63, 1068
BstV2I	GAAGAC	2 cut(s)	477, 1190
BsuRI	GGCC	2 cut(s)	800, 1100
BtsCI	GGATG	2 cut(s)	376, 1171
BtsIMutI	CAGTG	5 cut(s)	370, 471, 639, 767, 1089
CaiI	CAGNNNCTG	1 cut(s)	62
CseI	GACGC	1 cut(s)	954
CviAII	CATG	1 cut(s)	975
DdeI	CTNAG	6 cut(s)	322, 540, 656, 729, 1037, 1230
DpnI	GATC	3 cut(s)	301, 1047, 1058
DpnII	GATC	3 cut(s)	299, 1045, 1056
DrdI	GACNNNNNNGTC	1 cut(s)	905
DseDI	GACNNNNNNGTC	1 cut(s)	905
Eam1104I	CTCTTC	1 cut(s)	1126
EarI	CTCTTC	1 cut(s)	1126
Ecl136II	GAGCTC	1 cut(s)	1041
Eco24I	GRGCYC	2 cut(s)	644, 1043
Eco31I	GGTCTC	1 cut(s)	325
Eco53kI	GAGCTC	1 cut(s)	1041
Eco57I	CTGAAG	3 cut(s)	129, 471, 791
Eco88I	CYCGRG	1 cut(s)	794
EcoICRI	GAGCTC	1 cut(s)	1041
EcoRII	CCWGG	2 cut(s)	948, 1095
EcoT22I	ATGCAT	1 cut(s)	1147
EcoT38I	GRGCYC	2 cut(s)	644, 1043
FaeI	CATG	1 cut(s)	978
FaiI	YATR	8 cut(s)	342, 348, 426, 722, 746, 809, 976, 1220
FaqI	GGGAC	1 cut(s)	1078
FatI	CATG	1 cut(s)	974
FauI	CCCGC	1 cut(s)	519
FblI	GTMKAC	1 cut(s)	837
FokI	GGATG	2 cut(s)	383, 1178
FriOI	GRGCYC	2 cut(s)	644, 1043
FspBI	CTAG	3 cut(s)	843, 962, 981
GsuI	CTGGAG	1 cut(s)	1102
HaeIII	GGCC	2 cut(s)	800, 1100
HgaI	GACGC	1 cut(s)	954
Hin1I	GRCGYC	1 cut(s)	946
Hin1II	CATG	1 cut(s)	978
HincII	GTYRAC	1 cut(s)	838
HindII	GTYRAC	1 cut(s)	838
HindIII	AAGCTT	2 cut(s)	812, 989
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	1 cut(s)	838
Hpy188I	TCNGA	6 cut(s)	490, 598, 1045, 1050, 1061, 1111
Hpy188III	TCNNGA	5 cut(s)	473, 758, 910, 942, 1208
Hpy8I	GTNNAC	1 cut(s)	838
HpyAV	CCTTC	4 cut(s)	374, 547, 661, 706
HpyCH4III	ACNGT	3 cut(s)	365, 466, 1069
HpyCH4V	TGCA	2 cut(s)	178, 1145
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 852
HpyF3I	CTNAG	6 cut(s)	322, 540, 656, 729, 1037, 1230
Hsp92I	GRCGYC	1 cut(s)	946
Hsp92II	CATG	1 cut(s)	978
Kzo9I	GATC	3 cut(s)	299, 1045, 1056
LmnI	GCTCC	6 cut(s)	73, 971, 1046, 1074, 1155, 1226
LweI	GCATC	3 cut(s)	202, 526, 1154
MaeI	CTAG	3 cut(s)	843, 962, 981
MaeIII	GTNAC	5 cut(s)	226, 310, 608, 896, 1085
MalI	GATC	3 cut(s)	301, 1047, 1058
MboI	GATC	3 cut(s)	299, 1045, 1056
MfeI	CAATTG	3 cut(s)	510, 588, 645
MhlI	GDGCHC	2 cut(s)	644, 1043
MluCI	AATT	9 cut(s)	282, 337, 352, 510, 588, 645, 750, 901, 1006
MlyI	GAGTC	6 cut(s)	491, 602, 625, 943, 1093, 1106
Mph1103I	ATGCAT	1 cut(s)	1147
MroXI	GAANNNNTTC	1 cut(s)	117
MseI	TTAA	2 cut(s)	459, 993
MspCI	CTTAAG	1 cut(s)	992
MspR9I	CCNGG	2 cut(s)	950, 1097
MunI	CAATTG	3 cut(s)	510, 588, 645
MvaI	CCWGG	2 cut(s)	950, 1097
MwoI	GCNNNNNNNGC	2 cut(s)	323, 852
NdeII	GATC	3 cut(s)	299, 1045, 1056
NlaIII	CATG	1 cut(s)	978
NmuCI	GTSAC	3 cut(s)	226, 896, 1085
NsiI	ATGCAT	1 cut(s)	1147
NspV	TTCGAA	1 cut(s)	698
PaeR7I	CTCGAG	1 cut(s)	794
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	7 cut(s)	167, 469, 491, 652, 695, 872, 1106
PleI	GAGTC	6 cut(s)	490, 601, 624, 942, 1092, 1106
PpsI	GAGTC	6 cut(s)	490, 601, 624, 942, 1092, 1106
Psp124BI	GAGCTC	1 cut(s)	1043
Psp6I	CCWGG	2 cut(s)	948, 1095
PspGI	CCWGG	2 cut(s)	948, 1095
PspXI	VCTCGAGB	1 cut(s)	794
PstNI	CAGNNNCTG	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	1043
SalI	GTCGAC	1 cut(s)	836
SaqAI	TTAA	2 cut(s)	459, 993
Sau3AI	GATC	3 cut(s)	299, 1045, 1056
SchI	GAGTC	6 cut(s)	491, 602, 625, 943, 1093, 1106
ScrFI	CCNGG	2 cut(s)	950, 1097
SduI	GDGCHC	2 cut(s)	644, 1043
SfaNI	GCATC	3 cut(s)	202, 526, 1154
SfcI	CTRYAG	2 cut(s)	63, 1068
Sfr274I	CTCGAG	1 cut(s)	794
SfuI	TTCGAA	1 cut(s)	698
SlaI	CTCGAG	1 cut(s)	794
SmlI	CTYRAG	2 cut(s)	794, 992
SmoI	CTYRAG	2 cut(s)	794, 992
SpeI	ACTAGT	2 cut(s)	961, 980
Sse9I	AATT	9 cut(s)	282, 337, 352, 510, 588, 645, 750, 901, 1006
SsiI	CCGC	2 cut(s)	317, 526
SspMI	CTAG	3 cut(s)	843, 962, 981
SstI	GAGCTC	1 cut(s)	1043
StyD4I	CCNGG	2 cut(s)	948, 1095
TaaI	ACNGT	3 cut(s)	365, 466, 1069
TaqI	TCGA	8 cut(s)	121, 518, 698, 741, 795, 819, 837, 851
TasI	AATT	9 cut(s)	282, 337, 352, 510, 588, 645, 750, 901, 1006
TfiI	GAWTC	7 cut(s)	167, 469, 491, 652, 695, 872, 1106
Tru1I	TTAA	2 cut(s)	459, 993
Tru9I	TTAA	2 cut(s)	459, 993
TscAI	CASTG	5 cut(s)	370, 471, 639, 774, 1096
TseFI	GTSAC	3 cut(s)	226, 896, 1085
Tsp45I	GTSAC	3 cut(s)	226, 896, 1085
TspDTI	ATGAA	4 cut(s)	321, 387, 393, 435
TspRI	CASTG	5 cut(s)	370, 471, 639, 774, 1096
Vha464I	CTTAAG	1 cut(s)	992
XhoI	CTCGAG	1 cut(s)	794
XmiI	GTMKAC	1 cut(s)	837
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	3 cut(s)	843, 962, 981
Zsp2I	ATGCAT	1 cut(s)	1147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.