Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010576

Physical Location & Seq

Genomic Coordinates Forward (+)

48534088 .. 48535647

Gene Structure 1560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025825

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGGTTGCTTTCCAGCTTGTTTCACTTCTTCTAATAGCCGAAAGCACCGAAAATCAGTAGCTGTAACTCCCTCTATGCAAAACCAAAAACAAATCGTTGAAGCTACCGAAGAAGGAGCTGTTCTATTTGAACCCACAAAGCTAGATGACATTATCAAACCCATTAATCCCATTACAGAATCCAAACCCAGACAGATTATTGAAGAACAAACCAAGAATGATGTTAAAGGGAAAGTGACATTTGATTTGGAGGAAGAAGGCATTGCTGAGAAACAGGATGAAAATAAAGAGGAAACACCAAAAGAGATTGAACCAATTTTGGGTTCTATTGGATCAAGTGTAGTTACTGTGGTACCATCTTATCCATCGAATCATAGGTATGAAAATTGCTCAAACAGTGAGGATGAAGATGAAGGTGTAATAGATTTATCAGGAAGTGATTTGAATGGAGATGATTCTGGTGAGAGTGTTGAAGATGAGGTTGAGAGCAATAAGCAAAGTGTGATTCAAGAACAAGAGTCTTCAGAATCTTTGTTTTCGATATCAATTGATTCGAGGACTAAGCAAAGTGATGCTGAAGAAGATGAGAAGGAGGTGAATAGTCCAATGCCAAAACCAAAGCCAATTGAATCAGACCAAAGTGGTAGAGATAATAGTAATAGGAGTCAGCATTGCCATTCAGTGTTGAGCCCCATAGAGAATCTTAGTCAATGGAAGGAAGTAAAAGCGAAAGCAATTCCTTTAGCTTCGAATCACCAAGAGAAGGAGAATATGAATGCTGAGCAAGATTTCAACATACCAATTAGTCCAGAGCCTACACTGAAGCTGTCAAAACACTTCAGACCACTTGGGTCCAATGACCTAAAGCTTGTTGACCTAGAAAATGGGGTTGACACTAGCCTTTCGAGCTGGTTGGGAAATTCTGTCGGGAACTTGATGTGTGAGGGAGTGAGTTCGTCAAGAAGACTTGGAGATAGACCAATTTTAGGAGCATGGACTAGTGAAGAGCTTAAGCAGTTGTCTAATTCTTCTACTCTAAACCAGTCGCGAAGTCCGAGTCCTGATCAAATACCGATCATAGGGACTGTAGGGAGCTACTGGAGTCACACTGGTCAGGCCACGGATTCAGACTCAAACTCTTCCAGCAGAGGAATGGAAAACAAAGCAGGGAGGAACAGAGAGGATGAGAAAGTGAAATGGAAGACTATACCATTCGAGGCAAAATTGGAGAGAGTTTTAGATATGGGCATACTTGGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

421

Amino Acids

46.3

Weight (kDa)

4.72

Isoelectric Point (pI)

59.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01750
malus_domestica	MD04G1231100.v1.1 MD12G1249400.v1.1
prunus_persica	Prupe.6G350800_v2.0.a1 Prupe.6G350800_v2.0.a1
pyrus_communis	pycom04g20470 pycom12g22920
rosa_chinensis	RchiOBHm_Chr3g0449491
rosa_laevigata	RLG00000025822 RLG00000025825
rosa_multiflora	Rmu_sc0000430.1_g000018 Rmu_sc0019012.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427450
rosa_rugosa	Rorug02G0621600 Rorug02G0621700
rosa_samantha	Rh3AG019800 Rh3BG019800 Rh3CG018500 Rh3DG019800
rosa_wichuraiana	Rw3G001540 Rw3G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	352
AccB1I	GGYRCC	1 cut(s)	352
AccII	CGCG	1 cut(s)	1048
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	919
AcuI	CTGAAG	4 cut(s)	507, 597, 823, 842
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	4 cut(s)	320, 763, 986, 1079
AflII	CTTAAG	1 cut(s)	1010
AgsI	TTSAA	9 cut(s)	101, 131, 203, 311, 445, 473, 509, 629, 793
AhlI	ACTAGT	1 cut(s)	998
AjuI	GAANNNNNNNTTGG	2 cut(s)	307, 339
AlwI	GGATC	1 cut(s)	340
AlwNI	CAGNNNCTG	1 cut(s)	62
AoxI	GGCC	1 cut(s)	1116
ApoI	RAATTY	1 cut(s)	919
ArsI	GACNNNNNNTTYG	4 cut(s)	229, 261, 1042, 1074
AseI	ATTAAT	1 cut(s)	165
Asp718I	GGTACC	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	852
AsuHPI	GGTGA	3 cut(s)	473, 607, 746
AsuII	TTCGAA	1 cut(s)	749
AvaII	GGWCC	1 cut(s)	852
BaeI	ACNNNNGTAYC	2 cut(s)	336, 369
BanI	GGYRCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	692
BbsI	GAAGAC	3 cut(s)	513, 970, 1208
BccI	CCATC	2 cut(s)	364, 373
BclI	TGATCA	1 cut(s)	1063
BcuI	ACTAGT	1 cut(s)	998
BfaI	CTAG	4 cut(s)	143, 878, 897, 999
BfmI	CTRYAG	1 cut(s)	1086
BfrI	CTTAAG	1 cut(s)	1010
BlpI	GCTNAGC	1 cut(s)	780
Bme18I	GGWCC	1 cut(s)	852
BmgT120I	GGNCC	1 cut(s)	852
BmiI	GGNNCC	2 cut(s)	354, 853
BmsI	GCATC	1 cut(s)	562
BpiI	GAAGAC	3 cut(s)	513, 970, 1208
BpmI	CTGGAG	1 cut(s)	1120
Bpu1102I	GCTNAGC	1 cut(s)	780
Bpu14I	TTCGAA	1 cut(s)	749
BsaJI	CCNNGG	1 cut(s)	1119
Bsc4I	CCNNNNNNNGG	4 cut(s)	320, 763, 986, 1079
Bse1I	ACTGG	3 cut(s)	1042, 1103, 1114
Bse3DI	GCAATG	2 cut(s)	261, 670
BseDI	CCNNGG	1 cut(s)	1119
BseGI	GGATG	3 cut(s)	283, 409, 1189
BseLI	CCNNNNNNNGG	4 cut(s)	320, 763, 986, 1079
BseMI	GCAATG	2 cut(s)	261, 670
BseMII	CTCAG	2 cut(s)	258, 771
BseNI	ACTGG	3 cut(s)	1042, 1103, 1114
Bsh1236I	CGCG	1 cut(s)	1048
BshFI	GGCC	1 cut(s)	1118
BshNI	GGYRCC	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	1096
BslI	CCNNNNNNNGG	4 cut(s)	320, 763, 986, 1079
BsmFI	GGGAC	1 cut(s)	1096
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	1 cut(s)	1118
Bsp119I	TTCGAA	1 cut(s)	749
Bsp1286I	GDGCHC	1 cut(s)	692
Bsp143I	GATC	3 cut(s)	332, 1063, 1074
Bsp1720I	GCTNAGC	1 cut(s)	780
Bsp68I	TCGCGA	1 cut(s)	1048
BspANI	GGCC	1 cut(s)	1118
BspCNI	CTCAG	2 cut(s)	259, 772
BspFNI	CGCG	1 cut(s)	1048
BspLI	GGNNCC	2 cut(s)	354, 853
BspPI	GGATC	1 cut(s)	340
BspQI	GCTCTTC	1 cut(s)	999
BspT104I	TTCGAA	1 cut(s)	749
BspT107I	GGYRCC	1 cut(s)	352
BspTI	CTTAAG	1 cut(s)	1010
BsrDI	GCAATG	2 cut(s)	261, 670
BsrI	ACTGG	3 cut(s)	1042, 1103, 1114
BssECI	CCNNGG	1 cut(s)	1119
BssMI	GATC	3 cut(s)	332, 1063, 1074
Bst4CI	ACNGT	3 cut(s)	349, 398, 1087
Bst6I	CTCTTC	2 cut(s)	999, 1144
BstAFI	CTTAAG	1 cut(s)	1010
BstBI	TTCGAA	1 cut(s)	749
BstDEI	CTNAG	5 cut(s)	267, 561, 704, 780, 1260
BstDSI	CCRYGG	1 cut(s)	1119
BstF5I	GGATG	3 cut(s)	283, 409, 1189
BstFNI	CGCG	1 cut(s)	1048
BstKTI	GATC	3 cut(s)	335, 1066, 1077
BstMBI	GATC	3 cut(s)	332, 1063, 1074
BstMWI	GCNNNNNNNGC	1 cut(s)	906
BstSFI	CTRYAG	1 cut(s)	1086
BstUI	CGCG	1 cut(s)	1048
BstV2I	GAAGAC	3 cut(s)	513, 970, 1208
BsuRI	GGCC	1 cut(s)	1118
BtgI	CCRYGG	1 cut(s)	1119
BtsCI	GGATG	3 cut(s)	283, 409, 1189
BtsIMutI	CAGTG	4 cut(s)	403, 687, 818, 1107
BtuMI	TCGCGA	1 cut(s)	1048
CaiI	CAGNNNCTG	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	852
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	1 cut(s)	993
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	5 cut(s)	267, 561, 704, 780, 1260
DpnI	GATC	3 cut(s)	334, 1065, 1076
DpnII	GATC	3 cut(s)	332, 1063, 1074
Eam1104I	CTCTTC	2 cut(s)	999, 1144
EarI	CTCTTC	2 cut(s)	999, 1144
Eco24I	GRGCYC	1 cut(s)	692
Eco32I	GATATC	1 cut(s)	543
Eco47I	GGWCC	1 cut(s)	852
Eco57I	CTGAAG	4 cut(s)	507, 597, 823, 842
EcoRV	GATATC	1 cut(s)	543
EcoT38I	GRGCYC	1 cut(s)	692
FaeI	CATG	1 cut(s)	996
FaqI	GGGAC	1 cut(s)	1096
FatI	CATG	1 cut(s)	992
FbaI	TGATCA	1 cut(s)	1063
FokI	GGATG	3 cut(s)	290, 416, 1196
FriOI	GRGCYC	1 cut(s)	692
FspBI	CTAG	4 cut(s)	143, 878, 897, 999
GsuI	CTGGAG	1 cut(s)	1120
HaeIII	GGCC	1 cut(s)	1118
Hin1II	CATG	1 cut(s)	996
HincII	GTYRAC	2 cut(s)	874, 892
HindII	GTYRAC	2 cut(s)	874, 892
HindIII	AAGCTT	1 cut(s)	866
HphI	GGTGA	3 cut(s)	473, 607, 746
Hpy166II	GTNNAC	2 cut(s)	874, 892
Hpy188I	TCNGA	5 cut(s)	526, 634, 842, 1056, 1129
Hpy188III	TCNNGA	7 cut(s)	432, 509, 809, 928, 960, 1047, 1061
Hpy8I	GTNNAC	2 cut(s)	874, 892
HpyAV	CCTTC	6 cut(s)	107, 251, 407, 583, 709, 757
HpyCH4III	ACNGT	3 cut(s)	349, 398, 1087
HpyCH4V	TGCA	1 cut(s)	79
HpyF10VI	GCNNNNNNNGC	1 cut(s)	906
HpyF3I	CTNAG	5 cut(s)	267, 561, 704, 780, 1260
Hsp92II	CATG	1 cut(s)	996
KpnI	GGTACC	1 cut(s)	356
Ksp22I	TGATCA	1 cut(s)	1063
Kzo9I	GATC	3 cut(s)	332, 1063, 1074
LguI	GCTCTTC	1 cut(s)	999
LmnI	GCTCC	4 cut(s)	116, 989, 1092, 1256
LweI	GCATC	1 cut(s)	562
MaeI	CTAG	4 cut(s)	143, 878, 897, 999
MaeIII	GTNAC	4 cut(s)	64, 235, 343, 1103
MalI	GATC	3 cut(s)	334, 1065, 1076
MboI	GATC	3 cut(s)	332, 1063, 1074
MfeI	CAATTG	2 cut(s)	546, 624
MhlI	GDGCHC	1 cut(s)	692
MlyI	GAGTC	5 cut(s)	527, 673, 1066, 1111, 1124
MseI	TTAA	3 cut(s)	165, 225, 1011
MslI	CAYNNNNRTG	1 cut(s)	378
MspCI	CTTAAG	1 cut(s)	1010
MunI	CAATTG	2 cut(s)	546, 624
Mva1269I	GAATGC	1 cut(s)	781
MvnI	CGCG	1 cut(s)	1048
MwoI	GCNNNNNNNGC	1 cut(s)	906
NdeII	GATC	3 cut(s)	332, 1063, 1074
NlaIII	CATG	1 cut(s)	996
NlaIV	GGNNCC	2 cut(s)	354, 853
NmuCI	GTSAC	2 cut(s)	235, 1103
NruI	TCGCGA	1 cut(s)	1048
NspV	TTCGAA	1 cut(s)	749
PciSI	GCTCTTC	1 cut(s)	999
PcsI	WCGNNNNNNNCGW	1 cut(s)	1052
PctI	GAATGC	1 cut(s)	781
PleI	GAGTC	5 cut(s)	526, 672, 1065, 1110, 1124
PpsI	GAGTC	5 cut(s)	526, 672, 1065, 1110, 1124
PshBI	ATTAAT	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	354, 853
PspPI	GGNCC	1 cut(s)	852
PstNI	CAGNNNCTG	1 cut(s)	62
RruI	TCGCGA	1 cut(s)	1048
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	378
SapI	GCTCTTC	1 cut(s)	999
SaqAI	TTAA	3 cut(s)	165, 225, 1011
Sau3AI	GATC	3 cut(s)	332, 1063, 1074
Sau96I	GGNCC	1 cut(s)	852
SchI	GAGTC	5 cut(s)	527, 673, 1066, 1111, 1124
SduI	GDGCHC	1 cut(s)	692
SfaNI	GCATC	1 cut(s)	562
SfcI	CTRYAG	1 cut(s)	1086
SfuI	TTCGAA	1 cut(s)	749
SinI	GGWCC	1 cut(s)	852
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	1010
SmoI	CTYRAG	1 cut(s)	1010
SpeI	ACTAGT	1 cut(s)	998
SspMI	CTAG	4 cut(s)	143, 878, 897, 999
TaaI	ACNGT	3 cut(s)	349, 398, 1087
TaqI	TCGA	6 cut(s)	368, 539, 554, 749, 905, 1215
Tru1I	TTAA	3 cut(s)	165, 225, 1011
Tru9I	TTAA	3 cut(s)	165, 225, 1011
TscAI	CASTG	4 cut(s)	403, 687, 825, 1114
TseFI	GTSAC	2 cut(s)	235, 1103
Tsp45I	GTSAC	2 cut(s)	235, 1103
TspDTI	ATGAA	5 cut(s)	294, 396, 420, 426, 788
TspGWI	ACGGA	1 cut(s)	1136
TspRI	CASTG	4 cut(s)	403, 687, 825, 1114
Vha464I	CTTAAG	1 cut(s)	1010
VpaK11BI	GGWCC	1 cut(s)	852
VspI	ATTAAT	1 cut(s)	165
XapI	RAATTY	1 cut(s)	919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1150
XspI	CTAG	4 cut(s)	143, 878, 897, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.